TCONS_00041358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041358
Unique NameTCONS_00041358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041358 ID=TCONS_00041358|Name=TCONS_00041358|organism=Clytia hemisphaerica|type=transcript|length=537bp
TTGATTGATACCCAAATCTTAAGGTgagtttgaatttgattttcttcagg
ATTTATCATTGAAAGGCTTAAGAACCTAATGACCTAAGTGAAAATCAAGT
TGTGCAGTACATTACATTGTGTATTTACTGCAAAATCTTTGTGAGGTTGG
GGGAAGTGTGGTAAAGAGAAGCCCATTGTTGGTTATAGTCTAGAGAAGGA
TTTCTTTTTTTGANGATTCGtaattttttgtcctttttgtttgaaacttt
taaagggataaccagataaaatatgaaaattggctaaaagATTCTTTACA
CAGTCTTTAGTAAGCCctccaaatatttttgagaaataacaTTCCAGATT
CAAGATATGACAATAAGAAATCTCAGTTTTTCGTACCTCATACGTACCTc
atgttgaaattctattgtcttccagcagaaattaaaaattacctaaatat
ttcgactttgaaaaacaagtagcctgtaaaatttggaggttttgctAAGG
ACTATGGAAGGAATCTTTGggctgaattttatttttt
Run BLAST on NCBI

transcript from alignment at sc0002825:27384..27920

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041358 ID=TCONS_00041358|Name=TCONS_00041358|organism=Clytia hemisphaerica|type=transcript|length=537bp|location=Sequence derived from alignment at sc0002825:27384..27920 (Clytia hemisphaerica)
aaaaaataaaattcagccCAAAGATTCCTTCCATAGTCCTTagcaaaacc
tccaaattttacaggctacttgtttttcaaagtcgaaatatttaggtaat
ttttaatttctgctggaagacaatagaatttcaacatgAGGTACGTATGA
GGTACGAAAAACTGAGATTTCTTATTGTCATATCTTGAATCTGGAAtgtt
atttctcaaaaatatttggagGGCTTACTAAAGACTGTGTAAAGAATctt
ttagccaattttcatattttatctggttatccctttaaaagtttcaaaca
aaaaggacaaaaaattaCGAATCNTCAAAAAAAGAAATCCTTCTCTAGAC
TATAACCAACAATGGGCTTCTCTTTACCACACTTCCCCCAACCTCACAAA
GATTTTGCAGTAAATACACAATGTAATGTACTGCACAACTTGATTTTCAC
TTAGGTCATTAGGTTCTTAAGCCTTTCAATGATAAATcctgaagaaaatc
aaattcaaactcACCTTAAGATTTGGGTATCAATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025339XLOC_025339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041358-exon-sc0002825-1491911889:27384..27920TCONS_00041358-exon-sc0002825-1491911889:27384..27920Clytia hemisphaericaexon
TCONS_00041358-exon-sc0002825-1510915933:27384..27920TCONS_00041358-exon-sc0002825-1510915933:27384..27920Clytia hemisphaericaexon
TCONS_00041358-exon-sc0002825-1575043694:27384..27920TCONS_00041358-exon-sc0002825-1575043694:27384..27920Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002825supercontigsc0002825:27384..27920 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.540819	0.738338	2.99001	3.43401	1.47417	0.967591	1.13114	1.56581	0.273443	0.827476	0	0.229649	0.503555	0.298827	0.410884	1.07651	0.405991	0.249677	0.304284	0.360957	0.418316	0.15303	0.372056	0.246724	0.696784	0.932795	1.22647	0.949709	1.08048	0.902757
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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