TCONS_00041406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041406
Unique NameTCONS_00041406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041406 ID=TCONS_00041406|Name=TCONS_00041406|organism=Clytia hemisphaerica|type=transcript|length=259bp
AGTATAAAGTGAAagtgccaaagctgaagaaaagttctttgtttgtttgt
tttaacatttagtTTCTGATGTATGTTtgtatatcagagtttagatgcat
ttggtttgttttggttttatccGGACTCTTGAATCAGCCTAACTCTCATG
TCCTATTTAAGGCCTCAGTTTCTCCTCATGGTCccttttcagttcttcat
ttcttagtgCTGACTGGTGTATTTTTTGCTCCTCCACCCGCCCCAGCATC
TCGGGAGCT
Run BLAST on NCBI

transcript from alignment at sc0002849:4920..5178

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041406 ID=TCONS_00041406|Name=TCONS_00041406|organism=Clytia hemisphaerica|type=transcript|length=259bp|location=Sequence derived from alignment at sc0002849:4920..5178 (Clytia hemisphaerica)
AGCTCCCGAGATGCTGGGGCGGGTGGAGGAGCAAAAAATACACCAGTCAG
cactaagaaatgaagaactgaaaaggGACCATGAGGAGAAACTGAGGCCT
TAAATAGGACATGAGAGTTAGGCTGATTCAAGAGTCCggataaaaccaaa
acaaaccaaatgcatctaaactctgatatacaAACATACATCAGAAacta
aatgttaaaacaaacaaacaaagaacttttcttcagctttggcactTTCA
CTTTATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025380XLOC_025380Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041406-exon-sc0002849-1491911889:4920..5178TCONS_00041406-exon-sc0002849-1491911889:4920..5178Clytia hemisphaericaexon
TCONS_00041406-exon-sc0002849-1510915933:4920..5178TCONS_00041406-exon-sc0002849-1510915933:4920..5178Clytia hemisphaericaexon
TCONS_00041406-exon-sc0002849-1575043694:4920..5178TCONS_00041406-exon-sc0002849-1575043694:4920..5178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002849supercontigsc0002849:4920..5178 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33306	0.649974	5.28277	5.16837	0.898856	1.42058	1.71387	4.8135	0	2.13476	1.37321	3.04409	1.32987	1.31029	4.54175	2.84316	1.50109	0.512856	0.708539	2.96574	1.77916	1.88602	1.38611	2.77919	0	3.83208	2.74184	0	2.13131	2.26121
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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