TCONS_00041393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041393
Unique NameTCONS_00041393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041393 ID=TCONS_00041393|Name=TCONS_00041393|organism=Clytia hemisphaerica|type=transcript|length=847bp
AAGCAAACCTCAAGTAAGCAAGCAAGCTGTCTTTTCTTAACTGAGCTTTt
gtgagcataaactttcgtaAATGTCCCTCTCAAGACTTTCCGACAAAGGT
AGACGTCCATTCAGCATTTAGCTTGTTATCCTATAGATTAGACATTATAT
TATTAAAGCCAAAGATGGAAGTAAGCTTTCTTGGAAAGGAACTCAAGCTT
GACAACGAAGAAGATGGTGAAGAAATTGCAAACGCTATCAAAAATTGTAG
AGACATGGAAACTCTAAAACTTCAAGGGAACACGCTTGGAGTTGGTGCTA
GTAAGGTTATATCAGAAGCCTTGAAACAGCAGAGTGCATTCAAGAAAGCA
TTATGGAGTGATATGTATACTGGAAGGCTTCGTTCTGAAATTCCCAAGTC
TTTGGAATTGCTTAGTGAGGGCATTATAACAGCTGGTGCTAAACTGACAG
TCTTGGATTTGAGTGACAATGCATTTGGTCCAGATGGAGTGGACGGAATC
AAGAAGCTTTTACGCAGCGAATCATCTTATTTATTACACACTTTAAAACT
GAATAACAATGGTTTGGGAATTGGGGGTGGAAAGGTAAAAAAACTAATCC
ATCAAATTTTTGTATGACATAACCTAATTTTTACAACCCAACTTTTACGa
ctttcttttatcattttattatcTGGCatccgatgtagaaattttcttcc
gacacgctaaagctctaaaggtcgggaaaattttcaacatctggaagaaa
tacattacgNtaccatcggagagaaatagtagtCATCCATTGATGTGCCG
ACATAAGTTTAGCCCTCATTTTCGGGGCCGTGCTGAACGCTCAAAAA
Run BLAST on NCBI

transcript from alignment at sc0002843:5775..12021+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041393 ID=TCONS_00041393|Name=TCONS_00041393|organism=Clytia hemisphaerica|type=transcript|length=6247bp|location=Sequence derived from alignment at sc0002843:5775..12021+ (Clytia hemisphaerica)
AAGCAAACCTCAAGTAAGCAAGCAAGCTGTCTTTTCTTAACTGAGCTTTt
gtgagcataaactttcgtaAATGTCCCTCTCAAGACTTTCCGACAAAGGT
ATTTAATTTGGGAAATGAATATTTCTCAcgattggcttggtatttttttt
tgatttttgcacaagtaaaaggaaaaaatctggagcccaattttcaaata
aataatCTTTTGGGctaaaagtgcctaaaaatttgtaaaaatgggaTTAT
TTggagttttttcagattttttttcataatgacAGGAGGCAATGTTCTTT
CAAAAATGGCTGAAGCCgttttttccagaaaattttttttggctgtagaa
atcagattttcttatttggggaaattcccttttgtcatttttagggaaaa
tgagcatttctcgcaAATGCCTTGATTATTATTTTCTCATGTTTTAGTTT
GCATTTTCTTACTAATGCTGCCATTTTTTCTATTCTCTTATTACATTTAC
CTTCCAGGTAGACGTCCATTCAGCATTTAGCTTGTTATCCTATAGATTAG
ACATTATATTATTAAAGCCAAAGATGGAAGTAAGCTTTCTTGGAAAGGAA
CTCAAGCTTGACAACGAAGAAGATGGTAAGTTTATTGTTTATGTTATGTT
TTCCAGAATTATTTTCAAGCAGGGAAATTTGttactttgtaaaaaaaata
aggaTTGGAATTATAGCTTCACTGATGTCAGGTTTaggcaaaaaaatgta
ttttgaaataaaaaaatgcaacttATGGATATCTAGTAAATCTACCCAGA
AATTCAAGTCAGTAAAGGACCTCTCAAAGAGGTTGCAATTAGACGGGCAG
GCTACCAACCTGCAGACCTGATTTGGCCGACTTATTATTCTGGATTATCT
TTGCGCATTGGGTTTACACTTAGTAAACATTAAAATTTACTAAACATTCG
TGACTTCTCAAGCGGTTTAAAGTACCTGAAAATCAGACCGGTCTTGGTCC
GGTATTACGATTGGTCTAGTAGTGGTCAAACTTTTTGTTTTGTACGGCCT
TCAGACCTTCTCAAAATATGATCTCTAACAGTCCTGGCCGCTTCTAGACG
CTCATGGCTGCTTGTTAGACCAGTCCTGACCGCTCGTTAGACCGGTCCGC
TCGTTAGACCAGTCCAGGCCGCTCGTTAGACCGGTCCAGGCCGCTAGTTA
GTGATTTTTAGGAACGattacatcaaaaaattcatGTAAAAGGATGTCGA
CCAGACGATCAGGGCCAGTCTGGGACCGGACGCTTCGCAGCGGCAGCTAA
ATTAACTAGACTCGTAGTGgccttttggtaaatttttaccGTTCATTTAC
CGGCCCTAAAAAGACCGTCTAAAGACCGGTcccattttcaggtactttaa
atcgcttggggGGGGGGTCACATTTGTTAATAAGTgattatcaaaaaata
aaaaaataaattttatgctGGCGCAATCTTGAGGCCATGCAGTGTATTGC
AGATTTTATTTAAATACACATTCTagaaaaactttgtttttatatcTAGT
TGTTAGTAATAAGTATAATTATCTTTTGGGTAAATTAGAATTGTGAAAAT
GTGTTAATTGTTGGAAATTGGTCGGTATTAATTTTGTTTCTAATTGTGTG
AATTTTTAAGTCAGATTTTCTAAACTGAATTCGTGTTCGTGTCTACATTT
CGAAATTATTTCTGACCTCTTGTTTAATTAATCCCCTtagtttttgtaaa
atataatttCGAACTTTTCCTGTAACCAAAGTAGACATCGCTTTGTGATG
TTGCTGTGGGCAAGTACCCTTTTCTAAGTAAACcattttttctttggaat
tccagatataatgttgaaattgttgtcttgtttttgtattttttctaaGC
CAATGTAAACTTTGTCAGGTACAGAGGGGATGCATTTGCAAATAATGCTT
TTTTCTCTGTATTTTTCTTCTAAAagacaattttgtttttgtctgAAACA
GACAAACATGACGTTTTTAATTCAAAACCTGAAATAGAGCTTCTTTTATC
TAGGAGCTGTGTaggcattttttgaaaagtcaaTATCGCTGAATAATATA
AAAGCCCCACAGCCACACCAAATGCTAATATTACTATATACTAGCCTATA
ACGATAAGAAGAATATGAATGTTAACATTTTTACGACAGGGAACTAAACA
CTGCCAATCAAAGTGTTGTGAGCTccatgttttattttcaaatagtGCTA
AGGTTTCTTTATTAGATATTGGTATTTTTTGGGTTTTGCGATGTAATTTG
CGATTAAGCGGGATCAAATTTACATATACTTACCTTACATAAATGGTTTA
GTAGAATAAAATACAACataaaatgtttagaaaaattTAAGTGCTTACTG
AGAGAGTGGCAAACAAAAGGGGAAGCTTTTAATAGACAAAaaagatttta
gttttttttatttactagaAAGAGATTGGACTTTTTGAtaatagtgaggt
ctgttagcacatacaaacgtaagaatactacagatggtgataaaagcatg
aaatttggcacagatgatccctTGATTTTAAACAACACCAAAGTAACACC
AATTTTGCCACATgaccacctgccagatgacgttatcaggtggctgggca
aagaattatttttttgaaaatattcaaaatctgatggttccagcggaaag
agcatgaaaatgCTGATGAAAACTGAGGTATAAagcatgccttgaaaatc
ttcttatcaaaagttatggaggttgaaagtttNACTGAGGTATAAagcat
gccttgaaaatcttcttatcaaaagttatggaggttgaaagttttgtgat
gcAGCCTACTTTTTTCAAGAAAGAAGGAAAGGATAAAAGAGGAAACAAAG
AGTTTTATTAAAATTCCTTGCTTTTTCTCTCTGCCTTTCAATTCTTTTaa
ctttgcttaaaaaattccCTCcacatttttaatttcaaaatacatttttc
atCGCCAAAACCTGAATTTGCTTCCCAGTACAAAGCTATAATTCAAACCC
TGGAATTATTCCAATCGATGGTTAGGAATCAAGTATGGTGATAGAGGTTA
TTTTGCATCAAGGGAGACCAGGGGTGTGCCAATCATTTTATAACCAGATT
TGATATATCtcaatttgaaaagatttttttaatgataGTCGTGAAAGATA
TCAATGTCTGTAAAAGTAGGAGGTGAATTTGTAAGTTTAAAAGCcagttt
taaatgttttctgcAATTACTAAGATATCTTTGCCAGCAGGGATCAGAAA
AGGCCAATTAACAGGAACATTCATTTGCTTAATCATTATATGTATTCACT
TTTTCCTCTCTTTATATGAAGAGTAGGCTAAATAAGAGGTAACTTAGCGG
TTAACCATCTCTAATTTAGGGCCCATAGTAAACGCCTATTCACCTTCAGT
CATTTGCAAGGGCCACTGTACCTTTAGATTAAAAAACTTGAATCTATTTT
ACTTCTGTGCTTTTAATGCAATGCGCAAGACTCAAAATAACTCTATTTCA
TTATGGTTTTAAAGGTGAAGAAATTGCAAACGCTATCAAAAATTGTAGAG
ACATGGAAACTCTAAAACTTCAAGGGAACACGCTTGGAGTTGGTGCTAGT
AAGGTTATATCAGAAGCCTTGAAACAGCAGAGTGCATTCAAGGTGAGTga
gtaatttttttgtaaatttgttgtAAATTTTTAGTGATAGAATCCAGTAC
TACACTGTCAGTAACCTAAAAAATCAACTAATTCAGCTTCCTTTGTTGAA
ATATAAAGTATATTCAAGCGCAGACAATTCACTTTCCCATCGAATTCAGG
CTCGACTTTATATCTCAtgcaatttgaagaaaaaaagttaaaaagccAAC
TTTATTAAAATTCATCTTGTAAACCTTTAATTTCATGCTCGCCTGAATGC
TTATGTTGtgcttttatcaaaaatggTAAATCTGTACATGGGGCGCCAAA
AGGGtttttaataccaacttttttttagatACCAACATTTTTAACGcaaa
aatcattttataatatTACTAAAGTTgttcaataatttcttttacCATTC
AAGTGTAAAGGGGCCCTTAAAATATTTCTGCGGAAGAAATGGGAAGACAG
TTATCAGGAAGTAGGCCTGGAATTTCGAATTATGAGACTTTGATTCATAC
TTTTCAGTTAGGAATTTTNCTGCGGAAGAAATGGGAAGACAGTTATCAGG
AAGTAGGCCTGGAATTTCGAATTATGAGACTTTGATTCATACTTTTCAGT
TAGGAATTTTAGGATTACGAGGATTGTGACATCATAAATATAGAAAATAT
GTCATTTCCTATCACAAATtcgattttgaaaataaaagatttccagattt
tttctttaaaaaaagtttcccAGTTACGTAACTCTGATTTCTattccaaa
tttttcaaaaggtttttgAGTTACGTTACGTTAGTTATAGTAAGCTGATT
GAACAGGCGATTGCATGAGTGTTttagaggttttgtttttaaagaatgat
atcgtttgcttactcatcaattttaattcacaagctttttcacattggat
tgacacggatgtggagcaagattgatcagaacgagaaaaagaaaaacatt
tttttgcttattatcAGCATATTATAACattagcaagacactgtcctgat
atgaaatatNCTTTTTTGCTTATTATCAGCAtattataacaatagcaaga
cactgtcctgatatgaaatatgtgtctgatatgaaacggaaacacttatg
taaaaagaaaacctttaagattATGTCTACATTGCACTGGTATTGGAAAA
AAGAAGTTGGTGTcggaaaaaaaaagttgatatcgAAAAAAAGTTTGGCG
CGCCATAAATTTGAGCCTGTTTAAAATTACAGTACCGTAGCAACNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTaaacaaaccccccccccccccccgccaatatgaaaatgcttcct
acggcactgaattAGAAGATAAGGAGGGGAAAAGACAAAccttttccttt
attttttaattaaagtaAAGGGTGTCTGGTTAATTAAAAAACTTTAACTT
TTTTAGAAAGCATTATGGAGTGATATGTATACTGGAAGGCTTCGTTCTGA
AATTCCCAAGTCTTTGGTGAGTATCACctaggtttttttattttaataga
agTTGCTCACTCTGTCAAGATCAAAAGGCTACAATATGCTTCTTAAATCT
TTAAATCTATACCTGATATGGCTGTCTGTAtgtctgggggtgttttttga
tttttgaagcctggGCATagtttttctccaaaatgaGGCTAAGACTTTGG
GGCAAGCCTGAAACTTggttgttccttgggtgaatatctgggagtgtttt
ttcatttttcaaatgattTCATTTTGCAGAGCCTGGGCACTAATCTTTTG
GTTTATTTTGCTACAGTTGGACCAATGAATAATTTGGAGCTACTGAAGTT
TAGCCCATTATGTTGCGCAGGTTCGATCTCGATATGTAAATTACAGAAAA
GATTTAACACATTTGCAGAATACTGTAATTGGGTTTTCCCTTTGCTCACA
GTTGCTCAcaaattttaattgaaattaCCAGTCAAGTTATATTTTCAACA
ATAGGAATTGCTTAGTGAGGGCATTATAACAGCTGGTGCTAAACTGACAG
TCTTGGATTTGAGTGACAATGCATTTGGTCCAGATGGAGTGGACGGAATC
AAGAAGCTTTTACGCAGCGAATCATCTTATTTATTACACACTTTAAAACT
GAATAACAATGGTTTGGGAATTGGGGGTGGAAAGGTAAAAAAACTAATCC
ATCAAATTTTTGTATGACATAACCTAATTTTTACAACCCAACTTTTACGa
ctttcttttatcattttattatcTGGCatccgatgtagaaattttcttcc
gacacgctaaagctctaaaggtcgggaaaattttcaacatctggaagaaa
tacattacgNtaccatcggagagaaatagtagtCATCCATTGATGTGCCG
ACATAAGTTTAGCCCTCATTTTCGGGGCCGTGCTGAACGCTCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025367XLOC_025367Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041393-exon-sc0002843-1491911889:5775..5872TCONS_00041393-exon-sc0002843-1491911889:5775..5872Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1510915933:5775..5872TCONS_00041393-exon-sc0002843-1510915933:5775..5872Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1575043694:5775..5872TCONS_00041393-exon-sc0002843-1575043694:5775..5872Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1491911889:6282..6399TCONS_00041393-exon-sc0002843-1491911889:6282..6399Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1510915933:6282..6399TCONS_00041393-exon-sc0002843-1510915933:6282..6399Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1575043694:6282..6399TCONS_00041393-exon-sc0002843-1575043694:6282..6399Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1491911889:9339..9466TCONS_00041393-exon-sc0002843-1491911889:9339..9466Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1510915933:9339..9466TCONS_00041393-exon-sc0002843-1510915933:9339..9466Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1575043694:9339..9466TCONS_00041393-exon-sc0002843-1575043694:9339..9466Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1491911889:11031..11090TCONS_00041393-exon-sc0002843-1491911889:11031..11090Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1510915933:11031..11090TCONS_00041393-exon-sc0002843-1510915933:11031..11090Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1575043694:11031..11090TCONS_00041393-exon-sc0002843-1575043694:11031..11090Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1491911889:11579..12021TCONS_00041393-exon-sc0002843-1491911889:11579..12021Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1510915933:11579..12021TCONS_00041393-exon-sc0002843-1510915933:11579..12021Clytia hemisphaericaexon
TCONS_00041393-exon-sc0002843-1575043694:11579..12021TCONS_00041393-exon-sc0002843-1575043694:11579..12021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002843supercontigsc0002843:5775..12021 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00273128	1.96795	2.40756	83.4276	81.0097	11.5857	14.7257	6.08684	6.45941	8.54274	6.08703	1.26852	1.27128	3.43511	3.53587	3.14789	0.0447327	0	1.26764	4.07211	0.760245	2.70205	5.2248	5.84494	5.07457	10.541	2.22386	2.97383	3.67657
Blast
[Close]
BLAST of TCONS_00041393 vs. Swiss-Prot (Human)
Match: RAGP1 (Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 6.248e-37
Identity = 65/124 (52.42%), Postives = 94/124 (75.81%), Query Frame = 3 
Query:  168 EVSFLGKELKLDNEEDGEEIANAIKNCRDMETLKLQGNTLGVGASKVISEALKQQSAFKKALWSDMYTGRLRSEIPKSLELLSEGIITAGAKLTVLDLSDNAFGPDGVDGIKKLLRSESSYLLH 539
            ++SF GK LKL+  ED +++   I++   +E L+L+GNT+GV A++VI++AL+++S  K+  WSDM+TGRLR+EIP +L  L EG+ITAGA+L  LDLSDNAFGPDGV G + LL+S + + L 
Sbjct:   22 QLSFKGKSLKLNTAEDAKDVIKEIEDFDSLEALRLEGNTVGVEAARVIAKALEKKSELKRCHWSDMFTGRLRTEIPPALISLGEGLITAGAQLVELDLSDNAFGPDGVQGFEALLKSSACFTLQ 145
The following BLAST results are available for this feature:
BLAST of TCONS_00041393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAGP16.248e-3752.42Ran GTPase-activating protein 1 OS=Homo sapiens GN... [more]
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