TCONS_00041359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041359
Unique NameTCONS_00041359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041359 ID=TCONS_00041359|Name=TCONS_00041359|organism=Clytia hemisphaerica|type=transcript|length=507bp
CTTTCTTTTATGTGCTAATATCTTCTGATACAATGTGATACCCAATTCTC
TCAACTATTCAGCCACATCATTAAATCTCGTACACGGAATCAGGAGCTAT
GAATAGCTTGTGCTCCTAAGCTCTATAACAAGTGTTACTCGCTCCTACCA
GTCGCCCTATCTTTATTGGCAGACAGAGTTCGAGTGCCCCTACTTTTCCG
GATCTTAAGCACTGACCCTAACCTTTTAATAACAGAACCATTCATTTGTA
TCCATTACCAATGCCCtcaattgcttcatttttgttAATAATAGACCGAT
CATGATGGAAGAAAAATCCAAAGAGTTATCCTCTTTCACGAACTCTCAGA
TTATTCCTATTATGGTGGCATCACAGAACCCACCCTAGATCGCCTTGGCG
AAGAACTCAATAAAATCCATTCAGAGACCAATATCATTGCCACTGACTAC
GTTAAGTTAAAACTTGATGTACTCTTTCCAGTGGTGATCAAGTGGTACTT
GTCCACC
Run BLAST on NCBI

transcript from alignment at sc0002826:7079..8959-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041359 ID=TCONS_00041359|Name=TCONS_00041359|organism=Clytia hemisphaerica|type=transcript|length=1881bp|location=Sequence derived from alignment at sc0002826:7079..8959- (Clytia hemisphaerica)
CTTTCTTTTATGTGCTAATATCTTCTGATACAATGTGATACCCAATTCTC
TCAACTATTCAGCCACATCATTAAATCTCGTACACGGAATCAGGAGCTAT
GAATAGCTTGTGCTCCTAAGCTCTATAACAAGTGTTACTCGCTCCTACCA
GTCGCCCTATCTTTATTGGCAGACAGAGTTCGAGTGCCCCTACTTTTCCG
GATCTTAAGCACTGACCCTAACCTTTTAATAACAGAACCATTCATTTGTA
TCCATTACCAATGCCCTCAATTGCTTCATTTTTGTTAATAATAGACCGAT
CATGATGGAAGAAAAATCCAAAGAGTTATCCTCTTTCACGAACTCTCAGA
TTATTCCTATTATGGTGAGTTTTCTTTGTGTTTTTTCCAAAGATTTCATT
TAATTTGACACTCTGAATTATAATTCGGGATATGGTACAGTCTACCAAAA
TTGAGTTTTCTGTCTATCTGTTTCGAACGTTCAATCGATTTTTGAGATAT
TGTACACTTTGCAAAAACGTTTTAAACTTTTTAGAAAAATCAAATTTCTT
ATAAGAAAGTTGTCGCTTTTAGGATCTCTAATCTCTTACTGCATGATTAG
AAAGCTGAAGTCAATCTTTGATATTGTAATTAATCGNTCAAAAACGTTTT
AAACTTTTTAGAAAATCAAAGTTTCTTATAAGAAAGTTGTCGCTTTTAGG
ATCTCTAATCTCTTACTGCATGATTAGAAAGCTGATGTCAATCTTTAATA
TTATAATTAATCGAATTCAATTTTGTATAGGTGGCATCACAGAACCCACC
CTAGATCGCCTTGGCGAAGAACTCAATAAAATCCATTCAGAGGTAATTAC
ACTTTTTCTTTATAAGTATAACGTTTATAAGCATAAGNCTGACCCTAACC
TTTTAATAACAGAACCATTCTTTTGTATCCATTACCAATGCTTTCAATTG
CTTCATTTTTGTTAATAATAGACCGATCGTGATGGAAGAAAAATCCAAAG
AGTTATCCTCTTTCACGAACTATCAGATTATTCCTTTTATGGTGAGTTTT
CTTTGTGATTTTACACTCTGAATTATAATTCGGGATATGGTACAGTCTAC
CAAAATTGAGTTTTCTGTCTATCTGTTTCGAACGTTCAATCGATTTTTGA
GATATTGTACACTTTGCAAAAACGTTTTAAACTTTTTAGAAAAATCAAAG
TTTCTTATAAGAAAGTTGTCGCTTTTAGGATCTCTAATCTCTTACTGCAT
GATTAGAAAGTTGATGTCAATCTTTAATATTATAATTAATCGAATTCAAT
TTTGTATAGGTGGCATCACAGAAGACACCCTAGATCGCCTTGGCGAAGAA
CTCAATAAAATCCATTCAGAGGTAATTACACTTTTTCTTTATAAGTATAA
CGTTTATAAGCATGTTTATAAGCATAATTAGGCTCAGATTTGCCAAAAAA
GCATAATACTAAGCATACTGAAATGCAAAAAATTCTTGCAATTTTTCTAA
AACGTTGATCTTTTTAGGGTNAATTAGGCTCAGATTTGCCAAAAAAAGCA
TAATACTAAGCATACTGAAAAGCAAAAAATTCTTGCAATTTTTCTAAAAC
GTTGATCTTTTTAGGGTAACTTCTAAACCTGTTTAAGCTTTCTTAAACCA
AAGACACGATTTCTCTTTTTTGCTATTATTTTGATGTAATTGATTTTCAT
GTTAAATCAATGAAATTAACGTTAATGTTATGGGTCTTGTTTTAATGATT
AGGACATGTTTATTTTTAAATTTCCATATCTTTTCTATTCTTTTTTCCAG
ACCAATATCATTGCCACTGACTACGTTAAGTTAAAACTTGATGTACTCTT
TCCAGTGGTGATCAAGTGGTACTTGTCCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025340XLOC_025340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041359-exon-sc0002826-1575043694:8596..8959TCONS_00041359-exon-sc0002826-1575043694:8596..8959Clytia hemisphaericaexon
TCONS_00041359-exon-sc0002826-1575043694:8118..8179TCONS_00041359-exon-sc0002826-1575043694:8118..8179Clytia hemisphaericaexon
TCONS_00041359-exon-sc0002826-1575043694:7079..7159TCONS_00041359-exon-sc0002826-1575043694:7079..7159Clytia hemisphaericaexon
TCONS_00041359-exon-sc0002826-1510915933:8596..8959TCONS_00041359-exon-sc0002826-1510915933:8596..8959Clytia hemisphaericaexon
TCONS_00041359-exon-sc0002826-1510915933:8118..8179TCONS_00041359-exon-sc0002826-1510915933:8118..8179Clytia hemisphaericaexon
TCONS_00041359-exon-sc0002826-1510915933:7079..7159TCONS_00041359-exon-sc0002826-1510915933:7079..7159Clytia hemisphaericaexon
TCONS_00041359-exon-sc0002826-1491911889:8596..8959TCONS_00041359-exon-sc0002826-1491911889:8596..8959Clytia hemisphaericaexon
TCONS_00041359-exon-sc0002826-1491911889:8118..8179TCONS_00041359-exon-sc0002826-1491911889:8118..8179Clytia hemisphaericaexon
TCONS_00041359-exon-sc0002826-1491911889:7079..7159TCONS_00041359-exon-sc0002826-1491911889:7079..7159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002826supercontigsc0002826:7079..8959 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186076	0.31426	0.308554	0.395636	2.51195	1.68324	1.61717	1.80493	2.08224	1.29511	0.130356	2.83408	1.86488	1.00978	2.06307	2.59046	2.59292	3.20417	0.546059	2.94254	2.07713	1.90819	1.31489	2.71969	1.19594	1.16486	2.01077	0.714987	2.87515	0.97933
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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