TCONS_00041368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041368
Unique NameTCONS_00041368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041368 ID=TCONS_00041368|Name=TCONS_00041368|organism=Clytia hemisphaerica|type=transcript|length=574bp
cCGGGATCGATAAACTACTAAAGTCAGTGCTTTACACCCTTTACTGGCAT
TTTGTGTATTTTTATCGTCTAGGAAATTTACTTATGACTCTTAGTCGTCT
AATTCTATTCAGATTCAGTTTTATTGCAGACAATAAAGTTCTGGGTTCGA
GGTTGTAAACGTGCATTTTTCtcgtttagatgtttcaaataCTACATTCA
TGGGATTGTACCCAAAACAAACGCAAAAGATTTTTACCAAGAATAATCAA
CAACGAATTAGATTCAAACGTACCGAGAGAATctttaaaagatttcaaaa
gagTAGATTCAAAGAAACTTCATAAAGATTGCTTTATAACTGATGATGGT
GGCCTGGCTAATTTCTGTTGGTGTTGGCAAATTTTCATTGGGCATCCAAT
GATACAGATAGATTATTAATATCTGTAATCGACCATGCATggactttgaa
aaatttatgGTTCCTTGATTGTGGCAGAATTCTCGAAATGGATACTCTAa
gtaaagaaaacattaaaatgGTTTGTTGCACTGACATGTCTTATATCGTA
ATACTTGCTATGGTTGAAGTGGAN
Run BLAST on NCBI

transcript from alignment at sc0002829:5567..6140

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041368 ID=TCONS_00041368|Name=TCONS_00041368|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at sc0002829:5567..6140 (Clytia hemisphaerica)
NTCCACTTCAACCATAGCAAGTATTACGATATAAGACATGTCAGTGCAAC
AAACcattttaatgttttctttactTAGAGTATCCATTTCGAGAATTCTG
CCACAATCAAGGAACcataaatttttcaaagtccATGCATGGTCGATTAC
AGATATTAATAATCTATCTGTATCATTGGATGCCCAATGAAAATTTGCCA
ACACCAACAGAAATTAGCCAGGCCACCATCATCAGTTATAAAGCAATCTT
TATGAAGTTTCTTTGAATCTActcttttgaaatcttttaaagATTCTCTC
GGTACGTTTGAATCTAATTCGTTGTTGATTATTCTTGGTAAAAATCTTTT
GCGTTTGTTTTGGGTACAATCCCATGAATGTAGtatttgaaacatctaaa
cgaGAAAAATGCACGTTTACAACCTCGAACCCAGAACTTTATTGTCTGCA
ATAAAACTGAATCTGAATAGAATTAGACGACTAAGAGTCATAAGTAAATT
TCCTAGACGATAAAAATACACAAAATGCCAGTAAAGGGTGTAAAGCACTG
ACTTTAGTAGTTTATCGATCCCGg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025347XLOC_025347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041368-exon-sc0002829-1491911889:5567..6140TCONS_00041368-exon-sc0002829-1491911889:5567..6140Clytia hemisphaericaexon
TCONS_00041368-exon-sc0002829-1510915933:5567..6140TCONS_00041368-exon-sc0002829-1510915933:5567..6140Clytia hemisphaericaexon
TCONS_00041368-exon-sc0002829-1575043694:5567..6140TCONS_00041368-exon-sc0002829-1575043694:5567..6140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002829supercontigsc0002829:5567..6140 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.365946	0.477035	0	0	8.14315	9.2517	4.433	12.3845	2.8263	2.43882	3.89588	1.32602	1.23694	1.04267	0.0953329	0.228168	0	0	0.20665	0.756855	0.212774	0.137517	0.117183	0.951306	0.742043	2.71775	0.401621	0	3.82867	2.43973
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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