TCONS_00041381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041381
Unique NameTCONS_00041381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041381 ID=TCONS_00041381|Name=TCONS_00041381|organism=Clytia hemisphaerica|type=transcript|length=420bp
atttaaaaatttggttgcgagcgaagcgagcagaaatttttgagaatttc
aaatgCCAGGATGAAAGTTTCCCATTTCCGGAAAGTTTACTAGACTTTAT
CTAgcccccaggtccatctgaaaaaaaattaggtgacccctaacatggtt
agtcccccctagAAACAGGCTAAAGTTAGGTACCAATTGCTGCTCGACCT
TCTAGCCCCCCTCAGGCCAGGAgggggggttccagccatgtggaagtaaa
aaatattaacaacaaaCCTGTTAGTCTTTGTGGTGATTATTTCTGAAGTC
AAAGTATGTTAAACATATGAAGCATGGCTCTNTGTGGTGATTATTTCTGA
AGTCAAAGTATGTTAAACATATGAAGCATGgctcttaaaatttaaatact
tgttgcaaataaattgcaaa
Run BLAST on NCBI

transcript from alignment at sc0002836:1526..1945

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041381 ID=TCONS_00041381|Name=TCONS_00041381|organism=Clytia hemisphaerica|type=transcript|length=420bp|location=Sequence derived from alignment at sc0002836:1526..1945 (Clytia hemisphaerica)
tttgcaatttatttgcaacaagtatttaaattttaagagcCATGCTTCAT
ATGTTTAACATACTTTGACTTCAGAAATAATCACCACANAGAGCCATGCT
TCATATGTTTAACATACTTTGACTTCAGAAATAATCACCACAAAGACTAA
CAGGtttgttgttaatattttttacttccacatggctggaacccccccTC
CTGGCCTGAGGGGGGCTAGAAGGTCGAGCAGCAATTGGTACCTAACTTTA
GCCTGTTTctaggggggactaaccatgttaggggtcacctaatttttttt
cagatggacctgggggcTAGATAAAGTCTAGTAAACTTTCCGGAAATGGG
AAACTTTCATCCTGGcatttgaaattctcaaaaatttctgctcgcttcgc
tcgcaaccaaatttttaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025358XLOC_025358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041381-exon-sc0002836-1491911889:1526..1945TCONS_00041381-exon-sc0002836-1491911889:1526..1945Clytia hemisphaericaexon
TCONS_00041381-exon-sc0002836-1510915933:1526..1945TCONS_00041381-exon-sc0002836-1510915933:1526..1945Clytia hemisphaericaexon
TCONS_00041381-exon-sc0002836-1575043694:1526..1945TCONS_00041381-exon-sc0002836-1575043694:1526..1945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002836supercontigsc0002836:1526..1945 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.383798	0	1.03691	1.77717	0.822235	2.20659	1.78894	4.14655	2.9297	2.31144	2.21454	4.15753	2.85716	3.75807	0.206089	0.243137	1.26223	0.153835	0.178738	0	0.487705	0	0.578361	0.224254	1.26368	3.55592	0.758281	1.47632	1.062	1.27986
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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