TCONS_00041402 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041402
Unique NameTCONS_00041402
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041402 ID=TCONS_00041402|Name=TCONS_00041402|organism=Clytia hemisphaerica|type=transcript|length=275bp
AAAGTTTTCGAAGATTGTCtgagttttgaaaaaagtagcGAGAATAATGG
AGTTTTTTACTAGCACGGATAAGAGATACAATGCGATTTCGGTAAAATTT
GTATCTTTCACGAAGAAATTTCTTAAGATCGGGTGAAGAATCAGGAACTT
TCATATAGTCGTCTTTGAGGCTATCTCTGATGTTCATCGACACAAGAATG
CCTTTGGTGATCCAGGGTTTGAGAAGGAGGTTAGCTTGACGTCTGGTCAA
CTGTTTCAGAGGAACATGCTTATCA
Run BLAST on NCBI

transcript from alignment at sc0002846:417..691

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041402 ID=TCONS_00041402|Name=TCONS_00041402|organism=Clytia hemisphaerica|type=transcript|length=275bp|location=Sequence derived from alignment at sc0002846:417..691 (Clytia hemisphaerica)
TGATAAGCATGTTCCTCTGAAACAGTTGACCAGACGTCAAGCTAACCTCC
TTCTCAAACCCTGGATCACCAAAGGCATTCTTGTGTCGATGAACATCAGA
GATAGCCTCAAAGACGACTATATGAAAGTTCCTGATTCTTCACCCGATCT
TAAGAAATTTCTTCGTGAAAGATACAAATTTTACCGAAATCGCATTGTAT
CTCTTATCCGTGCTAGTAAAAAACTCCATTATTCTCgctacttttttcaa
aactcaGACAATCTTCGAAAACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025376XLOC_025376Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041402-exon-sc0002846-1491911889:417..691TCONS_00041402-exon-sc0002846-1491911889:417..691Clytia hemisphaericaexon
TCONS_00041402-exon-sc0002846-1510915933:417..691TCONS_00041402-exon-sc0002846-1510915933:417..691Clytia hemisphaericaexon
TCONS_00041402-exon-sc0002846-1575043694:417..691TCONS_00041402-exon-sc0002846-1575043694:417..691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002846supercontigsc0002846:417..691 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.64286	0.515442	2.99239	4.09862	0	0	0.679564	1.2724	0	1.10344	0	0	0.351537	0.365075	0.300141	0	0	0.81341	0	0.587972	0	0.747823	0.606051	1.65297	0	1.01297	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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