|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041356 ID=TCONS_00041356|Name=TCONS_00041356|organism=Clytia hemisphaerica|type=transcript|length=1207bp
CCGCCATatggattttttcaaaagttttttatcttttaaaagaCACTTCC
TagatgcaaaatttcatgtctctAGCACTTAGGAATAAAGAGTTATTAAG
ATCTAtaaattctggtctgtaaaatagacaaattttaaTAGGCACTATCT
TTTGAACGCAAGctgttgatttttttaattcatattttAGTTAGGGCTAT
CACATATATGAAAATCCAGAAGATTTGAAGACCCCCATGGCCCTCTATTT
GCAGATTCTATGGGCATTTGCTCTTAAGGTATTAAATCATTTTCTCTTAG
ATTTTCTCTGAGTTTTCCCGGCTGGTTGGAGGATGGACCATTATCAGTCG
GTTGGAAACCATAAAAGATGTGCCCATCCTTCGAATAACAACGACTTGTG
AAAAGAACTATCTAACAAATGTTAGAGCAGTGCTGGCTGGTTGCCGAACT
GAGGAATCTAGATTATATGTGAAGAATTGCTTGAAACTGATGTTGACTTC
GTTTCTACTACGTGAATCCACATTTTCAATCTTTGATCAAACCAAATCTT
ACCCACGGTTGGTTGGAACGTCAGCTAGTTTTGATGAAACAGATCTGAGC
ACCGCTCTACTCGAGAGTGCCTCGTTCGTGgtgaaaattgaagatcaaaT
TATCGCTCAGGCAAACAATTTTATTGAAGCTTTCGGGATCATGACTGCGT
CTTATTACGTTTTCAATTTGGCCTATCCGAAAGAACTGGAATGCACTTTA
ACTTTCATCCAAAAGTACATTTTGGATATTGGTGATTCGACGAAAACCCC
TGCAAGAGTTAGTGGGTTAATTTATTAACCTAAATTTAggacattttttc
aatttatttattgacccacaggaaaaaatcagtaaatcacatgcgtgtga
aaacccATTTTCGCGTGTGATCCTGCACCGATTCACATGCATGTGAAAAG
GGAAATAACATGCCAAAATCACAGGTCAAAACTGGTTCGTGTAAATTTGG
CTTTCACACGTGTTAAATTGAAAATCACATATTACTTGATCAAAACTGGT
TATTATAACACCTTACAGGGTCTCTTACGAACGTCACAATGGTCTCGATT
GAGATACAATAAGGTCTAATTTGGAAACAAACCCATGATGGTCTTAATTG
GAATAAGACCTTATAGGTTCTGCGATAAAGGACTCCGATACGAGTCTTCA
AATGGTC Run BLAST on NCBI protein sequence of TCONS_00041356-protein >TCONS_00041356-protein ID=TCONS_00041356-protein|Name=TCONS_00041356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MLTSFLLRESTFSIFDQTKSYPRLVGTSASFDETDLSTALLESASFVVKI
EDQIIAQANNFIEAFGIMTASYYVFNLAYPKELECTLTFIQKYILDIGDS
TKTPARVSGLIY Run BLAST on NCBI transcript from alignment at sc0002825:3085..5605+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041356 ID=TCONS_00041356|Name=TCONS_00041356|organism=Clytia hemisphaerica|type=transcript|length=2521bp|location=Sequence derived from alignment at sc0002825:3085..5605+ (Clytia hemisphaerica)
CCGCCATatggattttttcaaaagttttttatcttttaaaagaCACTTCC
TagatgcaaaatttcatgtctctAGCACTTAGGAATAAAGAGTTATTAAG
ATCTAtaaattctggtctgtaaaatagacaaattttaaTAGGCACTATCT
TTTGAACGCAAGctgttgatttttttaattcatattttAGTTAGGGCTAT
CACATATATGAAAATCCAGAAGATTTGAAGACCCCCATGGCCCTCTATTT
GCAGATTCTATGGGCATTTGCTCTTAAGGTATTAAATCATTTTCTCTTAG
ATTTTCTCTGAGTTTTCCCGGCTGGTTGGAGGATGGACCATTATCAGTCG
GTTGGAAACCATAAAAGATGTGCCCATCCTTCGAATAACAACGACTTGTG
AAAAGAACTATCTAACAAATGTTAGAGCAGTGCTGGCTGGTTGCCGAACT
GAGGAATCTAGATTATGTAAGTAATTTGAAACCCGCCCACGAAAAGTTTC
TCCAAAATTTATTTCGCAAGTCATTTCAATTATAAGGCAAAAATTCTCAA
CGCATGCTTAAAACAGCAAATATTTGTGATTTTATAGCTATTTTTCTACT
GCATCTTCAGAAAAAAGCTgtcgcgaaatttttcaaatcgttTAGTTTCC
CACAAAGTGGAAgtttccaaaaacttttacatCCTCTAAAACCTTAGAGT
CCCCAAAATTTGTTGTGTTTCCGAAAACTGTTGGCTtaggttttgtttta
aaaaatgtataGTACTTAggagtcatttttttccaacagTCTCGATTGTG
TGATAACTCACCCTCtcagattttgctgaaatttggaccaaaactTATAT
ACAAGAAAAATAGAACCTGAAATTTCACCTCAATATTCAGAAAGTTCTTT
ATATATTGCggctcaaagataggctactatgCAAGTTATGGTTCcctaaa
aatcttcattttgctTGGGAGCAaacatagtttctaccccctaGATttag
aaggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaggggggggggggtcttgg
gATTTTGGAAAAGGGCCTGTCTTCTGTTGATTTTTTGGACCCTGTCATAG
TCAAAATGtagaaatttccttaacttttcctaaataaatgtctgaaaatt
taaaaaagttctgTTGTCGCTGCAAAAAgatacatcttgaattttgctcc
agattagctgtaaaaacaactttctctGCTATTTTTGACAAGGCTTGGTG
ATAAAAATTCTAAACAATATTACTTTCATCATTACAACCATCAAGTAGGC
CAATCCACACTAAAACCGGGCTtctgaaaagtgaaaagtaCCATCAGCAG
GCTTATTTTCTTGCATAAAAGATCATTTGGTTCAAACTTCAGCAAGATCT
GTAAGGGTGAGTTATCACACCATTTTTTGTACTCGAGATTCAAAAATGac
tctttaaaaattctttcttttctcCTGTAGATGTGAAGAATTGCTTGAAA
CTGATGTTGACTTCGTTTCTACTACGTGAATCCACATTTTCAATCTTTGA
TCAAACCAAATCTTACCCACGGTTGGTTGGAACGTCAGCTAGTTTTGATG
AAACAGATCTGAGCACCGCTCTACTCGAGAGTGCCTCGTTCGTGgtgaaa
attgaagatcaaaTTATCGCTCAGGCAAACAATTTTATTGAAGCTTTCGG
GATCATGACTGCGTCTTATTACGTTTTCAATTTGGCCTATCCGAAAGAAC
TGGAATGCACTTTAACTTTCATCCAAAAGTACATTTTGGATATTGGTGAT
TCGACGAAAACCCCTGCAAGAGTTAGTGGGTTAATTTATTAACCTAAATT
TAggacattttttcaatttatttattgacccacaggaaaaaatcagtaaa
tcacatgcgtgtgaaaacccATTTTCGCGTGTGATCCTGCACCGATTCAC
ATGCATGTGAAAAGGGAAATAACATGCCAAAATCACAGGTCAAAACTGGT
TCGTGTAAATTTGGCTTTCACACGTGTTAAATTGAAAATCACATATTACT
TGATCAAAACTGGTTATTATAACACCTTACAGGGTCTCTTACGAACGTCA
CAATGGTCTCGATTGAGATACAATAAGGTCTAATTTGGAAACAAACCCAT
GATGGTCTTAATTGGAATAAGACCTTATAGGTTCTGCGATAAAGGACTCC
GATACGAGTCTTCAAATGGTC Coding sequence (CDS) from alignment at sc0002825:3085..5605+ >TCONS_00041356 ID=TCONS_00041356|Name=TCONS_00041356|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0002825:3085..5605+ (Clytia hemisphaerica)
ATGTTGACTTCGTTTCTACTACGTGAATCCACATTTTCAATCTTTGATCA
AACCAAATCTTACCCACGGTTGGTTGGAACGTCAGCTAGTTTTGATGAAA
CAGATCTGAGCACCGCTCTACTCGAGAGTGCCTCGTTCGTGgtgaaaatt
gaagatcaaaTTATCGCTCAGGCAAACAATTTTATTGAAGCTTTCGGGAT
CATGACTGCGTCTTATTACGTTTTCAATTTGGCCTATCCGAAAGAACTGG
AATGCACTTTAACTTTCATCCAAAAGTACATTTTGGATATTGGTGATTCG
ACGAAAACCCCTGCAAGAGTTAGTGGGTTAATTTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041356-exon-sc0002825-1491911889:3085..3550 | TCONS_00041356-exon-sc0002825-1491911889:3085..3550 | Clytia hemisphaerica | exon |
| TCONS_00041356-exon-sc0002825-1510915933:3085..3550 | TCONS_00041356-exon-sc0002825-1510915933:3085..3550 | Clytia hemisphaerica | exon |
| TCONS_00041356-exon-sc0002825-1575043694:3085..3550 | TCONS_00041356-exon-sc0002825-1575043694:3085..3550 | Clytia hemisphaerica | exon |
| TCONS_00041356-exon-sc0002825-1491911889:4865..5605 | TCONS_00041356-exon-sc0002825-1491911889:4865..5605 | Clytia hemisphaerica | exon |
| TCONS_00041356-exon-sc0002825-1510915933:4865..5605 | TCONS_00041356-exon-sc0002825-1510915933:4865..5605 | Clytia hemisphaerica | exon |
| TCONS_00041356-exon-sc0002825-1575043694:4865..5605 | TCONS_00041356-exon-sc0002825-1575043694:4865..5605 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002825 | supercontig | sc0002825:3085..5605 + |
Blast
The following BLAST results are available for this feature:
|
