TCONS_00041426 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041426
Unique NameTCONS_00041426
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041426 ID=TCONS_00041426|Name=TCONS_00041426|organism=Clytia hemisphaerica|type=transcript|length=229bp
agATAAGGAAAAGAAGGCTGACAAAGTGGACAAAGAAATCCCACCCTTCC
GTCTGTGTTTAGAAAATCTCCTTCGCAATTTACAAAGgAAAGATGTGTAC
AACATTTTTCAATTCCCCGTATCAGATGCCGTTGCGCCTGGTTATTCCAA
AGTGATCAAAAAACCAATGGACTTCATGACCATGtcacaaaaaatcgaaa
aagatgAATACACTTCTATCGAAGAATTT
Run BLAST on NCBI

transcript from alignment at sc0002864:6416..7267+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041426 ID=TCONS_00041426|Name=TCONS_00041426|organism=Clytia hemisphaerica|type=transcript|length=852bp|location=Sequence derived from alignment at sc0002864:6416..7267+ (Clytia hemisphaerica)
agATAAGGAAAAGAAGGCTGACAAAGTGGACAAAGAAATCCCACCCTTCC
GTCTGTGTTTAGAAAATCTCCTTCGCAATTTACAAAGGTACTGGTATACA
TTTGACAGTACAGGTTTTAATAAATGCAAAATCTTCTGGATCTTGTGAGA
AtggttttttgtaaatattttgtgAACTTTGTATATATAGTAAACCAGAA
CATCACCTCTACTCTTGATTGAGAGAATTTTTAAAGTGTACGATTTCACC
CAACAGCTACCCATCCGAAAGTAGGAGAGGGTGCACTTTATTTTCTCTGG
GTTGCTCCACTGACCAGGGatcaaaataaatcataaacCCACGAATTTGT
TCACTTTAGACAAAGAACCCTCTTGCAGGCTaggtaagtaagtctgcgac
cgcagtcggaggcgacccgaaggctcctctttcgatagctaccTACCCGA
TGGTAGGGGAttgcgccactctttctccctggattgctccacttatcCTT
GATCCACTTATCCTTGATCCaactcttaattgctgagcatcaagcagaga
gttatcaagtaccattttgggaatctttggtatgacccggctgggggttg
aacccacaaccttgcgaaccgttgCCGGCACTACGGTCGCTTGCAGGCTA
GAATCACTCAAAGCTTAAAGTATACACCATTAAATCtataatttgatttt
tgtttttcaggAAAGATGTGTACAACATTTTTCAATTCCCCGTATCAGAT
GCCGTTGCGCCTGGTTATTCCAAAGTGATCAAAAAACCAATGGACTTCAT
GACCATGtcacaaaaaatcgaaaaagatgAATACACTTCTATCGAAGAAT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025399XLOC_025399Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041426-exon-sc0002864-1491911889:6416..6502TCONS_00041426-exon-sc0002864-1491911889:6416..6502Clytia hemisphaericaexon
TCONS_00041426-exon-sc0002864-1510915933:6416..6502TCONS_00041426-exon-sc0002864-1510915933:6416..6502Clytia hemisphaericaexon
TCONS_00041426-exon-sc0002864-1575043694:6416..6502TCONS_00041426-exon-sc0002864-1575043694:6416..6502Clytia hemisphaericaexon
TCONS_00041426-exon-sc0002864-1491911889:7126..7267TCONS_00041426-exon-sc0002864-1491911889:7126..7267Clytia hemisphaericaexon
TCONS_00041426-exon-sc0002864-1510915933:7126..7267TCONS_00041426-exon-sc0002864-1510915933:7126..7267Clytia hemisphaericaexon
TCONS_00041426-exon-sc0002864-1575043694:7126..7267TCONS_00041426-exon-sc0002864-1575043694:7126..7267Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002864supercontigsc0002864:6416..7267 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1737	8.65743	10.1279	6.93382	14.4737	4.57492	4.13959	0	5.82257	7.94387	4.71403	10.1279	4.45067	5.54117	2.76758	8.4078	8.42898	8.25328	2.51515	6.81966	10.377	0	3.69178	7.04749	4.6093	2.05685	8.05999	0	2.3825	1.34817
Blast
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BLAST of TCONS_00041426 vs. Swiss-Prot (Human)
Match: BRD9 (Bromodomain-containing protein 9 OS=Homo sapiens GN=BRD9 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.274e-18
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 2 
Query:   44 PFRLCLENLLRNLQRKDVYNIFQFPVSDAVAPGYSKVIKKPMDFMTMSQKIEKDEYTSIEEF 229
            P +  LE+ LR LQRKD +  F FPV+DA+APGYS +IK PMDF TM  KI  +EY S+ EF
Sbjct:  140 PIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEF 201
The following BLAST results are available for this feature:
BLAST of TCONS_00041426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRD96.274e-1858.06Bromodomain-containing protein 9 OS=Homo sapiens G... [more]
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