TCONS_00041351 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041351
Unique NameTCONS_00041351
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041351 ID=TCONS_00041351|Name=TCONS_00041351|organism=Clytia hemisphaerica|type=transcript|length=300bp
GAAGAAATCACGATAACGATATTCTCAAACTTTTGTAGTGACACATGGTG
ATCTACATCGGTGAACTTTGACTTTaaaattcattcattttccATTTACT
TCTTCTGTATTttacttacataattttatatacaataagaaaaaaataat
attttacaaAACGCTAACTAACAAAAGTATTTTCATATAAATAAATATAA
CAATAAAAATCGAATCTGCATGTCTCCCAGTGGAGCTATAGTAATAACAG
TCTAGTAGTAATCTTGCTATTTTTAATTGCAAGTGGTTTCTGcaaaataa
Run BLAST on NCBI

transcript from alignment at sc0002824:13723..14022

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041351 ID=TCONS_00041351|Name=TCONS_00041351|organism=Clytia hemisphaerica|type=transcript|length=300bp|location=Sequence derived from alignment at sc0002824:13723..14022 (Clytia hemisphaerica)
ttattttgCAGAAACCACTTGCAATTAAAAATAGCAAGATTACTACTAGA
CTGTTATTACTATAGCTCCACTGGGAGACATGCAGATTCGATTTTTATTG
TTATATTTATTTATATGAAAATACTTTTGTTAGTTAGCGTTttgtaaaat
attatttttttcttattgtatataaaattatgtaagtaaAATACAGAAGA
AGTAAATggaaaatgaatgaattttAAAGTCAAAGTTCACCGATGTAGAT
CACCATGTGTCACTACAAAAGTTTGAGAATATCGTTATCGTGATTTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025335XLOC_025335Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041351-exon-sc0002824-1491911889:13723..14022TCONS_00041351-exon-sc0002824-1491911889:13723..14022Clytia hemisphaericaexon
TCONS_00041351-exon-sc0002824-1510915933:13723..14022TCONS_00041351-exon-sc0002824-1510915933:13723..14022Clytia hemisphaericaexon
TCONS_00041351-exon-sc0002824-1575043694:13723..14022TCONS_00041351-exon-sc0002824-1575043694:13723..14022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002824supercontigsc0002824:13723..14022 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.97018	3.60782	6.06275	6.73016	0	0	0	0	0.984227	0	0	0	0.258927	0	0.221071	0.593699	0.601989	0.898683	0	0.433074	0	1.10163	0.503337	0.418116	0	0	0	0	0	0.499815
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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