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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041371 ID=TCONS_00041371|Name=TCONS_00041371|organism=Clytia hemisphaerica|type=transcript|length=888bp ATCTTACGGGGGGATGACGGTAATGTCAAGATTACAGATTTTGGGCTAGC ATACAAAATAAAACACGGTGAAATGATTTCTGACTTCTGGGGGACACCCG TTTACAATGCACCAGAGGTTGAACGGGGCGATCCGAGGTTGTACTACCCG CCAACAGAGCTCTACGATCCTACCAAAAGCGACACATGGAGTTTGGGTGT AATTATGTATGAACTCCTAACAGGGGATCTACCCTTCGAAAGCTCCAAGG AAATTGTCAAGTGTGACCGACCACCCGCATTACCTAGCCACCTGAACGTT TCACTCTCGTGTCGAGATTTCTTGGAGTGCATGTTACAGCCAAATCCAAG GCTTCGTTCATCCCTCGACGAATTGTTAGGCCACCCATGGCTCACAAATC AGGGAACACAGTGCAGTCGTCCTaaaagaaaacatgataaaaagaAGAAA CGACGAGGTGGCAAACGCAAAAGACCCACGGTTTCAGAGCCAACAACAGA TAGCGTtgacagaaaaagaaaaaggactGAACAAACACTTTCAATGTCGA CAACTAACAACAGCGACATTGATTTAATTGTTCCGAATGCTAAAAAAGTC TGCCATTCACCTTCGTATGGTGGTGTGAGCAGCCAAACATCTTCGCCAAA CAAAAACTCGAATTTTACCGAGGTCTACAATACATGTGTCGAGAGCAACA ATAAAAGACCTCGATTCGCGGACTATATCAATTTAGTTTCCCCCGTTTCA AGCAATTCCGAACCCGACCCGGAAATGTTATTGTATCCCTATGATCCCAT ATTTTTCGTCCCAACTTTAAAAAACATGATCAATAATTCAATAAttcaat aaatcaataaatttaGAAATATATAACACTTAGTATAC Run BLAST on NCBI protein sequence of TCONS_00041371-protein >TCONS_00041371-protein ID=TCONS_00041371-protein|Name=TCONS_00041371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
ILRGDDGNVKITDFGLAYKIKHGEMISDFWGTPVYNAPEVERGDPRLYYP PTELYDPTKSDTWSLGVIMYELLTGDLPFESSKEIVKCDRPPALPSHLNV SLSCRDFLECMLQPNPRLRSSLDELLGHPWLTNQGTQCSRPKRKHDKKKK RRGGKRKRPTVSEPTTDSVDRKRKRTEQTLSMSTTNNSDIDLIVPNAKKV CHSPSYGGVSSQTSSPNKNSNFTEVYNTCVESNNKRPRFADYINLVSPVS SNSEPDPEMLLYPYDPIFFVPTLKNMINNSIIQ Run BLAST on NCBI transcript from alignment at sc0002832:9577..12542- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041371 ID=TCONS_00041371|Name=TCONS_00041371|organism=Clytia hemisphaerica|type=transcript|length=2966bp|location=Sequence derived from alignment at sc0002832:9577..12542- (Clytia hemisphaerica) ATCTTACGGGGGGATGACGGTAATGTCAAGATTACAGGTAAACAATTTTT
ATTAACAACATTATTAGAATACACGGGTTGCAAAATTATAGCAGTACAGT
CAAAACATGTGATTACTCGAAAAAATTTATGAGTACTTTTTTCGGGAGTA
ATTTTTCCTGTGGCACTGAGACATATTGAATTTTTCTGTTTCAGATTTTG
GGCTAGCATACAAAATAAAACACGGTGAAATGATTTCTGACTTCTGGGGG
ACACCCGTTTACAATGCACCAGAGGTTGAACGGGGCGATCCGAGGTTGTA
CTACCCGCCAACAGAGCTCTACGATCCTACCAAAAGCGACACATGGAGTT
TGTAAGTTTTTTCTTAAAATTTTTTCTCTTAAAAATCTCAAATTCTAGTT
ATCCACTGACAATAAATTTAGGAAGAGTCTCTATCGGAAAAATATGAACA
AAGCCACTTACTGTAGGCAAAAAAAAAGACTGTTTCAGTAATCCCTCTAA
CGCGATCATTTATTTACAGATTCTCGCAATAATTCAGCATGACCGCATTT
CCAGATTTTCATACTCACTAATAACCTCTTAGTTTACAAACGTGTGGTGT
TCTCATTTCCACTAAATTCCGGGGTTAGAAAACGCCGATAATTAAAGAAT
TGTTTAATTCATTACACACCTTTAGAGCATGCGGTGCTTACAGAATGGAG
AATCTTTTAAATGAAAGTTTGTAAACGTTGTACCAGCTACGTCTTTAACG
ATACGATTACAAACACGTGCTAAAACTAACTTATGAAAAATTGAAATGAC
ATTTTACACAAAGGTTTAATGTTTTTTTAAACCGNACTTATGAAAAATTG
AAATGACATTTTACACAAAGGTTTAATGTTTTTTTAAACCGTCATTTCCG
CACCAAGATTTTCGTCATTTTTCAAGAATTTTTCTTCTATTTCTCCCGGG
AGAACAAGCATGAGGTTGCAAACGGTTTGTTTCTAAAGGTATGGAATATA
TCGTCTTTGCTCACGAAACTAGGTAACATTTCTGAAGCTCATTTTTCAAA
TACCCGAAGTCCTGTCTTTTTTTCCGCTAGAAAAGTTGCAAAGGAATCTT
AGTGCAGAAATGGGAAACTTAATACAAAACGACGGAACAAGTCCATTTCA
CTGTTTTTTTAGGGGTGTAATTATGTATGAACTCCTAACAGGGGATCTAC
CCTTCGAAAGCTCCAAGGAAATTGTCAAGTGTGACCGACCACCCGCATTA
CCTAGCCACCTGAACGTTTCACTCTGTAAGTATTTCTGATATTTCTGTCT
GTTCACACGTTTTTTATAAGAACGTCAAAAACTTTTAAAGGCAAAAATTT
TAAAACTGAAAATGTTCTCATTTCTACCCCCTTTCGGGCATTTTTTGCCC
ATTTTTTTAAGAAACCCGGATGTTTAAAAGCCCGTAAAACCGTAAAATGT
TTTTAACTTCTTGATATTTTGGTCGTCGAAGCCTTACGTTCTTATATAGT
TTGTTCAATTAGTGATCGATTGGTATATAATATGTCTATGTTTAAAGTTA
AAAAAAAATTTTATCAAGCAAGAGGGCTAAAAAGGGTTGAAAATCTAAAA
TCCGCCATTATGGAAATTTGTGCCTGATCTAAATAACGCCACACACGTTT
TCTGACTCTTCAAGGACTATACTTTCATGATCAAAAGAAAAAATGACTAT
ACGCCGATGCACATATGGGACCTAACTCAGCCCCTAGAGTAATTGGCATG
TTTTCAAAATTTTCTTGAATCTACATCTTAACTTTCGTTTTCTTTAGCGT
GTCGAGATTTCTTGGAGTGCATGTTACAGCCAAATCCAAGGCTTCGTTCA
TCCCTCGACGAATTGTTAGGCCACCCATGGCTCACAAATCAGGTAATTCA
AATCGTATTTAAATCGTTCGATTTTTGAATGAAATACGTTATTTGAAACT
GAAGACATCTGCATCTTGTAAGAATGAAATTCATGAAAAAAGACTATTAA
TTAAGAAATGATATTATTTCTAGAATAGAGTCTACTTCTGGCTGCTGAAC
TGTGCTTTCTAATAATTTTTGATGACAAGTCCAGTGAAGTAGACTAGGAG
CATTTGACAAGTTTGCCATTTTGAAAAAAGATTTTTTAAATCCAAATAAC
AAAATACTTTAATGGGATAAATTTTCGCGGCGATTAATTTTCGCGGTTGA
GCTCATCCGCGAAATTTTAAGATTTTGCGGGGATTAATTTTCGCGGATGA
GGGATTTCCTGATTTTTCGCGGGGATTTAATTTGTGGACTCCGGGCTATA
TTATTTCTTGAAAATCCAGCCATCAAACTTTATACTTTTTGTGGGTCATT
CAGTACTAGACTACAAGACTAACCATTTTACATGTATAAAGTTTGCTACA
AAATTTTCCGAATAAGCGGAGAAAACATTTGACCCACTAACAACATTTTC
TAAATTCCAAAGTATTCTTAATTTTAATAGGGAACACAGTGCAGTCGTCC
TAAAAGAAAACATGATAAAAAGAAGAAACGACGAGGTGGCAAACGCAAAA
GACCCACGGTTTCAGAGCCAACAACAGATAGCGTTGACAGAAAAAGAAAA
AGGACTGAACAAACACTTTCAATGTCGACAACTAACAACAGCGACATTGA
TTTAATTGTTCCGAATGCTAAAAAAGTCTGCCATTCACCTTCGTATGGTG
GTGTGAGCAGCCAAACATCTTCGCCAAACAAAAACTCGAATTTTACCGAG
GTCTACAATACATGTGTCGAGAGCAACAATAAAAGACCTCGATTCGCGGA
CTATATCAATTTAGTTTCCCCCGTTTCAAGCAATTCCGAACCCGACCCGG
AAATGTTATTGTATCCCTATGATCCCATATTTTTCGTCCCAACTTTAAAA
AACATGATCAATAATTCAATAATTCAATAAATCAATAAATTTAGAAATAT
ATAACACTTAGTATAC Coding sequence (CDS) from alignment at sc0002832:9577..12542- >TCONS_00041371 ID=TCONS_00041371|Name=TCONS_00041371|organism=Clytia hemisphaerica|type=CDS|length=4260bp|location=Sequence derived from alignment at sc0002832:9577..12542- (Clytia hemisphaerica) GGAACACAGTGCAGTCGTCCTAAAAGAAAACATGATAAAAAGAAGAAACG ACGAGGTGGCAAACGCAAAAGACCCACGGTTTCAGAGCCAACAACAGATA GCGTTGACAGAAAAAGAAAAAGGACTGAACAAACACTTTCAATGTCGACA ACTAACAACAGCGACATTGATTTAATTGTTCCGAATGCTAAAAAAGTCTG CCATTCACCTTCGTATGGTGGTGTGAGCAGCCAAACATCTTCGCCAAACA AAAACTCGAATTTTACCGAGGTCTACAATACATGTGTCGAGAGCAACAAT AAAAGACCTCGATTCGCGGACTATATCAATTTAGTTTCCCCCGTTTCAAG CAATTCCGAACCCGACCCGGAAATGTTATTGTATCCCTATGATCCCATAT TTTTCGTCCCAACTTTAAAAAACATGATCAATAATTCAATAATTCAATAA CGTGTCGAGATTTCTTGGAGTGCATGTTACAGCCAAATCCAAGGCTTCGT TCATCCCTCGACGAATTGTTAGGCCACCCATGGCTCACAAATCAGGGGTG TAATTATGTATGAACTCCTAACAGGGGATCTACCCTTCGAAAGCTCCAAG GAAATTGTCAAGTGTGACCGACCACCCGCATTACCTAGCCACCTGAACGT TTCACTCTATTTTGGGCTAGCATACAAAATAAAACACGGTGAAATGATTT CTGACTTCTGGGGGACACCCGTTTACAATGCACCAGAGGTTGAACGGGGC GATCCGAGGTTGTACTACCCGCCAACAGAGCTCTACGATCCTACCAAAAG CGACACATGGAGTTTATCTTACGGGGGGATGACGGTAATGTCAAGATTAC AGGGAACACAGTGCAGTCGTCCTAAAAGAAAACATGATAAAAAGAAGAAA CGACGAGGTGGCAAACGCAAAAGACCCACGGTTTCAGAGCCAACAACAGA TAGCGTTGACAGAAAAAGAAAAAGGACTGAACAAACACTTTCAATGTCGA CAACTAACAACAGCGACATTGATTTAATTGTTCCGAATGCTAAAAAAGTC TGCCATTCACCTTCGTATGGTGGTGTGAGCAGCCAAACATCTTCGCCAAA CAAAAACTCGAATTTTACCGAGGTCTACAATACATGTGTCGAGAGCAACA ATAAAAGACCTCGATTCGCGGACTATATCAATTTAGTTTCCCCCGTTTCA AGCAATTCCGAACCCGACCCGGAAATGTTATTGTATCCCTATGATCCCAT ATTTTTCGTCCCAACTTTAAAAAACATGATCAATAATTCAATAATTCAAT AACGTGTCGAGATTTCTTGGAGTGCATGTTACAGCCAAATCCAAGGCTTC GTTCATCCCTCGACGAATTGTTAGGCCACCCATGGCTCACAAATCAGGGG TGTAATTATGTATGAACTCCTAACAGGGGATCTACCCTTCGAAAGCTCCA AGGAAATTGTCAAGTGTGACCGACCACCCGCATTACCTAGCCACCTGAAC GTTTCACTCTATTTTGGGCTAGCATACAAAATAAAACACGGTGAAATGAT TTCTGACTTCTGGGGGACACCCGTTTACAATGCACCAGAGGTTGAACGGG GCGATCCGAGGTTGTACTACCCGCCAACAGAGCTCTACGATCCTACCAAA AGCGACACATGGAGTTTATCTTACGGGGGGATGACGGTAATGTCAAGATT ACAGGGAACACAGTGCAGTCGTCCTAAAAGAAAACATGATAAAAAGAAGA AACGACGAGGTGGCAAACGCAAAAGACCCACGGTTTCAGAGCCAACAACA GATAGCGTTGACAGAAAAAGAAAAAGGACTGAACAAACACTTTCAATGTC GACAACTAACAACAGCGACATTGATTTAATTGTTCCGAATGCTAAAAAAG TCTGCCATTCACCTTCGTATGGTGGTGTGAGCAGCCAAACATCTTCGCCA AACAAAAACTCGAATTTTACCGAGGTCTACAATACATGTGTCGAGAGCAA CAATAAAAGACCTCGATTCGCGGACTATATCAATTTAGTTTCCCCCGTTT CAAGCAATTCCGAACCCGACCCGGAAATGTTATTGTATCCCTATGATCCC ATATTTTTCGTCCCAACTTTAAAAAACATGATCAATAATTCAATAATTCA ATAACGTGTCGAGATTTCTTGGAGTGCATGTTACAGCCAAATCCAAGGCT TCGTTCATCCCTCGACGAATTGTTAGGCCACCCATGGCTCACAAATCAGG GGTGTAATTATGTATGAACTCCTAACAGGGGATCTACCCTTCGAAAGCTC CAAGGAAATTGTCAAGTGTGACCGACCACCCGCATTACCTAGCCACCTGA ACGTTTCACTCTATTTTGGGCTAGCATACAAAATAAAACACGGTGAAATG ATTTCTGACTTCTGGGGGACACCCGTTTACAATGCACCAGAGGTTGAACG GGGCGATCCGAGGTTGTACTACCCGCCAACAGAGCTCTACGATCCTACCA AAAGCGACACATGGAGTTTATCTTACGGGGGGATGACGGTAATGTCAAGA TTACAGGGAACACAGTGCAGTCGTCCTAAAAGAAAACATGATAAAAAGAA GAAACGACGAGGTGGCAAACGCAAAAGACCCACGGTTTCAGAGCCAACAA CAGATAGCGTTGACAGAAAAAGAAAAAGGACTGAACAAACACTTTCAATG TCGACAACTAACAACAGCGACATTGATTTAATTGTTCCGAATGCTAAAAA AGTCTGCCATTCACCTTCGTATGGTGGTGTGAGCAGCCAAACATCTTCGC CAAACAAAAACTCGAATTTTACCGAGGTCTACAATACATGTGTCGAGAGC AACAATAAAAGACCTCGATTCGCGGACTATATCAATTTAGTTTCCCCCGT TTCAAGCAATTCCGAACCCGACCCGGAAATGTTATTGTATCCCTATGATC CCATATTTTTCGTCCCAACTTTAAAAAACATGATCAATAATTCAATAATT CAATAACGTGTCGAGATTTCTTGGAGTGCATGTTACAGCCAAATCCAAGG CTTCGTTCATCCCTCGACGAATTGTTAGGCCACCCATGGCTCACAAATCA GGGGTGTAATTATGTATGAACTCCTAACAGGGGATCTACCCTTCGAAAGC TCCAAGGAAATTGTCAAGTGTGACCGACCACCCGCATTACCTAGCCACCT GAACGTTTCACTCTATTTTGGGCTAGCATACAAAATAAAACACGGTGAAA TGATTTCTGACTTCTGGGGGACACCCGTTTACAATGCACCAGAGGTTGAA CGGGGCGATCCGAGGTTGTACTACCCGCCAACAGAGCTCTACGATCCTAC CAAAAGCGACACATGGAGTTTATCTTACGGGGGGATGACGGTAATGTCAA GATTACAGGGAACACAGTGCAGTCGTCCTAAAAGAAAACATGATAAAAAG AAGAAACGACGAGGTGGCAAACGCAAAAGACCCACGGTTTCAGAGCCAAC AACAGATAGCGTTGACAGAAAAAGAAAAAGGACTGAACAAACACTTTCAA TGTCGACAACTAACAACAGCGACATTGATTTAATTGTTCCGAATGCTAAA AAAGTCTGCCATTCACCTTCGTATGGTGGTGTGAGCAGCCAAACATCTTC GCCAAACAAAAACTCGAATTTTACCGAGGTCTACAATACATGTGTCGAGA GCAACAATAAAAGACCTCGATTCGCGGACTATATCAATTTAGTTTCCCCC GTTTCAAGCAATTCCGAACCCGACCCGGAAATGTTATTGTATCCCTATGA TCCCATATTTTTCGTCCCAACTTTAAAAAACATGATCAATAATTCAATAA TTCAATAACGTGTCGAGATTTCTTGGAGTGCATGTTACAGCCAAATCCAA GGCTTCGTTCATCCCTCGACGAATTGTTAGGCCACCCATGGCTCACAAAT CAGGGGTGTAATTATGTATGAACTCCTAACAGGGGATCTACCCTTCGAAA GCTCCAAGGAAATTGTCAAGTGTGACCGACCACCCGCATTACCTAGCCAC CTGAACGTTTCACTCTATTTTGGGCTAGCATACAAAATAAAACACGGTGA AATGATTTCTGACTTCTGGGGGACACCCGTTTACAATGCACCAGAGGTTG AACGGGGCGATCCGAGGTTGTACTACCCGCCAACAGAGCTCTACGATCCT ACCAAAAGCGACACATGGAGTTTATCTTACGGGGGGATGACGGTAATGTC AAGATTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00041371-exon-sc0002832-1575043694:12506..12542 | TCONS_00041371-exon-sc0002832-1575043694:12506..12542 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1575043694:12192..12348 | TCONS_00041371-exon-sc0002832-1575043694:12192..12348 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1575043694:11268..11380 | TCONS_00041371-exon-sc0002832-1575043694:11268..11380 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1575043694:10651..10745 | TCONS_00041371-exon-sc0002832-1575043694:10651..10745 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1575043694:9577..10062 | TCONS_00041371-exon-sc0002832-1575043694:9577..10062 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1510915933:12506..12542 | TCONS_00041371-exon-sc0002832-1510915933:12506..12542 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1510915933:12192..12348 | TCONS_00041371-exon-sc0002832-1510915933:12192..12348 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1510915933:11268..11380 | TCONS_00041371-exon-sc0002832-1510915933:11268..11380 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1510915933:10651..10745 | TCONS_00041371-exon-sc0002832-1510915933:10651..10745 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1510915933:9577..10062 | TCONS_00041371-exon-sc0002832-1510915933:9577..10062 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1491911889:12506..12542 | TCONS_00041371-exon-sc0002832-1491911889:12506..12542 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1491911889:12192..12348 | TCONS_00041371-exon-sc0002832-1491911889:12192..12348 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1491911889:11268..11380 | TCONS_00041371-exon-sc0002832-1491911889:11268..11380 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1491911889:10651..10745 | TCONS_00041371-exon-sc0002832-1491911889:10651..10745 | Clytia hemisphaerica | exon |
| TCONS_00041371-exon-sc0002832-1491911889:9577..10062 | TCONS_00041371-exon-sc0002832-1491911889:9577..10062 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0002832 | supercontig | sc0002832:9577..12542 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
Vocabulary: Biological Process
| Term | Definition |
| GO:0006468 | protein phosphorylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006468 |
protein phosphorylation |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004672 |
protein kinase activity |
Blast
BLAST of TCONS_00041371 vs. Swiss-Prot (Human)
Match: TSSK3 (Testis-specific serine/threonine-protein kinase 3 OS=Homo sapiens GN=TSSK3 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 9.039e-22 Identity = 48/131 (36.64%), Postives = 77/131 (58.78%), Query Frame = 1
Query: 22 NVKITDFGLAYKI--KHGEMISDFWGTPVYNAPEVERGDPRLYYPPTELYDPTKSDTWSLGVIMYELLTGDLPFESS---KEIVKCDRPPALPSHLNVSLSCRDFLECMLQPNPRLRSSLDELLGHPWLTN 399
N+K+TDFG A + H E+ F G+ Y APEV +G P +D K D WS+GV++Y +L LPF+ + K + + + + P+HL++S C+D L+ +L+P+ LR S++E+ HPWL +
Sbjct: 146 NLKLTDFGFAKVLPKSHRELSQTFCGSTAYAAPEVLQGIP---------HDSKKGDVWSMGVVLYVMLCASLPFDDTDIPKMLWQQQKGVSFPTHLSISADCQDLLKRLLEPDMILRPSIEEVSWHPWLAS 267
The following BLAST results are available for this feature:
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