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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041423 ID=TCONS_00041423|Name=TCONS_00041423|organism=Clytia hemisphaerica|type=transcript|length=1125bp
AAAATAATGACCCTCTATCTAGTCCAATGATATTTTCATCTGTTCTTTGA
CGATCTGAagcattttcttcatcatcttcaCTAAAGTCATCATCACTTGA
CTCATCAAATCTGTCGGGTATTTCTTCCTCTTCCTTTTCCTCTTCCACAT
TTCCGGCTTCGCTCGCTTTTGTTTTGTAAGGCACCGTCTGCTTTGCAGTC
TCTTCGATTTCAGATGTGGTATACACATAATGTGGCATGGTACCCATTTT
ACACATGGTGGTTTCCTGTCTGACGGTTCGTTGACGCACAGCCCTCGTGT
AGTTTGTCGCCCAGTTCTGCAGCGTTTCTTCGTCTCGCTTTTCGATCTTG
GTAGGTAGATTTTTTGGTGGAAGGATTTTGTTTATCTCATTGAAATTACA
AAAACTATCCGGAAGAGGATACCAACTGCCTTTTCTGTTCGTAAAGTAAT
ACGCAGACCATGGATATCccctttttaaagattcctTAACGGATCTCATA
AACTCTCGGGAATATTGTAGCTGAGTCATCAGGACGTGCTTAGTGTGAGT
AGTTGCGTGGAAATGCTCAACTGACAATGTCATCATGCTGAGAAGATTAG
TTTTTTCGTAGTGAAAAGTTGCCAATGTATCTTTCAACTTTGAAACGGAC
CATTGTGTCATCTCCAAGGAGATAAACGACTTTGTGGAAACGAATCCTTG
TGCACCAGTGAGAGATTTTGGAAGGTTGTTGACATTTTCTCTGATGTCAG
CTTCTAACATAGACATTGTGGATAAGGATTTTGATATTAGCTCCAGTCCT
TGTTCCAAAGTCTTCGGCTTGTAGGTAGCTGAAATGAAAGTAATTAATGT
TTAGATCTGTATTATCTTTTATATCAGAGTTACCACAACCCAAATGGGAG
TCTCTGGAATGGAAAATACACACCAAAAACCACATTCCTTTAAAAGATAA
AGCAATTCAACCAAAGTTAATAGAATTCGCTGTTCCTAGTTGCTTACTTG
TTAGTATAAAATCTACCCGATGGAACAGCGAGGCTGCTTTATAATGTGTG
TCGTACCTAAGTGAATCTGAATAAAATATTCATTAGAATAGAGTAAATCT
TTAACAAAGGCTCCTATGATTTAAG Run BLAST on NCBI protein sequence of TCONS_00041423-protein >TCONS_00041423-protein ID=TCONS_00041423-protein|Name=TCONS_00041423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MSMLEADIRENVNNLPKSLTGAQGFVSTKSFISLEMTQWSVSKLKDTLAT
FHYEKTNLLSMMTLSVEHFHATTHTKHVLMTQLQYSREFMRSVKESLKRG
YPWSAYYFTNRKGSWYPLPDSFCNFNEINKILPPKNLPTKIEKRDEETLQ
NWATNYTRAVRQRTVRQETTMCKMGTMPHYVYTTSEIEETAKQTVPYKTK
ASEAGNVEEEKEEEEIPDRFDESSDDDFSEDDEENASDRQRTDENIIGLD
RGSLF Run BLAST on NCBI transcript from alignment at sc0002859:15642..16766 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041423 ID=TCONS_00041423|Name=TCONS_00041423|organism=Clytia hemisphaerica|type=transcript|length=1125bp|location=Sequence derived from alignment at sc0002859:15642..16766 (Clytia hemisphaerica)
CTTAAATCATAGGAGCCTTTGTTAAAGATTTACTCTATTCTAATGAATAT
TTTATTCAGATTCACTTAGGTACGACACACATTATAAAGCAGCCTCGCTG
TTCCATCGGGTAGATTTTATACTAACAAGTAAGCAACTAGGAACAGCGAA
TTCTATTAACTTTGGTTGAATTGCTTTATCTTTTAAAGGAATGTGGTTTT
TGGTGTGTATTTTCCATTCCAGAGACTCCCATTTGGGTTGTGGTAACTCT
GATATAAAAGATAATACAGATCTAAACATTAATTACTTTCATTTCAGCTA
CCTACAAGCCGAAGACTTTGGAACAAGGACTGGAGCTAATATCAAAATCC
TTATCCACAATGTCTATGTTAGAAGCTGACATCAGAGAAAATGTCAACAA
CCTTCCAAAATCTCTCACTGGTGCACAAGGATTCGTTTCCACAAAGTCGT
TTATCTCCTTGGAGATGACACAATGGTCCGTTTCAAAGTTGAAAGATACA
TTGGCAACTTTTCACTACGAAAAAACTAATCTTCTCAGCATGATGACATT
GTCAGTTGAGCATTTCCACGCAACTACTCACACTAAGCACGTCCTGATGA
CTCAGCTACAATATTCCCGAGAGTTTATGAGATCCGTTAaggaatcttta
aaaagggGATATCCATGGTCTGCGTATTACTTTACGAACAGAAAAGGCAG
TTGGTATCCTCTTCCGGATAGTTTTTGTAATTTCAATGAGATAAACAAAA
TCCTTCCACCAAAAAATCTACCTACCAAGATCGAAAAGCGAGACGAAGAA
ACGCTGCAGAACTGGGCGACAAACTACACGAGGGCTGTGCGTCAACGAAC
CGTCAGACAGGAAACCACCATGTGTAAAATGGGTACCATGCCACATTATG
TGTATACCACATCTGAAATCGAAGAGACTGCAAAGCAGACGGTGCCTTAC
AAAACAAAAGCGAGCGAAGCCGGAAATGTGGAAGAGGAAAAGGAAGAGGA
AGAAATACCCGACAGATTTGATGAGTCAAGTGATGATGACTTTAGtgaag
atgatgaagaaaatgctTCAGATCGTCAAAGAACAGATGAAAATATCATT
GGACTAGATAGAGGGTCATTATTTT Coding sequence (CDS) from alignment at sc0002859:15642..16766 >TCONS_00041423 ID=TCONS_00041423|Name=TCONS_00041423|organism=Clytia hemisphaerica|type=CDS|length=765bp|location=Sequence derived from alignment at sc0002859:15642..16766 (Clytia hemisphaerica)
ATGTCTATGTTAGAAGCTGACATCAGAGAAAATGTCAACAACCTTCCAAA
ATCTCTCACTGGTGCACAAGGATTCGTTTCCACAAAGTCGTTTATCTCCT
TGGAGATGACACAATGGTCCGTTTCAAAGTTGAAAGATACATTGGCAACT
TTTCACTACGAAAAAACTAATCTTCTCAGCATGATGACATTGTCAGTTGA
GCATTTCCACGCAACTACTCACACTAAGCACGTCCTGATGACTCAGCTAC
AATATTCCCGAGAGTTTATGAGATCCGTTAaggaatctttaaaaagggGA
TATCCATGGTCTGCGTATTACTTTACGAACAGAAAAGGCAGTTGGTATCC
TCTTCCGGATAGTTTTTGTAATTTCAATGAGATAAACAAAATCCTTCCAC
CAAAAAATCTACCTACCAAGATCGAAAAGCGAGACGAAGAAACGCTGCAG
AACTGGGCGACAAACTACACGAGGGCTGTGCGTCAACGAACCGTCAGACA
GGAAACCACCATGTGTAAAATGGGTACCATGCCACATTATGTGTATACCA
CATCTGAAATCGAAGAGACTGCAAAGCAGACGGTGCCTTACAAAACAAAA
GCGAGCGAAGCCGGAAATGTGGAAGAGGAAAAGGAAGAGGAAGAAATACC
CGACAGATTTGATGAGTCAAGTGATGATGACTTTAGtgaagatgatgaag
aaaatgctTCAGATCGTCAAAGAACAGATGAAAATATCATTGGACTAGAT
AGAGGGTCATTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041423-exon-sc0002859-1491911889:15642..16766 | TCONS_00041423-exon-sc0002859-1491911889:15642..16766 | Clytia hemisphaerica | exon |
| TCONS_00041423-exon-sc0002859-1510915933:15642..16766 | TCONS_00041423-exon-sc0002859-1510915933:15642..16766 | Clytia hemisphaerica | exon |
| TCONS_00041423-exon-sc0002859-1575043694:15642..16766 | TCONS_00041423-exon-sc0002859-1575043694:15642..16766 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002859 | supercontig | sc0002859:15642..16766 . |
Blast
The following BLAST results are available for this feature:
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