TCONS_00041429 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00041429
Unique Name	TCONS_00041429
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	470

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0002866:13404..16250-
coding sequence from alignment at sc0002866:13404..16250-

transcript sequence

>TCONS_00041429 ID=TCONS_00041429|Name=TCONS_00041429|organism=Clytia hemisphaerica|type=transcript|length=470bp
gACTTTCAAAACAATCTGGAGACAAATCGGAGAGAATATCGACAGTTATA
AGACCTTCCCAAAAGTCGTTGGAGaatGCGGTGGCAAAAATTATCACTTT
GTTCACAAAACGGCTGATGTGGATTGTGTTGTTAATGGAACAATTCGATC
AGCATTCGAATATGGTGGCCAAAAATGTTCTGCATGTTCAAGAGTGTATG
TTCCTGATACCTTATGGCCAGAGgtTCGAGAAAAATTGGTATCGGAGATT
GCCAAAATCAAAGTTGGAAATACAGAGGATATGTCAAGCTTTTTGAGCGC
TGTCATTGATGGAACTTCATTCAACAAGATCAAATCATACATCGATCACG
CCAAATCGTCTGGCGATTATACAGTCTTGGCTGGTGGTGAATGTGACGAT
AGtgttgGATACTTTGTTCAACCAACTTTAATTCAAGCAGATGATCCTAA
AGGAAAACTGATGTCAGAGG

Run BLAST on NCBI

protein sequence of TCONS_00041429-protein

>TCONS_00041429-protein ID=TCONS_00041429-protein|Name=TCONS_00041429-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
TFKTIWRQIGENIDSYKTFPKVVGECGGKNYHFVHKTADVDCVVNGTIRS
AFEYGGQKCSACSRVYVPDTLWPEVREKLVSEIAKIKVGNTEDMSSFLSA
VIDGTSFNKIKSYIDHAKSSGDYTVLAGGECDDSVGYFVQPTLIQADDPK
GKLMSE

Run BLAST on NCBI

transcript from alignment at sc0002866:13404..16250-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00041429 ID=TCONS_00041429|Name=TCONS_00041429|organism=Clytia hemisphaerica|type=transcript|length=2847bp|location=Sequence derived from alignment at sc0002866:13404..16250- (Clytia hemisphaerica)
GACTTTCAAAACAATCTGGAGACAAATCGGAGAGAATATCGACAGTTATA
AGTAAGTTGATGAATTAGATTTTGGTAATGCAACGTAGGTAGTGGCAGGG
CTTGGCCCCATGGACCAAATTTTTTTTGGGGTGTCAAAGTACTATGGATG
CTTATATCCTCCTCGGATTATTATCATTACCTCTTTCCCCCTCCCCGAAT
CCACAAATATCGAACAAAACTTCCAAACGCCATATCTCAGTATTCTGATT
CCGAGCGTTATAAATCCTTATTCCTTTCGATGAGTATGCTGTGTGCATAT
ACATCATATANCGAGCGTTATAAATCCTTATTCCTTTCGATGAGTATGCT
GTGTGCATATACATTTTCATACATACACTTTTCTTGTAAGAAGAACCAAT
ATTTTTGGAGATCAAGGAAATTAAAAAAAAAATCGGTTTTTGTCGAAAAA
TAGAAAAGCGCCGTAACTTTTGAAATTAAATTTAGAACTTTTTGTAATAA
TCTTCAAATAAAAATTTCCGTTCATGTTTTCAGGACCTTCCCAAAAGTCG
TTGGAGGTAAAGATTATTTTCATCGAAATTTTTAACGTTACTTGTCTTTT
GGTGTTGTGTTAAAGTGTTATAATATAATTTATATTACTTCGTTGCTGGA
AATTCTAGTGCGATTTCAACAAAATTAAATTTCACAATTAAATTTTTAAA
TCGATTTAAATTAATTAATTAAAATTAATTTTTCACAATTAATTTTCGGT
TTTTTTTTCTTAGCTGGCCAGTGTCTCTTCAGTGCATCTTTTTGGGTTCC
ATTTTCATTATTGATATAGTGCAACATATATAACAAGTATAAATAGAAAA
AACAGTACGGGTAAACGACCCAGGTTAGTTTAATTGTATATACCTTCTAA
GATTCGAGATTTGATTGTCAGAAAATAGAACTCGCGCGGATTAAATGGAT
ATTTTCAAAGTGTTTTTTTTCTCTATTACAGAATCTATCATGGTTAATTT
TTCTATTTTAGAATGCGGTGGCAAAAATTATCACTTTGTTCACAAAACGG
CTGATGTGGGTAAGAAAATAGATAATTTTACGAAAGCATGCGACCCACCT
ACAATCTTTTGTAATTACTTCATAGAAAAGACCTGGTTTGATTGAGTTAC
ATATAAACATTATGCCTATAAACTTTATATCCTAGATAGCAAATTCTTCC
ATATCATTTAGATTTCCACAGGGCCTGGTAACTATAATGAGTTTTAAAAC
ATATGTTGTCAAGGATAACGTAACCCGTAACATCTTTCATTCTTTCATTA
TTTTAATTTTTTTCTAACCTATCAACAGATTGTGTTGTTAATGGAACAAT
TCGATCAGCATTCGAATATGGTGGCCAAAAATGTTCTGCATGTTCAAGAG
TGTATGTTCCTGATACCTTATGGCCAGAGGTATTAGTAACAATTTCTTGA
AAATGAGTTCAACAAATTTTTTTATGGACCAAATTATTTTTGAATAGTTA
TTTCAATTCTTCTAATTTTGTGTAATTACTTTAAAATCTCATTTTTTTTT
TTTTTCTACAGGTTCGAGAAAAATTGGTATCGGAGATTGCCAAAATCAAA
GTTGGAAATGTGAGTGTTACAGAGCAGCTACTTTACGCTCAGCTTTCACT
TCATCTCTTTTCCTGTATACTTTCATTGGATTTAATTGAGAAGACTGGAA
GACTGTAGAGTTTTTAGCTGAAGTTAAAAAATAAAAGAACAATTCACATA
TTTCGCAACTCCAATTTTCGGGTCAGGGCTGAGGTGGCTTAGCATTGAAG
GCTCGAGCCTTATAAAGGAAAAAATATAGTATTAGTTGTGTGGTGTATTA
CATTACATTTGAAAAAAGTGAATCGTTTTCAGAGGACTGCCCATGTCCTA
TTTCCATTCGTTTTGCGTGGAAGTGGCGACCGACTTTGATGGAAACACCT
AATAGCTACGATGTACAATACTGAACTGATGAAAATTGGATGTAATTTTA
TTTAAAATAATGTAATTTCTTTTTAGACAGAGGATATGTCAAGCTTTTTG
AGCGCTGTCATTGATGGAACTGTAAGTGTTAACTTTTAACATTATTGCGT
TTGATTTGTGTTCATTGGATTATTATCTCCTAAAGTCGTTTTCAGTGGTT
CCCAAAAAGATTTCATTCATGTACGTTTTCTGGTCATTTCAGTCATTCAA
CAAGATCAAATCATACATCGATCACGCCAAATCGTCTGGCGATTATACAG
TCTTGGCTGGTGGTGAATGTGACGATAGGTATGTATTATTTCTGGGCAAA
ACCTCTTCAGTAGGAAGACCCTTCTAAGTGAACCGCCACTTACAAAAGTT
AAATTGAACCCCCTGTAAAGTGCCGCAAACTTTTGAATACCTTTATCGGG
AAAAAATGTTGAGGGAAAGTGACGAAAATTTTTAGGAGATGACGAAATTT
TCCCCCAACATTTTATCACCCGAACAAATAGATTTTTTTTCCAACAAAAA
TTCAAATCCAAAATTTTTACGCCTTTATTAACCGAAATTAATGCTTTGAA
CTTCGAAATACAAAATCTATTTTCGACCTAGTGAAGGAAAGCATTTCATT
TTTCAATTTAGTCAGTTGGAACTGTAAATTTGGTCGGGGAAAAGTGACGA
AAATGCCTCTAGGTGACGAAATTTTTTTTGACTTACTAAAACGTAGACAT
TTTTCCCCCGATACCTCCAAAAGTTATTTTCTGTTCAGCCCTTCTACTTA
TTAATTGATATTTTTGATTTTTTTTTCAGTGTTGGATACTTTGTTCAACC
AACTTTAATTCAAGCAGATGATCCTAAAGGAAAACTGATGTCAGAGG

Coding sequence (CDS) from alignment at sc0002866:13404..16250-

>TCONS_00041429 ID=TCONS_00041429|Name=TCONS_00041429|organism=Clytia hemisphaerica|type=CDS|length=3744bp|location=Sequence derived from alignment at sc0002866:13404..16250- (Clytia hemisphaerica)
TGTTGGATACTTTGTTCAACCAACTTTAATTCAAGCAGATGATCCTAAAG
GAAAACTGATGTCAGAGTCATTCAACAAGATCAAATCATACATCGATCAC
GCCAAATCGTCTGGCGATTATACAGTCTTGGCTGGTGGTGAATGTGACGA
TAGACAGAGGATATGTCAAGCTTTTTGAGCGCTGTCATTGATGGAACTGT
TCGAGAAAAATTGGTATCGGAGATTGCCAAAATCAAAGTTGGAAATATTG
TGTTGTTAATGGAACAATTCGATCAGCATTCGAATATGGTGGCCAAAAAT
GTTCTGCATGTTCAAGAGTGTATGTTCCTGATACCTTATGGCCAGAGAAT
GCGGTGGCAAAAATTATCACTTTGTTCACAAAACGGCTGATGTGGGACCT
TCCCAAAAGTCGTTGGAGACTTTCAAAACAATCTGGAGACAAATCGGAGA
GAATATCGACAGTTATAATGTTGGATACTTTGTTCAACCAACTTTAATTC
AAGCAGATGATCCTAAAGGAAAACTGATGTCAGAGTCATTCAACAAGATC
AAATCATACATCGATCACGCCAAATCGTCTGGCGATTATACAGTCTTGGC
TGGTGGTGAATGTGACGATAGACAGAGGATATGTCAAGCTTTTTGAGCGC
TGTCATTGATGGAACTGTTCGAGAAAAATTGGTATCGGAGATTGCCAAAA
TCAAAGTTGGAAATATTGTGTTGTTAATGGAACAATTCGATCAGCATTCG
AATATGGTGGCCAAAAATGTTCTGCATGTTCAAGAGTGTATGTTCCTGAT
ACCTTATGGCCAGAGAATGCGGTGGCAAAAATTATCACTTTGTTCACAAA
ACGGCTGATGTGGGACCTTCCCAAAAGTCGTTGGAGACTTTCAAAACAAT
CTGGAGACAAATCGGAGAGAATATCGACAGTTATAATGTTGGATACTTTG
TTCAACCAACTTTAATTCAAGCAGATGATCCTAAAGGAAAACTGATGTCA
GAGTCATTCAACAAGATCAAATCATACATCGATCACGCCAAATCGTCTGG
CGATTATACAGTCTTGGCTGGTGGTGAATGTGACGATAGACAGAGGATAT
GTCAAGCTTTTTGAGCGCTGTCATTGATGGAACTGTTCGAGAAAAATTGG
TATCGGAGATTGCCAAAATCAAAGTTGGAAATATTGTGTTGTTAATGGAA
CAATTCGATCAGCATTCGAATATGGTGGCCAAAAATGTTCTGCATGTTCA
AGAGTGTATGTTCCTGATACCTTATGGCCAGAGAATGCGGTGGCAAAAAT
TATCACTTTGTTCACAAAACGGCTGATGTGGGACCTTCCCAAAAGTCGTT
GGAGACTTTCAAAACAATCTGGAGACAAATCGGAGAGAATATCGACAGTT
ATAATGTTGGATACTTTGTTCAACCAACTTTAATTCAAGCAGATGATCCT
AAAGGAAAACTGATGTCAGAGTCATTCAACAAGATCAAATCATACATCGA
TCACGCCAAATCGTCTGGCGATTATACAGTCTTGGCTGGTGGTGAATGTG
ACGATAGACAGAGGATATGTCAAGCTTTTTGAGCGCTGTCATTGATGGAA
CTGTTCGAGAAAAATTGGTATCGGAGATTGCCAAAATCAAAGTTGGAAAT
ATTGTGTTGTTAATGGAACAATTCGATCAGCATTCGAATATGGTGGCCAA
AAATGTTCTGCATGTTCAAGAGTGTATGTTCCTGATACCTTATGGCCAGA
GAATGCGGTGGCAAAAATTATCACTTTGTTCACAAAACGGCTGATGTGGG
ACCTTCCCAAAAGTCGTTGGAGACTTTCAAAACAATCTGGAGACAAATCG
GAGAGAATATCGACAGTTATAATGTTGGATACTTTGTTCAACCAACTTTA
ATTCAAGCAGATGATCCTAAAGGAAAACTGATGTCAGAGTCATTCAACAA
GATCAAATCATACATCGATCACGCCAAATCGTCTGGCGATTATACAGTCT
TGGCTGGTGGTGAATGTGACGATAGACAGAGGATATGTCAAGCTTTTTGA
GCGCTGTCATTGATGGAACTGTTCGAGAAAAATTGGTATCGGAGATTGCC
AAAATCAAAGTTGGAAATATTGTGTTGTTAATGGAACAATTCGATCAGCA
TTCGAATATGGTGGCCAAAAATGTTCTGCATGTTCAAGAGTGTATGTTCC
TGATACCTTATGGCCAGAGAATGCGGTGGCAAAAATTATCACTTTGTTCA
CAAAACGGCTGATGTGGGACCTTCCCAAAAGTCGTTGGAGACTTTCAAAA
CAATCTGGAGACAAATCGGAGAGAATATCGACAGTTATAATGTTGGATAC
TTTGTTCAACCAACTTTAATTCAAGCAGATGATCCTAAAGGAAAACTGAT
GTCAGAGTCATTCAACAAGATCAAATCATACATCGATCACGCCAAATCGT
CTGGCGATTATACAGTCTTGGCTGGTGGTGAATGTGACGATAGACAGAGG
ATATGTCAAGCTTTTTGAGCGCTGTCATTGATGGAACTGTTCGAGAAAAA
TTGGTATCGGAGATTGCCAAAATCAAAGTTGGAAATATTGTGTTGTTAAT
GGAACAATTCGATCAGCATTCGAATATGGTGGCCAAAAATGTTCTGCATG
TTCAAGAGTGTATGTTCCTGATACCTTATGGCCAGAGAATGCGGTGGCAA
AAATTATCACTTTGTTCACAAAACGGCTGATGTGGGACCTTCCCAAAAGT
CGTTGGAGACTTTCAAAACAATCTGGAGACAAATCGGAGAGAATATCGAC
AGTTATAATGTTGGATACTTTGTTCAACCAACTTTAATTCAAGCAGATGA
TCCTAAAGGAAAACTGATGTCAGAGTCATTCAACAAGATCAAATCATACA
TCGATCACGCCAAATCGTCTGGCGATTATACAGTCTTGGCTGGTGGTGAA
TGTGACGATAGACAGAGGATATGTCAAGCTTTTTGAGCGCTGTCATTGAT
GGAACTGTTCGAGAAAAATTGGTATCGGAGATTGCCAAAATCAAAGTTGG
AAATATTGTGTTGTTAATGGAACAATTCGATCAGCATTCGAATATGGTGG
CCAAAAATGTTCTGCATGTTCAAGAGTGTATGTTCCTGATACCTTATGGC
CAGAGAATGCGGTGGCAAAAATTATCACTTTGTTCACAAAACGGCTGATG
TGGGACCTTCCCAAAAGTCGTTGGAGACTTTCAAAACAATCTGGAGACAA
ATCGGAGAGAATATCGACAGTTATAATGTTGGATACTTTGTTCAACCAAC
TTTAATTCAAGCAGATGATCCTAAAGGAAAACTGATGTCAGAGTCATTCA
ACAAGATCAAATCATACATCGATCACGCCAAATCGTCTGGCGATTATACA
GTCTTGGCTGGTGGTGAATGTGACGATAGACAGAGGATATGTCAAGCTTT
TTGAGCGCTGTCATTGATGGAACTGTTCGAGAAAAATTGGTATCGGAGAT
TGCCAAAATCAAAGTTGGAAATATTGTGTTGTTAATGGAACAATTCGATC
AGCATTCGAATATGGTGGCCAAAAATGTTCTGCATGTTCAAGAGTGTATG
TTCCTGATACCTTATGGCCAGAGAATGCGGTGGCAAAAATTATCACTTTG
TTCACAAAACGGCTGATGTGGGACCTTCCCAAAAGTCGTTGGAGACTTTC
AAAACAATCTGGAGACAAATCGGAGAGAATATCGACAGTTATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_025402	XLOC_025402	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00041429-protein	TCONS_00041429-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002866	supercontig	sc0002866:13404..16250 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.1244	7.9525	2.4844	5.16173	12.6415	10.7736	18.1032	17.039	32.9144	32.9343	27.8645	47.1844	52.7481	59.2254	78.8008	80.4518	83.9757	96.8507	76.1551	80.8279	77.9192	90.4656	45.7187	58.1279	36.2602	31.2465	174.443	199.314	32.9193	30.322

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR016162	Ald_DH_N
IPR015590	Aldehyde_DH_dom
IPR016160	Ald_DH_CS_CYS
IPR016161	Ald_DH/histidinol_DH

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016491	oxidoreductase activity

Blast

[Close]

BLAST of TCONS_00041429 vs. Swiss-Prot (Human)
Match: AL4A1 (Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH4A1 PE=1 SV=3)

HSP 1 Score: 220.32 bits (560), Expect = 1.098e-68
Identity = 91/157 (57.96%), Postives = 130/157 (82.80%), Query Frame = 2

Query:    2 TFKTIWRQIGENIDSYKTFPKVVGECGGKNYHFVHKTADVDCVVNGTIRSAFEYGGQKCSACSRVYVPDTLWPEVREKLVSEIAKIKVGN-TEDMSSFLSAVIDGTSFNKIKSYIDHAKSSGDYTVLAGGECDDSVGYFVQPTLIQADDPKGKLMSE 469
            TFK +W+Q+ +N+D + TFP++ GECGGKN+HFVH++ADV+ VV+GT+RSAFEYGGQKCSACSR+YVP +LWP+++ +L+ E ++IKVG+  ED  +F SAVID  SF +IK +++HA+SS   T+LAGG+CDDSVGYFV+P ++++ DP+  +M E
Sbjct:  290 TFKHLWKQVAQNLDRFHTFPRLAGECGGKNFHFVHRSADVESVVSGTLRSAFEYGGQKCSACSRLYVPHSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKSFARIKKWLEHARSSPSLTILAGGKCDDSVGYFVEPCIVESKDPQEPIMKE 446

The following BLAST results are available for this feature:

BLAST of TCONS_00041429 vs. Swiss-Prot (Human)

BLAST of TCONS_00041429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AL4A1	1.098e-68	57.96	Delta-1-pyrroline-5-carboxylate dehydrogenase, mit...	[more]

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TCONS_00041429 (transcript) - C. hemisphaerica