TCONS_00041378 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00041378
Unique Name	TCONS_00041378
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1510

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002835:12..5480+

transcript sequence

>TCONS_00041378 ID=TCONS_00041378|Name=TCONS_00041378|organism=Clytia hemisphaerica|type=transcript|length=1510bp
AAATCAAAAGTGCAACCAAGATGCACTACTATATTGTACGCCTAAACAAC
ACCCGATGATTTTCTCGAACATTAAAACCATTCCATTggtaaataaattc
aaaaatgatcgggtttggctgaaatttggcacacttgttccttgggtgaa
tatctgggggtgctttttcattttttgaaaattttcatttttaagggcgt
agtcacgacgagttttcgccaaaacgaggctaaaactttgaggcaggctg
gagacttcaaaaatggtcagattttgccaaaatttggcacacttgatcct
tgggcgaATCCCTTTGGGTGgtttttcattcttttaaaatttccatttta
agggcgtggtcatgagtttttagttgaaattggttacaattttacaattg
ggcctacgaatgatttaaaaacactgaggttgagcccagtgcggttagca
cgttcgacagtttaAAATTGGTCCTGGATTCTTTAGACAGGGAACATCTA
AGGTTTgctggaaaaaaattataatttttccaaatttattgCTCGTGGGT
TTTCGGAACAGATGTTTTATACTCCTTCCTagattttttgaagtgcttgg
gAAATAGCTGGCTCCTGGATTTTACTCCGAAATTCCCTCTCCTGGGAAAA
AAAgagtattttgaaaaattccgccGCTGGTTGCTACTATTAAATAGTAG
GATATGACTGCGTACTTATTACTTATAACAACTACCCCCCCCGAAAAATG
TCATATCAGGCACATAACTGTATAGGTCGGTATGtataaaagaaagaatt
ttgGCGGGAAACTGCTCACTCTGAATCGCTTATTGAGTGTTTCGTTGGTT
ACTAATacaactttgtaattttttaatcgaattttttaaaaatcaaaaat
catgaGTGATAAAGTGCTTTGTTATAAGTTTCAAGGCGAAAACAACTACA
AGTCAGATTGGGCATCCTATTATCAAGGGGCTGTCGTCGGTGATATGATA
AAGGTGACTTGGAAGAGGAAGGAGATGGAGGTGGAAGTGGTGGTATTTGG
CACCGTACAGGAGATAACAGAATTCATCCAGAACGCAAAAGGGAAAACTA
AATCGAAAAAGTCTCAGTCCATGAAGACACCAGACGATCCCAAAAACGGC
GAAACGAGTCAAAGGGTTCAGAATCTTCCGAATGAAGAAATCGTCCTTCC
AACATTAggtaaaaaatattgttgatcaGTGTATATATCCTCCGAACCCC
CATAATAAAGAATGTTCATAGAGTCTGGCCACGGAATGATTTTTAAGCTT
TTGATTTATTATGTGACCCGctttaattttactttatacgctttttttta
aaagatctagtctgaatagacgatatcgcgtttagataaatgcaatgcat
tctggtttctcggggactctcaaaggaactATAATGTCGATTATATACTG
ATCtggaatagattataattcccttgagggtcccgagaaaccagaatgca
ttgcatttat

Run BLAST on NCBI

transcript from alignment at sc0002835:12..5480+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00041378 ID=TCONS_00041378|Name=TCONS_00041378|organism=Clytia hemisphaerica|type=transcript|length=5469bp|location=Sequence derived from alignment at sc0002835:12..5480+ (Clytia hemisphaerica)
AAATCAAAAGTGCAACCAAGATGCACTACTATATTGTACGCCTAAACAAC
ACCCGATGATTTTCTCGAACATTAAAACCATTCCATTggtaaataaattc
aaaaatgatcgggtttggctgaaatttggcacacttgttccttgggtgaa
tatctgggggtgctttttcattttttgaaaattttcatttttaagggcgt
agtcacgacgagttttcgccaaaacgaggctaaaactttgaggcaggctg
gagacttcaaaaatggtcagattttgccaaaatttggcacacttgatcct
tgggcgaATCCCTTTGGGTGgtttttcattcttttaaaatttccatttta
agggcgtggtcatgagtttttagttgaaattggttacaattttacaattg
ggcctacgaatgatttaaaaacactgaggttgagcccagtgcggttagca
cgttcgacagtttaAAATTGGTCCTGGATTCTTTAGACAGGGAACATCTA
AGGTTTgctggaaaaaaattataatttttccaaatttattgCTCGTGGGT
TTTCGGAACAGATGTTTTATACTCCTTCCTagattttttgaagtgcttgg
gAAATAGCTGGCTCCTGGATTTTACTCCGAAATTCCCTCTCCTGGGAAAA
AAAgagtattttgaaaaattccgccGCTGGTTGCTACTATTAAATAGTAG
GATATGACTGCGTACTTATTACTTATAACAACTACCCCCCCCGAAAAATG
TCATATCAGGCACATAACTGTATAGGTCGGTATGtataaaagaaagaatt
ttgGCGGGAAACTGCTCACTCTGAATCGCTTATTGAGTGTTTCGTTGGTT
ACTAATacaactttgtaattttttaatcgaattttttaaaaatcaaaaat
catgaGTGATAAAGTGCTTTGTTATAAGTTTCAAGGCGAAAACAACTACA
AGTCAGATTGGGCATCCTATTATCAAGGGGCTGTCGTCGGTGATATGATA
AAGGTGACTTGGAAGAGGAAGGAGATGGAGGTGGAAGTGGTGGTATTTGG
CACCGTACAGGAGATAACAGGTATTTTGTAATATATTGTGACTAGAGTAT
CAGGTCTTGTTTTTGAGAGCTCTGCTAAGATTTATATATTGTGAATGAAG
TTTCTTAAAATCCAGACATCAGGCTTTGTATAAAACAAATAAAGGCCACT
GTGTCGAAGGCTGAAGCATAATACTTGATTCGCAAAATTAAGACAAAGAA
GATTTCTTCTCCGTTTTCTTGCCTAGTGTTAagtagaaaatattttatgg
GTTTCATCAGTTCAGAATTAAAATAAGGGTTTCATTGTGagcttttaatt
ttcttttttaactttcgccgataaatatttgtgtttttattgaaacattc
AAATTCATtatgttcgaatttcaaaatgttcgaatttcaaaatgttcgaa
tttcaaaatgttcgaatttcaaaatgttcgaatttcaagattttcgaatT
TGTGAAAGATTCGAAAACTGTTTAGGCTTTATTTACACCGTATCAATAAT
TGTAgcgaaaattaaaaagataaaatgaaatgaattttacaataatacac
ctttcccgtaattcaaattttcatgattttcacgaattttggctcttttc
gcgaaagtaaatgtctttaaaaattcaggGTGATATAATATCATAAGTAG
AAAGAACATACTTAAATATGAGAGGATGAAATATTTGagcatttgaaatt
tgaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCAAATTCGGTCAAGTTCTCCATCGTAGACGCGAAAGT
GGTAACAAGTGATAGACCAacagagtgataaaaaaatcgcgtgttgggat
agagataggctaGGTTTCTCCGCGCCCCTTGATaattgaaataaacaaaa
caaagagtTTCCACTTTTCATAGAAACCGGGCTTTATAAAGCCCCGTGCA
CATCtgcaaaaaatatgtaaatagattatgtaatcttttctcgctattta
ttttgaataaacgaGAAAACAAAACGCACCGTCTGTAAAATGAATATTAA
GTCAGTAAATTGAATacgtttcaaaataaaaacagacaTTTTACTTTGTA
TGATAATTCAATGACTACTAACAATTATAGAATAATTTATATATTGTCGA
AACCGCAAAGCTCCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTCTACACGTtgggatattttattttt
gaaatttccataaaaaagatttaacctgtaacctgaaacctgaacctgta
acctgaaacctgaaacctgaacctgtgtttcgaactagccgtacTTTTCA
TCAACCCCGTAGGAAAGTATGCACTAGggggaaatttttaaaatcgctcg
atttttttagacaaagcattcttaattttttgagagctttccaaaaatat
acaacagggctctgttttctcaagctaaaattttcattaatttttcaccc
tatgatttttgcctgagaccgtcgtatttgtccgaaaatcacaccaaagt
gtccaaaaaaaaattggcacccaagttattttgattcccttaccccttag
ctttccaaaaatgtataacaagtgctttgactaaaaaaatcgagcaacct
caaaaaaacgaaaaaaatttctcccctACTATAATCTGTCTGGTTATTAA
AGTCAATATATCCAATTGTATTTTAGAATTCATCCAGAACGCAAAAGGGA
AAACTAAATCGAAAAAGTCTCAGTCCATGAAGACACCAGACGATCCCAAA
AACGGTATGTTATAAAGCTAAAATACTGTGAATTAAATGTCTTTGCGATC
CTATGTgatgaaataataaaatgaataacTTGGCTAATACTTCATATATT
GGCATATATTcatcggcatatgccgacaNcccgtggcaaataggtcgaac
cttaaaaaatacgaacggcagttaaagggttaatctAATACATCAGGTCC
AGATGAGGAAAACTTAATTCAATTAATTAATATACAAAAATATTCCTCAC
ACTTCAGGCGAAACGAGTCAAAGGGTTCAGAATCTTCCGAATGAAGAAAT
CGTCCTTCCAACATTAggtaaaaaatattgttgatcaGTGTATATATCCT
CCGAACCCCCATAATAAAGAATGTTCATAGAGTCTGGCCACGGAATGATT
TTTAAGCTTTTGATTTATTATGTGACCCGctttaattttactttatacgc
ttttttttaaaagatctagtctgaatagacgatatcgcgtttagataaat
gcaatgcattctggtttctcggggactctcaaaggaactATAATGTCGAT
TATATACTGATCtggaatagattataattcccttgagggtcccgagaaac
cagaatgcattgcatttat

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_025355	XLOC_025355	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00041378-exon-sc0002835-1491911889:12..1081	TCONS_00041378-exon-sc0002835-1491911889:12..1081	Clytia hemisphaerica	exon
TCONS_00041378-exon-sc0002835-1510915933:12..1081	TCONS_00041378-exon-sc0002835-1510915933:12..1081	Clytia hemisphaerica	exon
TCONS_00041378-exon-sc0002835-1575043694:12..1081	TCONS_00041378-exon-sc0002835-1575043694:12..1081	Clytia hemisphaerica	exon
TCONS_00041378-exon-sc0002835-1491911889:4788..4865	TCONS_00041378-exon-sc0002835-1491911889:4788..4865	Clytia hemisphaerica	exon
TCONS_00041378-exon-sc0002835-1510915933:4788..4865	TCONS_00041378-exon-sc0002835-1510915933:4788..4865	Clytia hemisphaerica	exon
TCONS_00041378-exon-sc0002835-1575043694:4788..4865	TCONS_00041378-exon-sc0002835-1575043694:4788..4865	Clytia hemisphaerica	exon
TCONS_00041378-exon-sc0002835-1491911889:5119..5480	TCONS_00041378-exon-sc0002835-1491911889:5119..5480	Clytia hemisphaerica	exon
TCONS_00041378-exon-sc0002835-1510915933:5119..5480	TCONS_00041378-exon-sc0002835-1510915933:5119..5480	Clytia hemisphaerica	exon
TCONS_00041378-exon-sc0002835-1575043694:5119..5480	TCONS_00041378-exon-sc0002835-1575043694:5119..5480	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002835	supercontig	sc0002835:12..5480 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.153103	0	0.191721	0.881132	0.691546	0.897406	0	0.873745	0	0	0.118293	0.259968	0.16853	0.468275	0.0918283	0.0677592	0	0.442729	0	0	1.34995	0.650273	0	0	0.435503	0.206281	0	0	0.495025	0.450555

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00041378 vs. Swiss-Prot (Human)

BLAST of TCONS_00041378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00041378 (transcript) - C. hemisphaerica