TCONS_00041396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041396
Unique NameTCONS_00041396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041396 ID=TCONS_00041396|Name=TCONS_00041396|organism=Clytia hemisphaerica|type=transcript|length=460bp
TTTCCTGTTTCGATAGCCAACTGAATTGCTTTCCGAGTTGATAGCAATAT
TATGTTGTCTTATTAATCTTAGTAAAGATTAAAGTATGATGAGgatttta
tttaactttttatgaatcctgtttctcttttttaggtCAGAGTGATATCT
TTACACATACCTAGGCCTGGTGCATTGAAGACTTTATCTCAATAGgctaa
atttaaaaacataGCTTAGGTATGCTCCTCCAGTCCCGAATTTTAAGAGA
CGTTGCCAATGTATACTGGCATTATAATCAACCAGCGAATGGCTGAGGTT
ATTATTATCAACCAGAGAATGGCTGTTTTTGGGGTAAGGGTGTTTCCTTT
TTGGGGTGACTTTTAATATATCTACTGTTTGTTATcgtaaaattgaatta
tttatATGGTATCTGCTAAAAAAGGGAATGCTCTACTGAAGCTTAATACT
TTCTCCTAAG
Run BLAST on NCBI

transcript from alignment at sc0002844:8556..9015

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041396 ID=TCONS_00041396|Name=TCONS_00041396|organism=Clytia hemisphaerica|type=transcript|length=460bp|location=Sequence derived from alignment at sc0002844:8556..9015 (Clytia hemisphaerica)
CTTAGGAGAAAGTATTAAGCTTCAGTAGAGCATTCCCTTTTTTAGCAGAT
ACCATataaataattcaattttacgATAACAAACAGTAGATATATTAAAA
GTCACCCCAAAAAGGAAACACCCTTACCCCAAAAACAGCCATTCTCTGGT
TGATAATAATAACCTCAGCCATTCGCTGGTTGATTATAATGCCAGTATAC
ATTGGCAACGTCTCTTAAAATTCGGGACTGGAGGAGCATACCTAAGCtat
gtttttaaatttagcCTATTGAGATAAAGTCTTCAATGCACCAGGCCTAG
GTATGTGTAAAGATATCACTCTGacctaaaaaagagaaacaggattcata
aaaagttaaataaaatcCTCATCATACTTTAATCTTTACTAAGATTAATA
AGACAACATAATATTGCTATCAACTCGGAAAGCAATTCAGTTGGCTATCG
AAACAGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025370XLOC_025370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041396-exon-sc0002844-1491911889:8556..9015TCONS_00041396-exon-sc0002844-1491911889:8556..9015Clytia hemisphaericaexon
TCONS_00041396-exon-sc0002844-1510915933:8556..9015TCONS_00041396-exon-sc0002844-1510915933:8556..9015Clytia hemisphaericaexon
TCONS_00041396-exon-sc0002844-1575043694:8556..9015TCONS_00041396-exon-sc0002844-1575043694:8556..9015Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002844supercontigsc0002844:8556..9015 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.209622	0.175107	0	0.418159	1.13219	1.04545	0.186411	1.13723	0.683644	0.581602	1.06297	0	0.234977	0.0917926	0.637219	0.458228	0.445156	0	0.166378	0.597543	1.83401	0.353007	0.164674	0.986071	0	0.824053	0.221961	0.171664	0.707048
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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