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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041425 ID=TCONS_00041425|Name=TCONS_00041425|organism=Clytia hemisphaerica|type=transcript|length=1535bp
CACCAACGAACAAAATACCCTATCAAAATATAAATAGATAACCACCACAA
AAACACTCTACCCCATAACCACCAATATGTCAATCGAATAGCTACTAATA
GCAGTCAAAtaactaaaaaatgaaaaaatccccAACAAACGCCCtacctg
tcaatcaaataatcaaTTACATAACATTCAACTGATTACTAAACTATTGC
ACTATAGAACACCCTACCACATAATCTCAACCTGTCAATCAAATTAACCA
ACGGCGCCCCACCACAAAACCTTCAATATGCCAATCTAATAACCACCAAC
AACGCCCTATTATAAAACCCACAATATATATCCACTACATTAGCCCTCGA
CCTAAATAAACTAAACTAAATAAAGCCCATAATCATAACCAACTCAAAAC
AAGAAACCCCACTAATTCCACTGATAGCTCAAAGCATTATCAAATAAGAA
GAACAATACAACAACCCACTGATTGACTACTATTCAACAAACTACTATAA
AAACAAAAGCGCACCAAAATCGTATCCAGACCCCTCGCTTATATACGCGT
GCCATAacagaaaatacaaaaggaagaATACAAATAGACCAAAATCGGAC
CCAAACCCCATACTAGAAAAGCAGCTTCTAAATACCACGAGACTCCTTTT
CTCCACAACCACTGATAAGATAAGACATGATGGCCAACAACACTTCATAC
TTTGCCGACGATATCGACCAGGAAGATCTGGAACAAATAGAAAACTCGCC
CGGAATGACCAGACATGGAATGACACTACACAAAACGCCACTGTCGTTTA
CAAAACCTATCGATCGAAACGAAAAAACACCACTGAACAAACCCAACACA
GACCGAAACGAAACAACACCAGCAGCCTCGCCCAACGACTCCGATGATGA
CTTTGACAAATCACTAAAACAGCGTAATTCTTTCAAAATTCCAAAACGAC
CACAACCAACAATTACGAACCAACCTGACTACAAAGACAAATACAAACAC
CACGCCATCAAAACCATCGACCACACCCtacaattcaattttttaaaaga
caagcaaacaaagcaaGAAGTACCCAATGGATGTAAACCCACAATCAACA
CCCGTTCAATTCTCAATGATGAACTAAAACGAAGGTGGGATGCTAACTTG
TTGAGGGCAGGTAGCATCGCAAGGGACATCCTCATTGAACACCATGAATT
TTGGAGGAACCATCACACCTCAAAACGCAAAAACGCCAAGCAACACCTAC
AACCAACAACCATTGAGGCCCTCAACAACGCTGCTCACGAGGAGTACCAC
ACTAGAAAGAGAAACCGTGACGAAAACAACGAAAACAAGGAATATCGACC
AAGAAAAGAAAAGCAACAACGACTACTAGAAAACACCGGAAACAAGGAAT
ATCGACCAAGAAAAGAAAAGCAACAACGACTACTAGAAAACACCGGAAAC
AAGGAATACCGACCAAGACAAAGACCACAAAAACTCCAAAAAAACTAGTT
TATAATGTACATAATGTAAATAATGTAAATAGCTC Run BLAST on NCBI protein sequence of TCONS_00041425-protein >TCONS_00041425-protein ID=TCONS_00041425-protein|Name=TCONS_00041425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MMANNTSYFADDIDQEDLEQIENSPGMTRHGMTLHKTPLSFTKPIDRNEK
TPLNKPNTDRNETTPAASPNDSDDDFDKSLKQRNSFKIPKRPQPTITNQP
DYKDKYKHHAIKTIDHTLQFNFLKDKQTKQEVPNGCKPTINTRSILNDEL
KRRWDANLLRAGSIARDILIEHHEFWRNHHTSKRKNAKQHLQPTTIEALN
NAAHEEYHTRKRNRDENNENKEYRPRKEKQQRLLENTGNKEYRPRKEKQQ
RLLENTGNKEYRPRQRPQKLQKN Run BLAST on NCBI transcript from alignment at sc0002862:5286..10176+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041425 ID=TCONS_00041425|Name=TCONS_00041425|organism=Clytia hemisphaerica|type=transcript|length=4891bp|location=Sequence derived from alignment at sc0002862:5286..10176+ (Clytia hemisphaerica)
CACCAACGAACAAAATACCCTATCAAAATATAAATAGATAACCACCACAA
AAACACTCTACCCCATAACCACCAATATGTCAATCGAATAGCTACTAATA
GCAGTCAAAtaactaaaaaatgaaaaaatccccAACAAACGCCCtacctg
tcaatcaaataatcaaTTACATAACATTCAACTGATTACTAAACTATTGC
ACTATAGAACACCCTACCACATAATCTCAACCTGTCAATCAAATTAACCA
ACGGCGCCCCACCACAAAACCTTCAATATGCCAATCTAATAACCACCAAC
AACGCCCTATTATAAAACCCACAATATATATCCACTACATTAGCCCTCGA
CCTAAATAAACTAAACTAAATAAAGCCCATAATCATAACCAACTCAAAAC
AAGAAACCCCACTAATTCCACTGATAGCTCAAAGCATTATCAAATAAGAA
GAACAATACAACAACCCACTGATTGACTACTATTCAACAAACTACTATAA
AAACAAAAGCGCACCAAAATCGTATCCAGACCCCTCGCTTATATACGCGT
GCCATAacagaaaatacaaaaggaagaATACAAATAGACCAAAATCGGAC
CCAAACCCCATACTAGAAAAGCAGCTTCTAAATACCACGAGACTCCTTTT
CTCCACAACCACTGATAAGATAAGACATGATGGCCAACAACACTTCATAC
TTTGCCGACGGTAAGACTTACATTATTCGCTCCTACCACACCATTCTCCT
CACCCGTCCTTCTAAATGAGTTATGCACCAATGATATCTTAATGGACCAC
TTCAAAATGACTGAAGCCTTGTAACATATTTGAATGTCCATGGTTCTTCA
GTACTCATTTTTAGAATATACTACTAGATTGCAAATTGCAATCTTAAATA
TCGAACACTAGAGCCTCATATCAATTTATATACAACCTTCTCAAAACAAC
CCTATGCTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttaaaaaatgg
aaaataactcggaaagttaaaggaagcaaaataaaccgagttatgaaatg
aaaaatgacgtcactaaattccaaaaatgacgtcataactcaggataact
cgggttttttttaactcggtttttttaactcggaaaaaataactcgggaa
ttccgggcctcaaaaattataaacatacgaaaaatctttttcttcaagCA
TAATacaataaaaccaaaaaaacagCAATGTTCAAAAAACAGCAAtgttc
aaaaaactcaaaatttcaacaCCAATAATAACGAGAGTATAATCAAAAGA
CTTATTTGTATAAACTCTCGAAACACAAAAGAATATATAATTTTGAACAA
ATAAACTCTCtaaacacaaaggaatacaTATTTTTGAGCAAATAATTATA
ACAACCTTCACAGCGAAATCACAAAAATTAACACAATAGAGTCATAGAAG
AGAACAAAACGGACCGAAACTATAAAACACTGGACTTCACtataaatatt
atataaaaattacaCGAACAAATAAAACTTCTATTCTTACCACAACTCGA
ACATAGCTATAACAATAGATACATAAATAATGAACTAACACAAAATAGCT
TCACTTTATAATAAAGAACCGAAATGAAAACTTCGATTAAACTGCAAAAA
GATTATATACACACATACATATACACTTCTTCTGCAACACACGAAGAAAT
ACTTTTATAAGCACaataattttataagcacaataaCTAATGATTTGATA
AAAAGAATCTACAACATATATTTGACCTCTTATTTGGAAAATCTCTTAAA
AGCTTACACATAAGTTTACCTACCTACTTTACATGCCACCTACTTAACAC
ATACCCAGACTCTAATATTTAAATAACTAATATTAAATCATTCCTATAAC
TAAAACTAACacattcaaaatttacaaatttattAATATTTCTACATCTT
TTTTCCATAACTCCAGATATCGACCAGGAAGATCTGGAACAAATAGAAAA
CTCGCCCGGAATGACCAGACATGGAATGACACTACACAAAACGCCACTGT
CGTTTACAAAACCTATCGATCGAAACGAAAAAACACCACTGAACAAACCC
AACACAGACCGAAACGAAACAACACCAGCAGCCTCGCCCAACGACTCCGA
TGATGACTTTGACAAATCACTAAAACAGCGTAATTCTTTCAAAATTCCAA
AACGACCACAACCAACAATTACGAACCAACCTGACTACAAAGACAAATAC
AAACACCACGCCATCAAAACCATCGACCACACCCtacaattcaatttttt
aaaagacaagcaaacaaagcaaGAAGTACCCAATGGATGTAAACCCACAA
TCAACACCCGTTCAATTCTCAATGATGAACTAAAACGAAGGTGGGATGCT
AACTTGTTGAGGGCAGGTAGCATCGCAAGGGACATCCTCATTGAACACCA
TGAATTTTGGAGGAACCATCACACCTCAAAACGCAAAAACGCCAAGCAAC
ACCTACAACCAACAACCATTGAGGCCCTCAACAACGCTGCTCACGAGGAG
TACCACACTAGAAAGAGAAACCGTGACGAAAACAACGAAAACAAGGAATA
TCGACCAAGAAAAGAAAAGCAACAACGACTACTAGAAAACACCGGAAACA
AGGAATATCGACCAAGAAAAGAAAAGCAACAACGACTACTAGAAAACACC
GGAAACAAGGAATACCGACCAAGACAAAGACCACAAAAACTCCAAAAAAA
CTAGTTTATAATGTACATAATGTAAATAATGTAAATAGCTC Coding sequence (CDS) from alignment at sc0002862:5286..10176+ >TCONS_00041425 ID=TCONS_00041425|Name=TCONS_00041425|organism=Clytia hemisphaerica|type=CDS|length=1644bp|location=Sequence derived from alignment at sc0002862:5286..10176+ (Clytia hemisphaerica)
ATGATGGCCAACAACACTTCATACTTTGCCGACGATATCGACCAGGAAGA
TCTGGAACAAATAGAAAACTCGCCCGGAATGACCAGACATGGAATGACAC
TACACAAAACGCCACTGTCGTTTACAAAACCTATCGATCGAAACGAAAAA
ACACCACTGAACAAACCCAACACAGACCGAAACGAAACAACACCAGCAGC
CTCGCCCAACGACTCCGATGATGACTTTGACAAATCACTAAAACAGCGTA
ATTCTTTCAAAATTCCAAAACGACCACAACCAACAATTACGAACCAACCT
GACTACAAAGACAAATACAAACACCACGCCATCAAAACCATCGACCACAC
CCtacaattcaattttttaaaagacaagcaaacaaagcaaGAAGTACCCA
ATGGATGTAAACCCACAATCAACACCCGTTCAATTCTCAATGATGAACTA
AAACGAAGGTGGGATGCTAACTTGTTGAGGGCAGGTAGCATCGCAAGGGA
CATCCTCATTGAACACCATGAATTTTGGAGGAACCATCACACCTCAAAAC
GCAAAAACGCCAAGCAACACCTACAACCAACAACCATTGAGGCCCTCAAC
AACGCTGCTCACGAGGAGTACCACACTAGAAAGAGAAACCGTGACGAAAA
CAACGAAAACAAGGAATATCGACCAAGAAAAGAAAAGCAACAACGACTAC
TAGAAAACACCGGAAACAAGGAATATCGACCAAGAAAAGAAAAGCAACAA
CGACTACTAGAAAACACCGGAAACAAGGAATACCGACCAAGACAAAGACC
ACAAAAACTCCAAAAAAACTAGATGATGGCCAACAACACTTCATACTTTG
CCGACGATATCGACCAGGAAGATCTGGAACAAATAGAAAACTCGCCCGGA
ATGACCAGACATGGAATGACACTACACAAAACGCCACTGTCGTTTACAAA
ACCTATCGATCGAAACGAAAAAACACCACTGAACAAACCCAACACAGACC
GAAACGAAACAACACCAGCAGCCTCGCCCAACGACTCCGATGATGACTTT
GACAAATCACTAAAACAGCGTAATTCTTTCAAAATTCCAAAACGACCACA
ACCAACAATTACGAACCAACCTGACTACAAAGACAAATACAAACACCACG
CCATCAAAACCATCGACCACACCCtacaattcaattttttaaaagacaag
caaacaaagcaaGAAGTACCCAATGGATGTAAACCCACAATCAACACCCG
TTCAATTCTCAATGATGAACTAAAACGAAGGTGGGATGCTAACTTGTTGA
GGGCAGGTAGCATCGCAAGGGACATCCTCATTGAACACCATGAATTTTGG
AGGAACCATCACACCTCAAAACGCAAAAACGCCAAGCAACACCTACAACC
AACAACCATTGAGGCCCTCAACAACGCTGCTCACGAGGAGTACCACACTA
GAAAGAGAAACCGTGACGAAAACAACGAAAACAAGGAATATCGACCAAGA
AAAGAAAAGCAACAACGACTACTAGAAAACACCGGAAACAAGGAATATCG
ACCAAGAAAAGAAAAGCAACAACGACTACTAGAAAACACCGGAAACAAGG
AATACCGACCAAGACAAAGACCACAAAAACTCCAAAAAAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041425-exon-sc0002862-1491911889:5286..5995 | TCONS_00041425-exon-sc0002862-1491911889:5286..5995 | Clytia hemisphaerica | exon |
| TCONS_00041425-exon-sc0002862-1510915933:5286..5995 | TCONS_00041425-exon-sc0002862-1510915933:5286..5995 | Clytia hemisphaerica | exon |
| TCONS_00041425-exon-sc0002862-1575043694:5286..5995 | TCONS_00041425-exon-sc0002862-1575043694:5286..5995 | Clytia hemisphaerica | exon |
| TCONS_00041425-exon-sc0002862-1491911889:9352..10176 | TCONS_00041425-exon-sc0002862-1491911889:9352..10176 | Clytia hemisphaerica | exon |
| TCONS_00041425-exon-sc0002862-1510915933:9352..10176 | TCONS_00041425-exon-sc0002862-1510915933:9352..10176 | Clytia hemisphaerica | exon |
| TCONS_00041425-exon-sc0002862-1575043694:9352..10176 | TCONS_00041425-exon-sc0002862-1575043694:9352..10176 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002862 | supercontig | sc0002862:5286..10176 + |
Blast
The following BLAST results are available for this feature:
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