TCONS_00041384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041384
Unique NameTCONS_00041384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041384 ID=TCONS_00041384|Name=TCONS_00041384|organism=Clytia hemisphaerica|type=transcript|length=1367bp
CACTGGTCCGTCACTCTTGGTTGGAAGGAGTTACAAATGTCCATTACACT
CAAAGTTGATAAGAACTACAGATGCTAAGATATTTGCCAGTACACAAAGA
TATTCACAGGATGTTTTATTTTGTCACAAAATGGCattcaaaaatgaatt
tctgATGAGCTTGTTTCGAAGTATTTCATCTGGACTCTCTTTTGAGAAAG
TCAGAGAGACACTGACAGCAAGAACTCTGACCAATTTTCATATTGCTAAA
AATAAATATCTCTATGATTGTGGTAAATTAAAGCTTTCTCCTGATTTAAA
TGCAATGGAAGAGATTAAGAAGCTACTCCTAAAAATGGTACCAAGCACAG
ATTCTCTAGAAGATCTCTTCAAATCTTGGTTTGAGCAAAATGAATCCTTC
TTTGTAGAAGACATGTCATCTTTGAAAGAATCGTTATTATCTGTTGATCA
TACCTTCAAAGTGGCTACAAACATTGGGGGATTTCAAACACATGGAGAGG
AAAGAGTTTGGGTACAGCTTTACAATTCACTCTTTATtgttatgaatgaa
agaaaagaaatagtATCTTGGCATtttactaaaaaagaaaaatttcagtt
TGTCCAAGATCTTTTGTCAAATATTGGAGACAGGTGTAAAGATGACTTGC
AGTATTTTATTTCTGATACGTGTTGCAAGTGGaaactcaaaatatttgaa
ttgtTTGGAGAGCATATTCTGATCAAGTTGGATCCATTCCATGCCATCCA
ACGCATTATCCTGACCATTCCAAAAAAGCATCTTTTCCACCAGCAGCTAT
GCGATGATCTGAGAAAACTTTTCCGGAAGCCTGGTGATTTTGGCGAATCA
AGGAAAGAAGAAACAGCAGACCCTCAAACGATCCTTTCCAGACTCGATGG
GATCGTAAAGAAATGGGAAGCAATGGAGCAGCAGCAAGGCTCTGAACAAA
TCATTATCCGAAAGGAGACCCATGATGCCATCAGCAATTTGCGAAAGCAC
ATCATTGCAGGATGCTGTTCAGGAATTCCACCAAATTGTTTATCAGGGAC
AAACGAGAATCTTCACAGgtcTTTAAACAAGTTTCTGAAAGGCAGAGTGA
TGGGTCCAGAATTGACATATGCTTTATTCTCTGTGATTTTCTTCAAATGg
aatcaaaaaatcaaagcaGCCAAGTATCGATACGAATTGGTGAACAGCGA
AATATTTGGTATGGGTGGATCCTCAATGCAAGCCATTGAATCCAATCTGG
ATAACTTTCTTGGAAAATGGTGCACCAAGAAGCTAGCTGCAGTGAACCAT
CCAATTTTGACACAGCTGACTACCCTTCAGAAGATCTCTTCCTTTATTGA
GGTTAGCAATATTGCAG
Run BLAST on NCBI

protein sequence of TCONS_00041384-protein

>TCONS_00041384-protein ID=TCONS_00041384-protein|Name=TCONS_00041384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
TGPSLLVGRSYKCPLHSKLIRTTDAKIFASTQRYSQDVLFCHKMAFKNEF
LMSLFRSISSGLSFEKVRETLTARTLTNFHIAKNKYLYDCGKLKLSPDLN
AMEEIKKLLLKMVPSTDSLEDLFKSWFEQNESFFVEDMSSLKESLLSVDH
TFKVATNIGGFQTHGEERVWVQLYNSLFIVMNERKEIVSWHFTKKEKFQF
VQDLLSNIGDRCKDDLQYFISDTCCKWKLKIFELFGEHILIKLDPFHAIQ
RIILTIPKKHLFHQQLCDDLRKLFRKPGDFGESRKEETADPQTILSRLDG
IVKKWEAMEQQQGSEQIIIRKETHDAISNLRKHIIAGCCSGIPPNCLSGT
NENLHRSLNKFLKGRVMGPELTYALFSVIFFKWNQKIKAAKYRYELVNSE
IFGMGGSSMQAIESNLDNFLGKWCTKKLAAVNHPILTQLTTLQKISSFIE
VSNIA
Run BLAST on NCBI

transcript from alignment at sc0002840:9557..11518-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041384 ID=TCONS_00041384|Name=TCONS_00041384|organism=Clytia hemisphaerica|type=transcript|length=1962bp|location=Sequence derived from alignment at sc0002840:9557..11518- (Clytia hemisphaerica)
CACTGGTCCGTCACTCTTGGTTGGAAGGAGTTACAAATGTCCATTACACT
CAAAGTTGATAAGAACTACAGATGCTAAGATATTTGCCAGTACACAAAGA
TATTCACAGGATGTTTTATTTTGTCACAAAATGGCATTCAAAAATGAATT
TCTGATGAGCTTGTTTCGAAGTATTTCATCTGGACTCTCTTTTGAGAAAG
TCAGAGAGACACTGACAGCAAGAACTCTGACCAATTTTCATATTGCTAAA
AATAAATATCTCTATGATTGTGGTAAATTAAAGCTTTCTCCTGATTTAAA
TGCAATGGAAGAGATTAAGAAGCTACTCCTAAAAATGGTACCAAGCACAG
ATTCTCTAGAAGATCTCTTCAAATCTTGGTTTGAGCAAAATGAATCCTTC
TTTGTAGAAGACATGTCATCTTTGAAAGAATCGTTATTATCTGTTGATCA
TACCTTCAAAGTAAGTATTATTCCAGAAAAAGCTTTTGCAGAAACTAGGT
TTTTGATTTTTGTCTAGTCATGTCAACAATTGTTTACGAATTAAGAATGA
ATAAAACAATAAGCAGAAAGGTAGTGACACCTTTTTTGACAATTGACAAA
AAGGTTTTTCTTATTTGATATTTTCCTGTGTAGATTTAGAAAAGGAAAAA
AGACGATCATGATATGATCAAATTAAAATTTTTAAAGCTTATTTCAAATT
GGTTTTAATTTTACCAACCAAAGATAGTAGGCATTTGTCACATGCTAGTA
TTTTTTGCTTGATCTTGTCATTTCTTTAATCTCTAAGGTGGCTACAAACA
TTGGGGGATTTCAAACACATGGAGAGGAAAGAGTTTGGGTACAGCTTTAC
AATTCACTCTTTATTGTTATGAATGAAAGAAAAGAAATAGTATCTTGGCA
TTTTACTAAAAAAGAAAAATTTCAGTTTGTCCAAGATCTTTTGTCAAATA
TTGGAGACAGGTGTAAAGATGACTTGCAGTATTTTATTTCTGATACGTGT
TGCAAGTGGAAACTCAAAATATTTGAATTGTTTGGAGAGCATATTCTGAT
CAAGTTGGATCCATTCCATGCCATCCAACGCATTATCCTGACCATTCCAA
AAAAGCATCTTTTCCACCAGCAGCTATGCGATGATCTGAGAAAACTTTTC
CGGAAGCCTGGTGATTTTGGCGAATCAAGGAAAGAAGAAACAGCAGACCC
TCAAACGATCCTTTCCAGACTCGATGGGATCGTAAAGAAATGGGAAGCAA
TGGAGCAGCAGCAAGGCTCTGAACAAATCATTATCCGAAAGGAGACCCAT
GATGCCATCAGCAATTTGCGAAAGCACATCATTGCAGGATGCTGTTCAGG
AATTCCACCAAATTGTTTATCAGGGACAAACGAGAATCTTCACAGGTAGA
ACTTATAATGATTCATTGCAGAGGTGTTGATAAGCCTCACTAAATGATAG
TACTTGATATAATATATCATATATATCTTTTCTTTTTGGGAAAAAAGTCT
TAAGGGTCATTAAAATGGATCAAAGGATCAATTTTCAAACTTTGGTTTAC
CATACTTATCATACTGCAGAATTTATGGCAACCTCATTCCTCTGGATTTT
CTTGTGTGAAGCAGTCTATTGTAGATTTTTATTTTCAATTGATACTGAAT
TTAATTTTTTTAGGTCTTTAAACAAGTTTCTGAAAGGCAGAGTGATGGGT
CCAGAATTGACATATGCTTTATTCTCTGTGATTTTCTTCAAATGGAATCA
AAAAATCAAAGCAGCCAAGTATCGATACGAATTGGTGAACAGCGAAATAT
TTGGTATGGGTGGATCCTCAATGCAAGCCATTGAATCCAATCTGGATAAC
TTTCTTGGAAAATGGTGCACCAAGAAGCTAGCTGCAGTGAACCATCCAAT
TTTGACACAGCTGACTACCCTTCAGAAGATCTCTTCCTTTATTGAGGTTA
GCAATATTGCAG

Coding sequence (CDS) from alignment at sc0002840:9557..11518-

>TCONS_00041384 ID=TCONS_00041384|Name=TCONS_00041384|organism=Clytia hemisphaerica|type=CDS|length=4095bp|location=Sequence derived from alignment at sc0002840:9557..11518- (Clytia hemisphaerica)
GTCTTTAAACAAGTTTCTGAAAGGCAGAGTGATGGGTCCAGAATTGACAT
ATGCTTTATTCTCTGTGATTTTCTTCAAATGGAATCAAAAAATCAAAGCA
GCCAAGTATCGATACGAATTGGTGAACAGCGAAATATTTGGTATGGGTGG
ATCCTCAATGCAAGCCATTGAATCCAATCTGGATAACTTTCTTGGAAAAT
GGTGCACCAAGAAGCTAGCTGCAGTGAACCATCCAATTTTGACACAGCTG
ACTACCCTTCAGAAGATCTCTTCCTTTATTGAGGTTAGCAATATTGCAGT
GGCTACAAACATTGGGGGATTTCAAACACATGGAGAGGAAAGAGTTTGGG
TACAGCTTTACAATTCACTCTTTATTGTTATGAATGAAAGAAAAGAAATA
GTATCTTGGCATTTTACTAAAAAAGAAAAATTTCAGTTTGTCCAAGATCT
TTTGTCAAATATTGGAGACAGGTGTAAAGATGACTTGCAGTATTTTATTT
CTGATACGTGTTGCAAGTGGAAACTCAAAATATTTGAATTGTTTGGAGAG
CATATTCTGATCAAGTTGGATCCATTCCATGCCATCCAACGCATTATCCT
GACCATTCCAAAAAAGCATCTTTTCCACCAGCAGCTATGCGATGATCTGA
GAAAACTTTTCCGGAAGCCTGGTGATTTTGGCGAATCAAGGAAAGAAGAA
ACAGCAGACCCTCAAACGATCCTTTCCAGACTCGATGGGATCGTAAAGAA
ATGGGAAGCAATGGAGCAGCAGCAAGGCTCTGAACAAATCATTATCCGAA
AGGAGACCCATGATGCCATCAGCAATTTGCGAAAGCACATCATTGCAGGA
TGCTGTTCAGGAATTCCACCAAATTGTTTATCAGGGACAAACGAGAATCT
TCACAGACTGGTCCGTCACTCTTGGTTGGAAGGAGTTACAAATGTCCATT
ACACTCAAAGTTGATAAGAACTACAGATGCTAAGATATTTGCCAGTACAC
AAAGATATTCACAGGATGTTTTATTTTGTCACAAAATGGCATTCAAAAAT
GAATTTCTGATGAGCTTGTTTCGAAGTATTTCATCTGGACTCTCTTTTGA
GAAAGTCAGAGAGACACTGACAGCAAGAACTCTGACCAATTTTCATATTG
CTAAAAATAAATATCTCTATGATTGTGGTAAATTAAAGCTTTCTCCTGAT
TTAAATGCAATGGAAGAGATTAAGAAGCTACTCCTAAAAATGGTACCAAG
CACAGATTCTCTAGAAGATCTCTTCAAATCTTGGTTTGAGCAAAATGAAT
CCTTCTTTGTAGAAGACATGTCATCTTTGAAAGAATCGTTATTATCTGTT
GATCATACCTTCAAAGTCTTTAAACAAGTTTCTGAAAGGCAGAGTGATGG
GTCCAGAATTGACATATGCTTTATTCTCTGTGATTTTCTTCAAATGGAAT
CAAAAAATCAAAGCAGCCAAGTATCGATACGAATTGGTGAACAGCGAAAT
ATTTGGTATGGGTGGATCCTCAATGCAAGCCATTGAATCCAATCTGGATA
ACTTTCTTGGAAAATGGTGCACCAAGAAGCTAGCTGCAGTGAACCATCCA
ATTTTGACACAGCTGACTACCCTTCAGAAGATCTCTTCCTTTATTGAGGT
TAGCAATATTGCAGTGGCTACAAACATTGGGGGATTTCAAACACATGGAG
AGGAAAGAGTTTGGGTACAGCTTTACAATTCACTCTTTATTGTTATGAAT
GAAAGAAAAGAAATAGTATCTTGGCATTTTACTAAAAAAGAAAAATTTCA
GTTTGTCCAAGATCTTTTGTCAAATATTGGAGACAGGTGTAAAGATGACT
TGCAGTATTTTATTTCTGATACGTGTTGCAAGTGGAAACTCAAAATATTT
GAATTGTTTGGAGAGCATATTCTGATCAAGTTGGATCCATTCCATGCCAT
CCAACGCATTATCCTGACCATTCCAAAAAAGCATCTTTTCCACCAGCAGC
TATGCGATGATCTGAGAAAACTTTTCCGGAAGCCTGGTGATTTTGGCGAA
TCAAGGAAAGAAGAAACAGCAGACCCTCAAACGATCCTTTCCAGACTCGA
TGGGATCGTAAAGAAATGGGAAGCAATGGAGCAGCAGCAAGGCTCTGAAC
AAATCATTATCCGAAAGGAGACCCATGATGCCATCAGCAATTTGCGAAAG
CACATCATTGCAGGATGCTGTTCAGGAATTCCACCAAATTGTTTATCAGG
GACAAACGAGAATCTTCACAGACTGGTCCGTCACTCTTGGTTGGAAGGAG
TTACAAATGTCCATTACACTCAAAGTTGATAAGAACTACAGATGCTAAGA
TATTTGCCAGTACACAAAGATATTCACAGGATGTTTTATTTTGTCACAAA
ATGGCATTCAAAAATGAATTTCTGATGAGCTTGTTTCGAAGTATTTCATC
TGGACTCTCTTTTGAGAAAGTCAGAGAGACACTGACAGCAAGAACTCTGA
CCAATTTTCATATTGCTAAAAATAAATATCTCTATGATTGTGGTAAATTA
AAGCTTTCTCCTGATTTAAATGCAATGGAAGAGATTAAGAAGCTACTCCT
AAAAATGGTACCAAGCACAGATTCTCTAGAAGATCTCTTCAAATCTTGGT
TTGAGCAAAATGAATCCTTCTTTGTAGAAGACATGTCATCTTTGAAAGAA
TCGTTATTATCTGTTGATCATACCTTCAAAGTCTTTAAACAAGTTTCTGA
AAGGCAGAGTGATGGGTCCAGAATTGACATATGCTTTATTCTCTGTGATT
TTCTTCAAATGGAATCAAAAAATCAAAGCAGCCAAGTATCGATACGAATT
GGTGAACAGCGAAATATTTGGTATGGGTGGATCCTCAATGCAAGCCATTG
AATCCAATCTGGATAACTTTCTTGGAAAATGGTGCACCAAGAAGCTAGCT
GCAGTGAACCATCCAATTTTGACACAGCTGACTACCCTTCAGAAGATCTC
TTCCTTTATTGAGGTTAGCAATATTGCAGTGGCTACAAACATTGGGGGAT
TTCAAACACATGGAGAGGAAAGAGTTTGGGTACAGCTTTACAATTCACTC
TTTATTGTTATGAATGAAAGAAAAGAAATAGTATCTTGGCATTTTACTAA
AAAAGAAAAATTTCAGTTTGTCCAAGATCTTTTGTCAAATATTGGAGACA
GGTGTAAAGATGACTTGCAGTATTTTATTTCTGATACGTGTTGCAAGTGG
AAACTCAAAATATTTGAATTGTTTGGAGAGCATATTCTGATCAAGTTGGA
TCCATTCCATGCCATCCAACGCATTATCCTGACCATTCCAAAAAAGCATC
TTTTCCACCAGCAGCTATGCGATGATCTGAGAAAACTTTTCCGGAAGCCT
GGTGATTTTGGCGAATCAAGGAAAGAAGAAACAGCAGACCCTCAAACGAT
CCTTTCCAGACTCGATGGGATCGTAAAGAAATGGGAAGCAATGGAGCAGC
AGCAAGGCTCTGAACAAATCATTATCCGAAAGGAGACCCATGATGCCATC
AGCAATTTGCGAAAGCACATCATTGCAGGATGCTGTTCAGGAATTCCACC
AAATTGTTTATCAGGGACAAACGAGAATCTTCACAGACTGGTCCGTCACT
CTTGGTTGGAAGGAGTTACAAATGTCCATTACACTCAAAGTTGATAAGAA
CTACAGATGCTAAGATATTTGCCAGTACACAAAGATATTCACAGGATGTT
TTATTTTGTCACAAAATGGCATTCAAAAATGAATTTCTGATGAGCTTGTT
TCGAAGTATTTCATCTGGACTCTCTTTTGAGAAAGTCAGAGAGACACTGA
CAGCAAGAACTCTGACCAATTTTCATATTGCTAAAAATAAATATCTCTAT
GATTGTGGTAAATTAAAGCTTTCTCCTGATTTAAATGCAATGGAAGAGAT
TAAGAAGCTACTCCTAAAAATGGTACCAAGCACAGATTCTCTAGAAGATC
TCTTCAAATCTTGGTTTGAGCAAAATGAATCCTTCTTTGTAGAAGACATG
TCATCTTTGAAAGAATCGTTATTATCTGTTGATCATACCTTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025361XLOC_025361Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041384-proteinTCONS_00041384-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041384-exon-sc0002840-1575043694:11059..11518TCONS_00041384-exon-sc0002840-1575043694:11059..11518Clytia hemisphaericaexon
TCONS_00041384-exon-sc0002840-1575043694:10124..10731TCONS_00041384-exon-sc0002840-1575043694:10124..10731Clytia hemisphaericaexon
TCONS_00041384-exon-sc0002840-1575043694:9557..9855TCONS_00041384-exon-sc0002840-1575043694:9557..9855Clytia hemisphaericaexon
TCONS_00041384-exon-sc0002840-1510915933:11059..11518TCONS_00041384-exon-sc0002840-1510915933:11059..11518Clytia hemisphaericaexon
TCONS_00041384-exon-sc0002840-1510915933:10124..10731TCONS_00041384-exon-sc0002840-1510915933:10124..10731Clytia hemisphaericaexon
TCONS_00041384-exon-sc0002840-1510915933:9557..9855TCONS_00041384-exon-sc0002840-1510915933:9557..9855Clytia hemisphaericaexon
TCONS_00041384-exon-sc0002840-1491911889:11059..11518TCONS_00041384-exon-sc0002840-1491911889:11059..11518Clytia hemisphaericaexon
TCONS_00041384-exon-sc0002840-1491911889:10124..10731TCONS_00041384-exon-sc0002840-1491911889:10124..10731Clytia hemisphaericaexon
TCONS_00041384-exon-sc0002840-1491911889:9557..9855TCONS_00041384-exon-sc0002840-1491911889:9557..9855Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002840supercontigsc0002840:9557..11518 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0612742	0.0896279	0.0346889	0.0678753	0.123947	0.0652966	0.236333	0.405629	0.206538	0.0319789	0.0620789	0.122425	0.631649	0.97338	0.608886	0.466734	0.27599	0.471468	0.683926	0.477119	0.503568	0.476798	0.175639	0.095809	0	0	0.168038	0.0448337	0	0.069291
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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