TCONS_00041360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041360
Unique NameTCONS_00041360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2023

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041360 ID=TCONS_00041360|Name=TCONS_00041360|organism=Clytia hemisphaerica|type=transcript|length=2023bp
ccagtTGCTATTCAAACTGAAAACGTAAATGACACGAACAAAAATGATAC
GAACCAATTATTACATCAAGTCCTGAAATCGAATGAAGAAATAAAAGATA
TGGTGCTACATCTGAAAAATGAAGTGGACattatcaaaaaatttatctGT
AACAAGAAGGCCACATTCAACCACCACCACCCCAATGCAAACCCAAACCC
ACAaccacaaccacaacaacaacaacaacaacaagaagcTCAACCAAGCC
AAGAGATTGACAGTTTTTTCGAGGAAAATATAAGCTATATGTCACTGATG
ACAGATGACTTGTTTCCCAGCCTACAAGAGGAAGCGGTGGAAGAGGAAAC
AGTGGAAGATGAAGATGCCCCCCAACAAAAAAGGGAGCTCCATAATTCCT
TCTCCCAGCACGAGTTGGCGACACACCGTTTCACAGCGGTGAATCGTACG
TTTAAAGGTCAAGAGATCATTTGCGATGCGCTGTCGCCAACTCGGCTGAA
CAGGGCAATTGCCAAAGTCGACCAAAGACACCCTTTGGATATGGCTGACA
TCCGAGCAAGAAACGAATTGGGCGAAACGGTAAACCAAAAATGTAGGGCA
GCCGTGAGAGCCACGAAAAagctactttaatcgtagaaattttagcgaga
ctaaatTTAGCGTTTTGgcaagttttccctattttcgctaaaataaatct
cgctaaaacacgctgaattgacagatcgctaaaatttatccgcgcgaaat
ttctggttatttgccttgatacatttttatcaagtGGAAATAATGTTTTA
GTACAAAGAAACGCAAGAAAACAAGTtaagtcaataatgtaatacgagta
ttcgctaaaatttatccacgagaatttttttgaaatcgtagttcgctaaa
ataaatccaaaaaaaaatcaatatacgctaaaattagtcccgctaaaatt
tctacgattaaagtataaaTTTTATAACATCATTgttctacacgcttttt
ttataagaatgCACTTTACATGACCATCCATcgtgaaaatggccaaaaat
ttaagaaatatgctaagaatatcaccatcatggaatttggaaaCTGAAGC
TAATATTAATGCCATTtgtagagcattttcaattgtAACCTAAGAATGTA
CGAacatttttgaatgattttcccaaaaaagttacaaaaagaaTACCCAT
GGtgatacaccattcttataaaaaaaccgtgTAGTAGGGggcattttcaa
atttcgacacacttcacgtttttttattagaacgcagtttataagaacaa
ttagtctaaattggtttaaaaaatgagaacatcttaaaaacattttcagc
cTGGGCAAAGAgaggtaaaaaaattgagacataatatatcaaattaaaaa
gagttttttaaaagattgtctCAAAGTTGGAAAATGCTAAGTAAAAACAA
GGcaagaaataagaacatttgaggctgaaattcgaagaaaaaataagcac
atttAGACGCAGCCAAAATTAAGGTCTTctaattaaaaaaacgtgtaaat
gtcCTCTagtaatttataattttttcttcgaTGATTGATAATTAAGTCTA
CCTTGAGGGAACTAATTCTCGCAGGATCgagtagcaaaaaaaaattcaaa
gaaaagatAGATTTTTGTCTCAAAGCTGGTGTCGCAAAAATAAGGTCCAG
CAAAAAGTAGTTCCCTTGAAGGCGACTTAAATACTTGAGCAATATCTACA
TTTAGATATACGTTGAATATATTCCAGAAATGCTATAATAATTACCAGTG
ATACTTTTTTGTGTTTAATTGTAAGGAGGGGTAGAATAATGGTACTGGTT
GATAcacaaaaaagtcaaagaaataaACTACAAAATGGACTCCGATGTAT
GTATCTAAATGTAGGTAGTGCAAGACATAGGTTGGACTGATTTTAAAGAC
TTTGTAAGAATATTACATTATTTAGGCTTCAAACCGAAAAAAaggaacat
tcgaaggcttccaAGAATGTtct
Run BLAST on NCBI

protein sequence of TCONS_00041360-protein

>TCONS_00041360-protein ID=TCONS_00041360-protein|Name=TCONS_00041360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
PVAIQTENVNDTNKNDTNQLLHQVLKSNEEIKDMVLHLKNEVDIIKKFIC
NKKATFNHHHPNANPNPQPQPQQQQQQQEAQPSQEIDSFFEENISYMSLM
TDDLFPSLQEEAVEEETVEDEDAPQQKRELHNSFSQHELATHRFTAVNRT
FKGQEIICDALSPTRLNRAIAKVDQRHPLDMADIRARNELGETVNQKCRA
AVRATKKLL
Run BLAST on NCBI

transcript from alignment at sc0002826:10849..14047-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041360 ID=TCONS_00041360|Name=TCONS_00041360|organism=Clytia hemisphaerica|type=transcript|length=3199bp|location=Sequence derived from alignment at sc0002826:10849..14047- (Clytia hemisphaerica)
CCAGTTGCTATTCAAACTGAAAACGTAAATGACACGAACAAAAATGATAC
GAACCAATTATTACATCAAGTCCTGGTAATTTTAATTTACATATAGTAAA
TAGTATAGAATTTTTAAGGTCTTAAGGGCTCTGACCATAGTCAGAAAATT
AATTTTAGTATCTGAACATAAAAGTTATGTTTAAGATTCTTTAACACTTT
TAACAAAGAATTGCCTTTATAAATTGCTTTTTAATCAAACCCCTTAAGAG
TAATTAAGAACTTAATTGCAAAAATGACGTTATNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCTGTCAAAAGTTATGACTGTTTTTTTAAGCAAAATCCAGATGAAAA
ATTGATGAAAAACCACTATTTTGAAGATTTCGACACAAAGAAGCATTTAC
AAAAATTCTCCGCAAAAATTTTTATTGTTCGGTAAAAGATACACCATCTA
CTGCGAAAATTTTTTCAAAATGTTCTTTCTTCGCTGAAACTAAGCTCTTC
AAAGTTGAAATACTCTTCCTCGCAAAAGTCTTCATTTTCTTCTTCATCAA
ATTTTTTTCAATGCAATTTTTGAATTTTCAGATTCAGGAATAGGTTTGTC
TAACAGAAAATGTATCACATGCCATAGTTTTGTTAGTTACATCAGTCAGA
AACACATTTTAAACACGGCAATTATGAAAAATTCACTATGGTCAGAGCCC
TTAACCTTAAGTAAAATTTTACGTGTATGTGAAAAAAGCTTTACAAAAGA
AGGATACTGTTTTCCAATCAATTTATCAACCCTATTTGCTCTAAGGAGGG
GGCTTTTTTATACCGTACCAGCTGAAGACTTTTGTTTTATATCTTCATAA
ATATCAATATTAAATCCTAATCATTTTGCGACTTTTCCTAACAAAGCTTT
AAAAACAGTCGGCATTTGCCGAGATTCACCTTATTATGAGAATAAGCGGT
ACAACTTTTTCATGTCACACTAAAATCAATCCAATTACAACTCTTTTTAA
GAAATCGAATGAAGAAATAAAAGATATGGTGCTACATCTGAAAAATGAAG
TGGACATTATCAAAAAATTTATCTGTAACAAGAAGGCCACATTCAACCAC
CACCACCCCAATGCAAACCCAAACCCACAACCACAACCACAACAACAACA
ACAACAACAAGAAGCTCAACCAAGCCAAGAGATTGACAGTTTTTTCGAGG
AAAATATAAGCTATATGTCACTGATGACAGATGACTTGTTTCCCAGCCTA
CAAGAGGAAGCGGTGGAAGAGGAAACAGTGGAAGATGAAGATGCCCCCCA
ACAAAAAAGGGAGCTCCATAATTCCTTCTCCCAGCACGAGTTGGCGACAC
ACCGTTTCACAGCGGTGAATCGTACGTTTAAAGGTCAAGAGATCATTTGC
GATGCGCTGTCGCCAACTCGGCTGAACAGGGCAATTGCCAAAGTCGACCA
AAGACACCCTTTGGATATGGCTGACATCCGAGCAAGAAACGAATTGGGCG
AAACGGTAAACCAAAAATGTAGGGCAGCCGTGAGAGCCACGAAAAAGCTA
CTTTAATCGTAGAAATTTTAGCGAGACTAAATTTAGCGTTTTGGCAAGTT
TTCCCTATTTTCGCTAAAATAAATCTCGCTAAAACACGCTGAATTGACAG
ATCGCTAAAATTTATCCGCGCGAAATTTCTGGTTATTTGCCTTGATACAT
TTTTATCAAGTGGAAATAATGTTTTAGTACAAAGAAACGCAAGAAAACAA
GTTAAGTCAATAATGTAATACGAGTATTCGCTAAAATTTATCCACGAGAA
TTTTTTTGAAATCGTAGTTCGCTAAAATAAATCCAAAAAAAAATCAATAT
ACGCTAAAATTAGTCCCGCTAAAATTTCTACGATTAAAGTATAAATTTTA
TAACATCATTGTTCTACACGCTTTTTTTATAAGAATGCACTTTACATGAC
CATCCATCGTGAAAATGGCCAAAAATTTAAGAAATATGCTAAGAATATCA
CCATCATGGAATTTGGAAACTGAAGCTAATATTAATGCCATTTGTAGAGC
ATTTTCAATTGTAACCTAAGAATGTACGAACATTTTTGAATGATTTTCCC
AAAAAAGTTACAAAAAGAATACCCATGGTGATACACCATTCTTATAAAAA
AACCGTGTAGTAGGGGGCATTTTCAAATTTCGACACACTTCACGTTTTTT
TATTAGAACGCAGTTTATAAGAACAATTAGTCTAAATTGGTTTAAAAAAT
GAGAACATCTTAAAAACATTTTCAGCCTGGGCAAAGAGAGGTAAAAAAAT
TGAGACATAATATATCAAATTAAAAAGAGTTTTTTAAAAGATTGTCTCAA
AGTTGGAAAATGCTAAGTAAAAACAAGGCAAGAAATAAGAACATTTGAGG
CTGAAATTCGAAGAAAAAATAAGCACATTTAGACGCAGCCAAAATTAAGG
TCTTCTAATTAAAAAAACGTGTAAATGTCCTCTAGTAATTTATAATTTTT
TCTTCGATGATTGATAATTAAGTCTACCTTGAGGGAACTAATTCTCGCAG
GATCGAGTAGCAAAAAAAAATTCAAAGAAAAGATAGATTTTTGTCTCAAA
GCTGGTGTCGCAAAAATAAGGTCCAGCAAAAAGTAGTTCCCTTGAAGGCG
ACTTAAATACTTGAGCAATATCTACATTTAGATATACGTTGAATATATTC
CAGAAATGCTATAATAATTACCAGTGATACTTTTTTGTGTTTAATTGTAA
GGAGGGGTAGAATAATGGTACTGGTTGATACACAAAAAAGTCAAAGAAAT
AAACTACAAAATGGACTCCGATGTATGTATCTAAATGTAGGTAGTGCAAG
ACATAGGTTGGACTGATTTTAAAGACTTTGTAAGAATATTACATTATTTA
GGCTTCAAACCGAAAAAAAGGAACATTCGAAGGCTTCCAAGAATGTTCT

Coding sequence (CDS) from alignment at sc0002826:10849..14047-

>TCONS_00041360 ID=TCONS_00041360|Name=TCONS_00041360|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0002826:10849..14047- (Clytia hemisphaerica)
AAATCGAATGAAGAAATAAAAGATATGGTGCTACATCTGAAAAATGAAGT
GGACATTATCAAAAAATTTATCTGTAACAAGAAGGCCACATTCAACCACC
ACCACCCCAATGCAAACCCAAACCCACAACCACAACCACAACAACAACAA
CAACAACAAGAAGCTCAACCAAGCCAAGAGATTGACAGTTTTTTCGAGGA
AAATATAAGCTATATGTCACTGATGACAGATGACTTGTTTCCCAGCCTAC
AAGAGGAAGCGGTGGAAGAGGAAACAGTGGAAGATGAAGATGCCCCCCAA
CAAAAAAGGGAGCTCCATAATTCCTTCTCCCAGCACGAGTTGGCGACACA
CCGTTTCACAGCGGTGAATCGTACGTTTAAAGGTCAAGAGATCATTTGCG
ATGCGCTGTCGCCAACTCGGCTGAACAGGGCAATTGCCAAAGTCGACCAA
AGACACCCTTTGGATATGGCTGACATCCGAGCAAGAAACGAATTGGGCGA
AACGGTAAACCAAAAATGTAGGGCAGCCGTGAGAGCCACGAAAAAGCTAC
TTTAACCAGTTGCTATTCAAACTGAAAACGTAAATGACACGAACAAAAAT
GATACGAACCAATTATTACATCAAGTCCTGAAATCGAATGAAGAAATAAA
AGATATGGTGCTACATCTGAAAAATGAAGTGGACATTATCAAAAAATTTA
TCTGTAACAAGAAGGCCACATTCAACCACCACCACCCCAATGCAAACCCA
AACCCACAACCACAACCACAACAACAACAACAACAACAAGAAGCTCAACC
AAGCCAAGAGATTGACAGTTTTTTCGAGGAAAATATAAGCTATATGTCAC
TGATGACAGATGACTTGTTTCCCAGCCTACAAGAGGAAGCGGTGGAAGAG
GAAACAGTGGAAGATGAAGATGCCCCCCAACAAAAAAGGGAGCTCCATAA
TTCCTTCTCCCAGCACGAGTTGGCGACACACCGTTTCACAGCGGTGAATC
GTACGTTTAAAGGTCAAGAGATCATTTGCGATGCGCTGTCGCCAACTCGG
CTGAACAGGGCAATTGCCAAAGTCGACCAAAGACACCCTTTGGATATGGC
TGACATCCGAGCAAGAAACGAATTGGGCGAAACGGTAAACCAAAAATGTA
GGGCAGCCGTGAGAGCCACGAAAAAGCTACTTTAACCAGTTGCTATTCAA
ACTGAAAACGTAAATGACACGAACAAAAATGATACGAACCAATTATTACA
TCAAGTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025341XLOC_025341Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041360-proteinTCONS_00041360-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041360-exon-sc0002826-1575043694:13973..14047TCONS_00041360-exon-sc0002826-1575043694:13973..14047Clytia hemisphaericaexon
TCONS_00041360-exon-sc0002826-1575043694:10849..12796TCONS_00041360-exon-sc0002826-1575043694:10849..12796Clytia hemisphaericaexon
TCONS_00041360-exon-sc0002826-1510915933:13973..14047TCONS_00041360-exon-sc0002826-1510915933:13973..14047Clytia hemisphaericaexon
TCONS_00041360-exon-sc0002826-1510915933:10849..12796TCONS_00041360-exon-sc0002826-1510915933:10849..12796Clytia hemisphaericaexon
TCONS_00041360-exon-sc0002826-1491911889:13973..14047TCONS_00041360-exon-sc0002826-1491911889:13973..14047Clytia hemisphaericaexon
TCONS_00041360-exon-sc0002826-1491911889:10849..12796TCONS_00041360-exon-sc0002826-1491911889:10849..12796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002826supercontigsc0002826:10849..14047 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.467217	0.365269	0.626434	0.555181	1.35092	0.619556	1.23382	1.41882	0.410917	0.674124	0.823747	0.473966	0.517314	0.615521	0.463308	0.677464	0.41118	0.797787	1.09606	0.987754	1.21254	1.01723	0.452884	0.726326	1.30486	1.15748	1.05981	1.0753	0.775865	0.691762
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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