TCONS_00041409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041409
Unique NameTCONS_00041409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041409 ID=TCONS_00041409|Name=TCONS_00041409|organism=Clytia hemisphaerica|type=transcript|length=697bp
CactgactttgatttcatccccattcgaaattccatGCTTAAAAACTGCA
ATCCGAAACCATCCCCgctgggttttttaaccttcTACCCCCATTAGGGT
ttcaatttttatccccactaagCGAAAAACttccaccgggactgtgagac
aggggtgttagcatctttcgtgggactggtaaaaaattttcgttttgcca
tttttgataacttaagatcattgaaatagaactttaaagataacttttac
tTTTATGTACGAACCAGCAGGGTAGATTAGAGGNACACGTTTAACACCTT
GAGACGTGGCAGTATTTTGACCCCTCAAGATGAGCTGGAGTAATATATTT
AAACGATGGCAGTGAGAGACAATGGTACACACCTTTCGATCCTTGTTGAA
AGAAATGTACGTTATGTTGTTATCTTTGCATATCTACCCTCCTGTTCGAT
TTAGTTCAACACCAGTTATAGAAGAGGGGCAACCCTTGGGATCCGTagta
acacccctgtgtcacagacccgctgggaccccagccccactggaaaattg
agcaaaaattttgtccccgttgGGACAATACCCTTGAATAACAGCCCCac
tgactttgatttcatccccattcgaaattccatGCTTAAAAACTGCAATC
CGAAACCATCCCCgctgggttttttaaccttcTACCCCCATTAGGGT
Run BLAST on NCBI

transcript from alignment at sc0002850:4191..4887

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041409 ID=TCONS_00041409|Name=TCONS_00041409|organism=Clytia hemisphaerica|type=transcript|length=697bp|location=Sequence derived from alignment at sc0002850:4191..4887 (Clytia hemisphaerica)
ACCCTAATGGGGGTAgaaggttaaaaaacccagcGGGGATGGTTTCGGAT
TGCAGTTTTTAAGCatggaatttcgaatggggatgaaatcaaagtcagtG
GGGCTGTTATTCAAGGGTATTGTCCcaacggggacaaaatttttgctcaa
ttttccagtggggctggggtcccagcgggtctgtgacacaggggtgttac
tACGGATCCCAAGGGTTGCCCCTCTTCTATAACTGGTGTTGAACTAAATC
GAACAGGAGGGTAGATATGCAAAGATAACAACATAACGTACATTTCTTTC
AACAAGGATCGAAAGGTGTGTACCATTGTCTCTCACTGCCATCGTTTAAA
TATATTACTCCAGCTCATCTTGAGGGGTCAAAATACTGCCACGTCTCAAG
GTGTTAAACGTGTNCCTCTAATCTACCCTGCTGGTTCGTACATAAAagta
aaagttatctttaaagttctatttcaatgatcttaagttatcaaaaatgg
caaaacgaaaattttttaccagtcccacgaaagatgctaacacccctgtc
tcacagtcccggtggaaGTTTTTCGcttagtggggataaaaattgaaACC
CTAATGGGGGTAgaaggttaaaaaacccagcGGGGATGGTTTCGGATTGC
AGTTTTTAAGCatggaatttcgaatggggatgaaatcaaagtcagtG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025383XLOC_025383Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041409-exon-sc0002850-1491911889:4191..4887TCONS_00041409-exon-sc0002850-1491911889:4191..4887Clytia hemisphaericaexon
TCONS_00041409-exon-sc0002850-1510915933:4191..4887TCONS_00041409-exon-sc0002850-1510915933:4191..4887Clytia hemisphaericaexon
TCONS_00041409-exon-sc0002850-1575043694:4191..4887TCONS_00041409-exon-sc0002850-1575043694:4191..4887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002850supercontigsc0002850:4191..4887 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.744137	1.59154	0.249058	0.250579	1.608	1.63973	1.17384	1.99042	0.965671	0.740589	0.301231	1.18001	0.724562	1.75031	0.864378	0.38369	0.563436	0.175773	0.526059	0.82729	0.529361	0.113589	0.179854	0.313534	1.39635	1.09273	0.208199	0	0.3446	0.529429
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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