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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041391 ID=TCONS_00041391|Name=TCONS_00041391|organism=Clytia hemisphaerica|type=transcript|length=1280bp AAAGCAAAAACAAGATGGCCGCCAAAGAACAAGAACAAAAAATGAAACCT ACCAGGTAGCCAATATAAAAATACTGTGAATGAATTGACTCTGATGAGTG ACTTGAGGTTGAAGTTGATTATTGACACAAAATTGATTTACTTTTAAAGT TAGAGCCTTATGAGTTATGATGCCATTATGGTCAGTCAGCATGACATGAC AAAAAATGGTAGCTCTGAGATGTGACTGAAGTGAGGCCTTAAATAGACTG AGTTCACACTGTGACATGATACTGAAAATGAGGCCATGGAAACCAGGTGT GCCTAACATACTatggcgaatagaatatctcacAAATTactatatgcata aaactgacaaattcctttctttcttattcttcggtgacgtcaccatcaat cctgacttgacagtaagaacaatggagaaccaaatttgacaatgcataat tattaagAACGACCAAGAAAGTTTGTTTGATGCTTTGTGAAGATTCACTC GTTCACCAGCTCTTGCGGTGAGCCGTCACAGGTAGACGTCCATTCAGCAT TTAGCTTGTTATCCTATAGATTAGACATTATATTATTAAAGCCAAAGATG GAAGTAAGCTTTCTTGGAAAGGAACTCAAGCTTGACAACGAAGAAGATGG TGAAGAAATTGCAAACGCTATCAAAAATTGTAGAGACATGGAAACTCTAA AACTTCAAGGGAACACGCTTGGAGTTGGTGCTAGTAAGGTTATATCAGAA GCCTTGAAACAGCAGAGTGCATTCAAGAAAGCATTATGGAGTGATATGTA TACTGGAAGGCTTCGTTCTGAAATTCCCAAGTCTTTGGAATTGCTTAGTG AGGGCATTATAACAGCTGGTGCTAAACTGACAGTCTTGGATTTGAGTGAC AATGCATTTGGTCCAGATGGAGTGGACGGAATCAAGAAGCTTTTACGCAG CGAATCATCTTATTTATTACACACTTTAAAACTGAATAACAATGGTTTGG GAATTGGGGGTGGAAAGGTAAAAAAACTAATCCATCAAATTTTTGTATGA CATAACCTAATTTTTACAACCCAACTTTTACGactttcttttatcatttt attatcTGGCatccgatgtagaaattttcttccgacacgctaaagctcta aaggtcgggaaaattttcaacatctggaagaaatacattacgNtaccatc ggagagaaatagtagtCATCCATTGATGTGCCGACATAAGTTTAGCCCTC ATTTTCGGGGCCGTGCTGAACGCTCAAAAA Run BLAST on NCBI transcript from alignment at sc0002843:3981..12021+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041391 ID=TCONS_00041391|Name=TCONS_00041391|organism=Clytia hemisphaerica|type=transcript|length=8041bp|location=Sequence derived from alignment at sc0002843:3981..12021+ (Clytia hemisphaerica) AAAGCAAAAACAAGATGGCCGCCAAAGAACAAGAACAAAAAATGAAACCT
ACCAGGTAGCCAATATAAAAATACTGTGAATGAATTGACTCTGATGAGTG
ACTTGAGGTTGAAGTTGATTATTGACACAAAATTGATTTACTTTTAAAGT
TAGAGCCTTATGAGTTATGATGCCATTATGGTCAGTCAGCATGACATGAC
AAAAAATGGTAGCTCTGAGATGTGACTGAAGTGAGGCCTTAAATAGACTG
AGTTCACACTGTGACATGATACTGAAAATGAGGCCATGGAAACCAGGTGT
GCCTAACATACTatggcgaatagaatatctcacAAATTactatatgcata
aaactgacaaattcctttctttcttattcttcggtgacgtcaccatcaat
cctgacttgacagtaagaacaatggagaaccaaatttgacaatgcataat
tattaagAACGACCAAGAAAGTTTGTTTGATGCTTTGTGAAGATTCACTC
GTTCACCAGCTCTTGCGGTGAGCCGTCACAGGTATACAGGGCTTCAAAAC
TGCACGTTTTATACTTTCACAAAACGCATCTTTTTACAATCTTTTATCTC
TGATGGGGTCTAATTAAATCTGCTTGGCCTACCTGCACAACAATAGGGTA
ACTAGTTACTATTTCCGTCATCATATAGGAGTATATTTTCGTAAATGGct
gaaatcctgtgtaggttgaAAACTGAAGAACATATCATGTGTTTCGTGAA
AATACCTATTTATACTCATATTGAGTCGCTACTTCTTTCTATCTTGACTC
ATTATTGAGTTACCATTCTTCCAGAGGTTGTTTTAGATCTTTAGTTTATT
TAACTTTGATAAATATTGATTTCATCGTATTTTTTCCATTTCTTAACAAA
CCTGATAGCTTTCTTGTGGATATTCATTCTAGATATTTGCTATGATTTGT
CTTGTCCTTCTGTTTCGTGGGTTTTGTTCTCCATGTTTCTATTTGAATAG
TTAAAGGTTTCATACTTCTAGACTAAATATAATCCTATTATTCCTATGAT
CATTCTGAAGTAGGGTGTCGGAATTAGCAGAGGGATGTCGACATTTAACC
TACTTACATTAATGTCAAAACGCCCATAATGATCATCCAACAGAAGGCAA
GTTAGTTGCAAGTTCTTTTTATTGAAATTTAGCCTTCTTTTATTTAGACA
GTGGTTAATTAATTATCATTTTTAATGACTGAAACGAAAATATTGATATA
TCATGTAATAATTATGCATTGCTTCTGTTTAATTTGATAGGTAGATTTTT
ATCTTTTTCAAGCACTTTCGGAAAGCAACTTTTTTATTCCATTGAGCATA
TCTTTTGATCTAATGAATCGAATTTAATAGATGACCCATCAAAATTTAAG
TTTATCTTTCTTCTTTCCAATGAAATAAGAATGGTTCTTTTAAGATTTTC
CTTGTGTAACTAACCCATACTTAAAAACAAATATTAAGCACCTTGAAGTA
GAGAGTCACAGCTGTATTCCTTAAGAACATACCAGGCTATTTCTTTACAT
TTGTGGTTGGGTTCCAGGACTTAAGGAATATGGAGGATTTCAAAAATTGA
GGTTTTTGGTCGGAAAGTGAAAAAAAGGTTCCAAATTTAGCTACCAACCG
ACCAACCGACCAACCAACCCATTTTTTAAAGCTTCTTCTTCTTCTTGGTT
CCTACCAAGCAATCAATTAGGCCTGGCCTAGGCTAGAGGGAGAAATACTT
CTTTAATAGACCGATTCAACATAATCCAGTTAAATACAATCTTCAAGCAA
ACCTCAAGTAAGCAAGCAAGCTGTCTTTTCTTAACTGAGCTTTtgtgagc
ataaactttcgtaAATGTCCCTCTCAAGACTTTCCGACAAAGGTATTTAA
TTTGGGAAATGAATATTTCTCAcgattggcttggtatttttttttgattt
ttgcacaagtaaaaggaaaaaatctggagcccaattttcaaataaataat
CTTTTGGGctaaaagtgcctaaaaatttgtaaaaatgggaTTATTTggag
ttttttcagattttttttcataatgacAGGAGGCAATGTTCTTTCAAAAA
TGGCTGAAGCCgttttttccagaaaattttttttggctgtagaaatcaga
ttttcttatttggggaaattcccttttgtcatttttagggaaaatgagca
tttctcgcaAATGCCTTGATTATTATTTTCTCATGTTTTAGTTTGCATTT
TCTTACTAATGCTGCCATTTTTTCTATTCTCTTATTACATTTACCTTCCA
GGTAGACGTCCATTCAGCATTTAGCTTGTTATCCTATAGATTAGACATTA
TATTATTAAAGCCAAAGATGGAAGTAAGCTTTCTTGGAAAGGAACTCAAG
CTTGACAACGAAGAAGATGGTAAGTTTATTGTTTATGTTATGTTTTCCAG
AATTATTTTCAAGCAGGGAAATTTGttactttgtaaaaaaaataaggaTT
GGAATTATAGCTTCACTGATGTCAGGTTTaggcaaaaaaatgtattttga
aataaaaaaatgcaacttATGGATATCTAGTAAATCTACCCAGAAATTCA
AGTCAGTAAAGGACCTCTCAAAGAGGTTGCAATTAGACGGGCAGGCTACC
AACCTGCAGACCTGATTTGGCCGACTTATTATTCTGGATTATCTTTGCGC
ATTGGGTTTACACTTAGTAAACATTAAAATTTACTAAACATTCGTGACTT
CTCAAGCGGTTTAAAGTACCTGAAAATCAGACCGGTCTTGGTCCGGTATT
ACGATTGGTCTAGTAGTGGTCAAACTTTTTGTTTTGTACGGCCTTCAGAC
CTTCTCAAAATATGATCTCTAACAGTCCTGGCCGCTTCTAGACGCTCATG
GCTGCTTGTTAGACCAGTCCTGACCGCTCGTTAGACCGGTCCGCTCGTTA
GACCAGTCCAGGCCGCTCGTTAGACCGGTCCAGGCCGCTAGTTAGTGATT
TTTAGGAACGattacatcaaaaaattcatGTAAAAGGATGTCGACCAGAC
GATCAGGGCCAGTCTGGGACCGGACGCTTCGCAGCGGCAGCTAAATTAAC
TAGACTCGTAGTGgccttttggtaaatttttaccGTTCATTTACCGGCCC
TAAAAAGACCGTCTAAAGACCGGTcccattttcaggtactttaaatcgct
tggggGGGGGGTCACATTTGTTAATAAGTgattatcaaaaaataaaaaaa
taaattttatgctGGCGCAATCTTGAGGCCATGCAGTGTATTGCAGATTT
TATTTAAATACACATTCTagaaaaactttgtttttatatcTAGTTGTTAG
TAATAAGTATAATTATCTTTTGGGTAAATTAGAATTGTGAAAATGTGTTA
ATTGTTGGAAATTGGTCGGTATTAATTTTGTTTCTAATTGTGTGAATTTT
TAAGTCAGATTTTCTAAACTGAATTCGTGTTCGTGTCTACATTTCGAAAT
TATTTCTGACCTCTTGTTTAATTAATCCCCTtagtttttgtaaaatataa
tttCGAACTTTTCCTGTAACCAAAGTAGACATCGCTTTGTGATGTTGCTG
TGGGCAAGTACCCTTTTCTAAGTAAACcattttttctttggaattccaga
tataatgttgaaattgttgtcttgtttttgtattttttctaaGCCAATGT
AAACTTTGTCAGGTACAGAGGGGATGCATTTGCAAATAATGCTTTTTTCT
CTGTATTTTTCTTCTAAAagacaattttgtttttgtctgAAACAGACAAA
CATGACGTTTTTAATTCAAAACCTGAAATAGAGCTTCTTTTATCTAGGAG
CTGTGTaggcattttttgaaaagtcaaTATCGCTGAATAATATAAAAGCC
CCACAGCCACACCAAATGCTAATATTACTATATACTAGCCTATAACGATA
AGAAGAATATGAATGTTAACATTTTTACGACAGGGAACTAAACACTGCCA
ATCAAAGTGTTGTGAGCTccatgttttattttcaaatagtGCTAAGGTTT
CTTTATTAGATATTGGTATTTTTTGGGTTTTGCGATGTAATTTGCGATTA
AGCGGGATCAAATTTACATATACTTACCTTACATAAATGGTTTAGTAGAA
TAAAATACAACataaaatgtttagaaaaattTAAGTGCTTACTGAGAGAG
TGGCAAACAAAAGGGGAAGCTTTTAATAGACAAAaaagattttagttttt
tttatttactagaAAGAGATTGGACTTTTTGAtaatagtgaggtctgtta
gcacatacaaacgtaagaatactacagatggtgataaaagcatgaaattt
ggcacagatgatccctTGATTTTAAACAACACCAAAGTAACACCAATTTT
GCCACATgaccacctgccagatgacgttatcaggtggctgggcaaagaat
tatttttttgaaaatattcaaaatctgatggttccagcggaaagagcatg
aaaatgCTGATGAAAACTGAGGTATAAagcatgccttgaaaatcttctta
tcaaaagttatggaggttgaaagtttNACTGAGGTATAAagcatgccttg
aaaatcttcttatcaaaagttatggaggttgaaagttttgtgatgcAGCC
TACTTTTTTCAAGAAAGAAGGAAAGGATAAAAGAGGAAACAAAGAGTTTT
ATTAAAATTCCTTGCTTTTTCTCTCTGCCTTTCAATTCTTTTaactttgc
ttaaaaaattccCTCcacatttttaatttcaaaatacatttttcatCGCC
AAAACCTGAATTTGCTTCCCAGTACAAAGCTATAATTCAAACCCTGGAAT
TATTCCAATCGATGGTTAGGAATCAAGTATGGTGATAGAGGTTATTTTGC
ATCAAGGGAGACCAGGGGTGTGCCAATCATTTTATAACCAGATTTGATAT
ATCtcaatttgaaaagatttttttaatgataGTCGTGAAAGATATCAATG
TCTGTAAAAGTAGGAGGTGAATTTGTAAGTTTAAAAGCcagttttaaatg
ttttctgcAATTACTAAGATATCTTTGCCAGCAGGGATCAGAAAAGGCCA
ATTAACAGGAACATTCATTTGCTTAATCATTATATGTATTCACTTTTTCC
TCTCTTTATATGAAGAGTAGGCTAAATAAGAGGTAACTTAGCGGTTAACC
ATCTCTAATTTAGGGCCCATAGTAAACGCCTATTCACCTTCAGTCATTTG
CAAGGGCCACTGTACCTTTAGATTAAAAAACTTGAATCTATTTTACTTCT
GTGCTTTTAATGCAATGCGCAAGACTCAAAATAACTCTATTTCATTATGG
TTTTAAAGGTGAAGAAATTGCAAACGCTATCAAAAATTGTAGAGACATGG
AAACTCTAAAACTTCAAGGGAACACGCTTGGAGTTGGTGCTAGTAAGGTT
ATATCAGAAGCCTTGAAACAGCAGAGTGCATTCAAGGTGAGTgagtaatt
tttttgtaaatttgttgtAAATTTTTAGTGATAGAATCCAGTACTACACT
GTCAGTAACCTAAAAAATCAACTAATTCAGCTTCCTTTGTTGAAATATAA
AGTATATTCAAGCGCAGACAATTCACTTTCCCATCGAATTCAGGCTCGAC
TTTATATCTCAtgcaatttgaagaaaaaaagttaaaaagccAACTTTATT
AAAATTCATCTTGTAAACCTTTAATTTCATGCTCGCCTGAATGCTTATGT
TGtgcttttatcaaaaatggTAAATCTGTACATGGGGCGCCAAAAGGGtt
tttaataccaacttttttttagatACCAACATTTTTAACGcaaaaatcat
tttataatatTACTAAAGTTgttcaataatttcttttacCATTCAAGTGT
AAAGGGGCCCTTAAAATATTTCTGCGGAAGAAATGGGAAGACAGTTATCA
GGAAGTAGGCCTGGAATTTCGAATTATGAGACTTTGATTCATACTTTTCA
GTTAGGAATTTTNCTGCGGAAGAAATGGGAAGACAGTTATCAGGAAGTAG
GCCTGGAATTTCGAATTATGAGACTTTGATTCATACTTTTCAGTTAGGAA
TTTTAGGATTACGAGGATTGTGACATCATAAATATAGAAAATATGTCATT
TCCTATCACAAATtcgattttgaaaataaaagatttccagattttttctt
taaaaaaagtttcccAGTTACGTAACTCTGATTTCTattccaaatttttc
aaaaggtttttgAGTTACGTTACGTTAGTTATAGTAAGCTGATTGAACAG
GCGATTGCATGAGTGTTttagaggttttgtttttaaagaatgatatcgtt
tgcttactcatcaattttaattcacaagctttttcacattggattgacac
ggatgtggagcaagattgatcagaacgagaaaaagaaaaacatttttttg
cttattatcAGCATATTATAACattagcaagacactgtcctgatatgaaa
tatNCTTTTTTGCTTATTATCAGCAtattataacaatagcaagacactgt
cctgatatgaaatatgtgtctgatatgaaacggaaacacttatgtaaaaa
gaaaacctttaagattATGTCTACATTGCACTGGTATTGGAAAAAAGAAG
TTGGTGTcggaaaaaaaaagttgatatcgAAAAAAAGTTTGGCGCGCCAT
AAATTTGAGCCTGTTTAAAATTACAGTACCGTAGCAACNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
aaacaaaccccccccccccccccgccaatatgaaaatgcttcctacggca
ctgaattAGAAGATAAGGAGGGGAAAAGACAAAccttttcctttattttt
taattaaagtaAAGGGTGTCTGGTTAATTAAAAAACTTTAACTTTTTTAG
AAAGCATTATGGAGTGATATGTATACTGGAAGGCTTCGTTCTGAAATTCC
CAAGTCTTTGGTGAGTATCACctaggtttttttattttaatagaagTTGC
TCACTCTGTCAAGATCAAAAGGCTACAATATGCTTCTTAAATCTTTAAAT
CTATACCTGATATGGCTGTCTGTAtgtctgggggtgttttttgatttttg
aagcctggGCATagtttttctccaaaatgaGGCTAAGACTTTGGGGCAAG
CCTGAAACTTggttgttccttgggtgaatatctgggagtgttttttcatt
tttcaaatgattTCATTTTGCAGAGCCTGGGCACTAATCTTTTGGTTTAT
TTTGCTACAGTTGGACCAATGAATAATTTGGAGCTACTGAAGTTTAGCCC
ATTATGTTGCGCAGGTTCGATCTCGATATGTAAATTACAGAAAAGATTTA
ACACATTTGCAGAATACTGTAATTGGGTTTTCCCTTTGCTCACAGTTGCT
CAcaaattttaattgaaattaCCAGTCAAGTTATATTTTCAACAATAGGA
ATTGCTTAGTGAGGGCATTATAACAGCTGGTGCTAAACTGACAGTCTTGG
ATTTGAGTGACAATGCATTTGGTCCAGATGGAGTGGACGGAATCAAGAAG
CTTTTACGCAGCGAATCATCTTATTTATTACACACTTTAAAACTGAATAA
CAATGGTTTGGGAATTGGGGGTGGAAAGGTAAAAAAACTAATCCATCAAA
TTTTTGTATGACATAACCTAATTTTTACAACCCAACTTTTACGactttct
tttatcattttattatcTGGCatccgatgtagaaattttcttccgacacg
ctaaagctctaaaggtcgggaaaattttcaacatctggaagaaatacatt
acgNtaccatcggagagaaatagtagtCATCCATTGATGTGCCGACATAA
GTTTAGCCCTCATTTTCGGGGCCGTGCTGAACGCTCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00041391-exon-sc0002843-1491911889:3981..4511 | TCONS_00041391-exon-sc0002843-1491911889:3981..4511 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1510915933:3981..4511 | TCONS_00041391-exon-sc0002843-1510915933:3981..4511 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1575043694:3981..4511 | TCONS_00041391-exon-sc0002843-1575043694:3981..4511 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1491911889:6282..6399 | TCONS_00041391-exon-sc0002843-1491911889:6282..6399 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1510915933:6282..6399 | TCONS_00041391-exon-sc0002843-1510915933:6282..6399 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1575043694:6282..6399 | TCONS_00041391-exon-sc0002843-1575043694:6282..6399 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1491911889:9339..9466 | TCONS_00041391-exon-sc0002843-1491911889:9339..9466 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1510915933:9339..9466 | TCONS_00041391-exon-sc0002843-1510915933:9339..9466 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1575043694:9339..9466 | TCONS_00041391-exon-sc0002843-1575043694:9339..9466 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1491911889:11031..11090 | TCONS_00041391-exon-sc0002843-1491911889:11031..11090 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1510915933:11031..11090 | TCONS_00041391-exon-sc0002843-1510915933:11031..11090 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1575043694:11031..11090 | TCONS_00041391-exon-sc0002843-1575043694:11031..11090 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1491911889:11579..12021 | TCONS_00041391-exon-sc0002843-1491911889:11579..12021 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1510915933:11579..12021 | TCONS_00041391-exon-sc0002843-1510915933:11579..12021 | Clytia hemisphaerica | exon |
| TCONS_00041391-exon-sc0002843-1575043694:11579..12021 | TCONS_00041391-exon-sc0002843-1575043694:11579..12021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0002843 | supercontig | sc0002843:3981..12021 + |
Blast
BLAST of TCONS_00041391 vs. Swiss-Prot (Human)
Match: RAGP1 (Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.265e-35 Identity = 65/124 (52.42%), Postives = 94/124 (75.81%), Query Frame = 1
Query: 601 EVSFLGKELKLDNEEDGEEIANAIKNCRDMETLKLQGNTLGVGASKVISEALKQQSAFKKALWSDMYTGRLRSEIPKSLELLSEGIITAGAKLTVLDLSDNAFGPDGVDGIKKLLRSESSYLLH 972
++SF GK LKL+ ED +++ I++ +E L+L+GNT+GV A++VI++AL+++S K+ WSDM+TGRLR+EIP +L L EG+ITAGA+L LDLSDNAFGPDGV G + LL+S + + L
Sbjct: 22 QLSFKGKSLKLNTAEDAKDVIKEIEDFDSLEALRLEGNTVGVEAARVIAKALEKKSELKRCHWSDMFTGRLRTEIPPALISLGEGLITAGAQLVELDLSDNAFGPDGVQGFEALLKSSACFTLQ 145
The following BLAST results are available for this feature:
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