TCONS_00041419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041419
Unique NameTCONS_00041419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041419 ID=TCONS_00041419|Name=TCONS_00041419|organism=Clytia hemisphaerica|type=transcript|length=595bp
ACAAGCTCAGGGGTCGAGGGAACCAAAAATTCTACAACTTGTGCCATGTG
CATAGATTGCTGCATGTTCTCTGCGGGTATGCAACCATTAAAACCTGGTA
CTCGATGATGGTTCCATGAATTGAGCAAATGTTCCACTGCGTCTTTTTAA
ATATACAACGTAAGCCAGGATAAACAAAACTTGAATACGGGATCACTTTC
ATCAAGAGTGTCCGTGATGTCATTAGCTATGATAGTGTTCAATTCACGTT
TAAGAGGGTAGTTCACGCGCGTATTTATCTCGGGCCAAAAGCGTTCAATA
ACGTTGTTTTTCGTCGAAGTTGTCATGCGAAAAGGTTCAGAAGTACCAAC
AAGCCTATGGTGTGACATAATAGTTTGNAAGAGGGTAGTTCACGCGCGTA
TTCATCTCGGGCCAAAAGCGTTCAATAACGTTGTTTTTCGTCGAAGTTGT
CATGCGAAAAGGTTCAGAAGTACCAACAAGCCTATGGTGTGACATAATAG
TTTGAGCGAAACTGACAAGACAGAATTCTTGACCATGGTCCATACGCACT
TGTTCCCATACACCATAAGTTAACATAGCTGGTCGAAAAATAAAT
Run BLAST on NCBI

transcript from alignment at sc0002855:10430..11024

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041419 ID=TCONS_00041419|Name=TCONS_00041419|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at sc0002855:10430..11024 (Clytia hemisphaerica)
ATTTATTTTTCGACCAGCTATGTTAACTTATGGTGTATGGGAACAAGTGC
GTATGGACCATGGTCAAGAATTCTGTCTTGTCAGTTTCGCTCAAACTATT
ATGTCACACCATAGGCTTGTTGGTACTTCTGAACCTTTTCGCATGACAAC
TTCGACGAAAAACAACGTTATTGAACGCTTTTGGCCCGAGATGAATACGC
GCGTGAACTACCCTCTTNCAAACTATTATGTCACACCATAGGCTTGTTGG
TACTTCTGAACCTTTTCGCATGACAACTTCGACGAAAAACAACGTTATTG
AACGCTTTTGGCCCGAGATAAATACGCGCGTGAACTACCCTCTTAAACGT
GAATTGAACACTATCATAGCTAATGACATCACGGACACTCTTGATGAAAG
TGATCCCGTATTCAAGTTTTGTTTATCCTGGCTTACGTTGTATATTTAAA
AAGACGCAGTGGAACATTTGCTCAATTCATGGAACCATCATCGAGTACCA
GGTTTTAATGGTTGCATACCCGCAGAGAACATGCAGCAATCTATGCACAT
GGCACAAGTTGTAGAATTTTTGGTTCCCTCGACCCCTGAGCTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025393XLOC_025393Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041419-exon-sc0002855-1491911889:10430..11024TCONS_00041419-exon-sc0002855-1491911889:10430..11024Clytia hemisphaericaexon
TCONS_00041419-exon-sc0002855-1510915933:10430..11024TCONS_00041419-exon-sc0002855-1510915933:10430..11024Clytia hemisphaericaexon
TCONS_00041419-exon-sc0002855-1575043694:10430..11024TCONS_00041419-exon-sc0002855-1575043694:10430..11024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002855supercontigsc0002855:10430..11024 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.166575	0.0900009	0	0.806	0.930327	1.23489	0.6554	0	0.378538	0	0.509688	0.184804	0	0.0935068	0.466729	0	0.426321	0	0.392978	0.375868	0	0.105384	0	1.93356	0.635892	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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