TCONS_00041349 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00041349
Unique Name	TCONS_00041349
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	928

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0002824:10048..13625+
coding sequence from alignment at sc0002824:10048..13625+

transcript sequence

>TCONS_00041349 ID=TCONS_00041349|Name=TCONS_00041349|organism=Clytia hemisphaerica|type=transcript|length=928bp
ACAGATCAGGTATCGTCAAAAAACAGGCCATTCAATTTGAACAATCTTTT
AAAACCATAATTACTaattgactgaaatttgttttcctttctTAAATTTA
GGTTCGTCTCTTGAACAACGTTACGTGGAAATCTATTTGTGAATTTCAAC
ACCCTCCTAAAATAACCAACCCGCATACAACGATCTATTTGGAGATTGAG
AAAAAGAATGTCTTGTTACCTTGGGAAACAGAGCCAGGGACTTCACGCTC
ACAGCCGAGTCATTATGCTGTTCAAGACAAACCTTATCAATTGCCATCAA
TACGTCCAGATGCGGAGAAACCGAACCCGAAACTCGGAGTTGGTTCTGTT
TCATTCAGTTATAACTCACATTACATGGCCACCAAGAATGACAATATGCC
AAACGTATTATGGGTATGGGATTTGAGAAGCTTGAAATTGGTCAGTCTTT
TGGTACAATGTCACGCCATTAAAGctTTCTCTTGGGATCCAAAAGAAATC
CGTTTGGCTTTATGTGCTGGTACCAACAAACTGTACATGTGGTCATTAGC
TGGTTGTTTGGCTGTTGAGGTGCCTGGTGAAGgtGATATAGCAGTGACCA
GTTTGACTTGGCATGAATCTGGTGATTCCATCTTATTGGCAAGTAAAGAT
CAAATGTGTATGTGTTTCTTGACAAACCCTGAAGACAGCATGTAAGAAAG
TCAATCGACAGCTGTGGTGAGAAaagtatttacttttattttgcCTTGGT
TGCCATGGTGTAATTAATACCAAAATTAGGAATACGTCAACgcaccaaaa
aaaaataaacatacgTTGACAATGTGATACACTATCCAATAATCAAGACA
CACTGTTACATGAAAATGGTGATTGAAATTATTGGATATTATGGTGTGTT
TTCCTGGTGAATTACGAGGAATCATAAT

Run BLAST on NCBI

protein sequence of TCONS_00041349-protein

>TCONS_00041349-protein ID=TCONS_00041349-protein|Name=TCONS_00041349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MATKNDNMPNVLWVWDLRSLKLVSLLVQCHAIKAFSWDPKEIRLALCAGT
NKLYMWSLAGCLAVEVPGEGDIAVTSLTWHESGDSILLASKDQMCMCFLT
NPEDSM

Run BLAST on NCBI

transcript from alignment at sc0002824:10048..13625+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00041349 ID=TCONS_00041349|Name=TCONS_00041349|organism=Clytia hemisphaerica|type=transcript|length=3578bp|location=Sequence derived from alignment at sc0002824:10048..13625+ (Clytia hemisphaerica)
ACAGATCAGGTATCGTCAAAAAACAGGCCATTCAATTTGAACAATCTTTT
AAAACCATAATTACTaattgactgaaatttgttttcctttctTAAATTTA
GGTTCGTCTCTTGAACAACGTTACGTGGAAATCTATTTGTGAATTTCAAC
ACCCTCCTAAAATAACCAACCCGCATACAGTAAGCACTTTACTCTTTGAA
TGCTGTCAATCGAGCTTTTTGATGGCGCTGCCAGTAAAATTTGAACCccc
tttttaaatgttttaaattcgCGGGAATCATGCGCATTGAATCTTTTGAA
ATTATGGAGAATTTTTAACAAAGCCTTCAAAGTTTGATGATCAGGAGAAA
AAAACCCGTTTTGTACTGTTAGAGCAAactctaaaaattgaaatttttgt
tttctgaaGTATGTTATGATGAATGggttgatttctttttgattttcatt
cgAAATGTTTTATTTCAGACGATCTATTTGGAGATTGAGAAAAAGAATGT
CTTGTTACCTTGGGAAACAGAGCCAGGGACTTCACGCTCACAGCCGAGTC
ATTGTAAGTCTCCTATTGTTTGCTATTTTGTGGTTTTTCGTTATAAAATT
CCGTTACATTACTTAGTATACAGTGCTGCGAAATTTCTGCCTTTAAACCT
TTCGTGCATCTTGCTCTCCCCCTAAACAAactcttttgaaatatttatct
tatcaacttaaaattttgcgcATGTGTACCATAATTCACATTGACATCTT
TGCTGTAAATTTTGACATCATTGATGACGTAATAAACCAATGAACTGGAA
TACACAACATCATTATCATGCCATCATTATTTTAATTTGTCGAAAATCGC
TTCCTTCCACCTCAATTTattttcactttaattttttgctcaaaagatAA
TAAAAAGGCAAAATAAAATACCAATTCACATTACTAAAGTTACCTCGGTT
CTAAAATGttcaataaacgccccttctttAAAACGCccacttcgaataaa
cgcccctcttaaaaatcaaaaattttcgaagtaaAACTGTAGAAGGTTGT
TGCTGTTTTCAGTTATCCAAAGGGTATGTACTCTAGTTGTCAGTGCAAAC
CGAATTATAACCAAATAAAAATTACTAAAGAAATCATATTAAACAATTTA
CCTTAGTAAAATTCGCTTGGTAAAagtgatttattttgaaaattaacatt
caaacctttaaatgaaataatagacaaattACATCAAAGAACTGGTGACC
ACTGATAGCATGCTGTGAAAACAGCAACAACCTTCTACAGAATAAAAACG
TAAATTCAGTTTTCTATCCCTGGTAAGGAAAGTCATGTTTCGTCAGGATC
TGATTTGGATAATTTTTCTCTCGATTTGTTATAACTTATAACAAATTGTC
GATTTGTTATAACTTACAACAAATTGTccattttgttttaattcaatTGA
TTTACGTCGATGTGAGGAAGCTAGGCTATAAACTGAAGATAACCATTCTC
TGCTGTTAAATCTGTCTAATCTGCTCAagattatctttccaatgatgtAT
AACTTTGCATTGCATGTTTTCTCATTCAAGAACAATGCATGAAAATGTGt
tgattgtaaatttttttacagTCTTTATCTCTTTAAGCGTAATCTACtct
taccttatcggggaaaacttcgtcggggaaaagtgacgaatattttcccc
gacgaaaattttccccggcgaagttttccccgataaggtatataaaCATT
TCTTAACCTCAAACGGCTCATAATAATTCGTTCCATAGATGCTGTTCAAG
ACAAACCTTATCAATTGCCATCAATACGTCCAGATGCGGAGAAACCGAAC
CCGAAACTCGGAGTTGGTTCTGTTTCATTCAGTTATAACTCACATTACAT
GGCCACCAAGAATGGTAAGGCTATGTTTTCACCtcattttacatcattta
aCACTTTCTTAGATGCATTTACACCTTTGATGGACTGTCACCTTTTGTCG
ACGGTTCAAATTACTAATCTCTAGTCAACAACTCGATTCGAACGTTCAAA
AATCTAAAGttaattataaaaaacattatGGACTAGTCGACTTCAAAACT
GGAGACACTTCCACGGGAAATCTAAGAGCAGTTAGCTTTCTGGTGAGTAA
AAGAATAAGATATACTGAGATATATGTGATTCAAATCCACCATCATCGCA
TGCTTCATTTCAAGTCTTGCCATAGAATGATACCGACTGATAGTAAATTT
TTTGAACGATGAGAGTTGTAGAATCAAGGCTTTGCAATTGACTAAGACAA
TATAACTTCAATCTTCATCCTTCCTTACTTACTTCCTTACNTCAATTGAC
CGCCAGACAATATAACTTCAATCTTCATCCTTCCTTACTTACTTCCTTAC
ATCTTAATCAAATAATCAATTTGTGGTGGAGGGGGGGGTTTAGTGTGAAC
CCGAGTAATGTCTAATAGGAGCATTGAATTTACTTGGAAGGTTGTAATGT
GTATTTTGTACTTTCTAGACAATATGCCAAACGTATTATGGGTATGGGAT
TTGAGAAGCTTGAAATTGGTCAGTCTTTTGGTACAATGTCACGCCATTAA
AGGTATTTAACTTTTGGTGTTTACATTAGTATTGGATAATTATTGTTGTA
AGCAGGTGTAAGTGTCCTCGTACTCTTGTTAAAGTTTCTTGTTACACTAA
GTGAAAGAGAAAATTATCTTGAAGAGATGATTGATTTCTTTAATCTTgac
aatgaaaatttgaaattcctaGAGTTTTTTAAAAGGGTTTTTGAATCGAA
ATTCTTTAGGTTTCAGATACTTCTAACAAACcagttgtattttcattgtt
tcagctTTCTCTTGGGATCCAAAAGAAATCCGTTTGGCTTTATGTGCTGG
TACCAACAAACTGTACATGTGGTCATTAGCTGGTTGTTTGGCTGTTGAGG
TGCCTGGTGAAGGTCAGTCTCCTTATATTAATTATCCTCCTTGCTTATAG
AGATCCGGTTCCATTACCAAGGTCATCTGCTAATATCATTATAATATATT
GAAACATCCTTTGTAACATAATAGTCAACAATTACTGTTAAGATATGAAG
TTACTCGGTTTAATTCGAGGTTACGTGggttttacgccggcccttattac
gctaTCGACGAAAAAATACGAATTTCCTCAGGATTTTATCAGGAAATTAG
GGCAATAGATGGAtccatctttgtttttttaggtGATATAGCAGTGACCA
GTTTGACTTGGCATGAATCTGGTGATTCCATCTTATTGGCAAGTAAAGAT
CAAATGTGTATGTGTTTCTTGACAAACCCTGAAGACAGCATGTAAGAAAG
TCAATCGACAGCTGTGGTGAGAAaagtatttacttttattttgcCTTGGT
TGCCATGGTGTAATTAATACCAAAATTAGGAATACGTCAACgcaccaaaa
aaaaataaacatacgTTGACAATGTGATACACTATCCAATAATCAAGACA
CACTGTTACATGAAAATGGTGATTGAAATTATTGGATATTATGGTGTGTT
TTCCTGGTGAATTACGAGGAATCATAAT

Coding sequence (CDS) from alignment at sc0002824:10048..13625+

>TCONS_00041349 ID=TCONS_00041349|Name=TCONS_00041349|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at sc0002824:10048..13625+ (Clytia hemisphaerica)
ATGGCCACCAAGAATGACAATATGCCAAACGTATTATGGGTATGGGATTT
GAGAAGCTTGAAATTGGTCAGTCTTTTGGTACAATGTCACGCCATTAAAG
ctTTCTCTTGGGATCCAAAAGAAATCCGTTTGGCTTTATGTGCTGGTACC
AACAAACTGTACATGTGGTCATTAGCTGGTTGTTTGGCTGTTGAGGTGCC
TGGTGAAGgtGATATAGCAGTGACCAGTTTGACTTGGCATGAATCTGGTG
ATTCCATCTTATTGGCAAGTAAAGATCAAATGTGTATGTGTTTCTTGACA
AACCCTGAAGACAGCATGTAAATGGCCACCAAGAATGACAATATGCCAAA
CGTATTATGGGTATGGGATTTGAGAAGCTTGAAATTGGTCAGTCTTTTGG
TACAATGTCACGCCATTAAAGctTTCTCTTGGGATCCAAAAGAAATCCGT
TTGGCTTTATGTGCTGGTACCAACAAACTGTACATGTGGTCATTAGCTGG
TTGTTTGGCTGTTGAGGTGCCTGGTGAAGgtGATATAGCAGTGACCAGTT
TGACTTGGCATGAATCTGGTGATTCCATCTTATTGGCAAGTAAAGATCAA
ATGTGTATGTGTTTCTTGACAAACCCTGAAGACAGCATGTAAATGGCCAC
CAAGAATGACAATATGCCAAACGTATTATGGGTATGGGATTTGAGAAGCT
TGAAATTGGTCAGTCTTTTGGTACAATGTCACGCCATTAAAGctTTCTCT
TGGGATCCAAAAGAAATCCGTTTGGCTTTATGTGCTGGTACCAACAAACT
GTACATGTGGTCATTAGCTGGTTGTTTGGCTGTTGAGGTGCCTGGTGAAG
gtGATATAGCAGTGACCAGTTTGACTTGGCATGAATCTGGTGATTCCATC
TTATTGGCAAGTAAAGATCAAATGTGTATGTGTTTCTTGACAAACCCTGA
AGACAGCATGTAAATGGCCACCAAGAATGACAATATGCCAAACGTATTAT
GGGTATGGGATTTGAGAAGCTTGAAATTGGTCAGTCTTTTGGTACAATGT
CACGCCATTAAAGctTTCTCTTGGGATCCAAAAGAAATCCGTTTGGCTTT
ATGTGCTGGTACCAACAAACTGTACATGTGGTCATTAGCTGGTTGTTTGG
CTGTTGAGGTGCCTGGTGAAGgtGATATAGCAGTGACCAGTTTGACTTGG
CATGAATCTGGTGATTCCATCTTATTGGCAAGTAAAGATCAAATGTGTAT
GTGTTTCTTGACAAACCCTGAAGACAGCATGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_025333	XLOC_025333	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00041349-protein	TCONS_00041349-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002824	supercontig	sc0002824:10048..13625 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
47.3727	43.1188	59.3705	55.6872	4.71386	3.93036	4.88546	3.52283	4.57226	4.39025	3.49679	4.07229	3.19041	2.77833	5.90434	3.7736	13.4206	10.3963	2.77547	4.10421	10.8031	9.42064	19.1107	18.1394	7.05455	6.16151	2.4149	3.88828	7.96988	9.62441

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00041349 vs. Swiss-Prot (Human)
Match: WRP73 (WD repeat-containing protein WRAP73 OS=Homo sapiens GN=WRAP73 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.794e-60
Identity = 93/197 (47.21%), Postives = 132/197 (67.01%), Query Frame = 3

Query:  102 VRLLNNVTWKSICEFQHPPKITNPHTTIYLEIEKKNVLL-------PWETEPGTSRSQPSHYAVQDKPYQLPSIRPDAEKPNPKLGVGSVSFSYNSHYMATKNDNMPNVLWVWDLRSLKLVSLLVQCHAIKAFSWDPKEIRLALCAGTNKLYMWSLAGCLAVEVPGEGDIAVTSLTWHESGDSILLASKDQMCMCFL 671
            VR+LN+VTWK I EF HP  I +P   +Y E EK   L        P     G   S  S Y +   P  L +++P  ++ NPK+G+G ++FS +S+++AT+NDN+PN +WVWD++ L+L ++L Q   ++AF WDP++ RLA+C G ++LY+WS AGC++V+VPGEGD AV SL WH SGDS+ L SKD  C+CFL
Sbjct:  247 VRILNHVTWKMITEFGHPAAINDPKIVVYKEAEKSPQLGLGCLSFPPPRAGAGPLPSSESKYEIASVPVSLQTLKPVTDRANPKIGIGMLAFSPDSYFLATRNDNIPNAVWVWDIQKLRLFAVLEQLSPVRAFQWDPQQPRLAICTGGSRLYLWSPAGCMSVQVPGEGDFAVLSLCWHLSGDSMALLSKDHFCLCFL 443

The following BLAST results are available for this feature:

BLAST of TCONS_00041349 vs. Swiss-Prot (Human)

BLAST of TCONS_00041349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WRP73	4.794e-60	47.21	WD repeat-containing protein WRAP73 OS=Homo sapien...	[more]

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TCONS_00041349 (transcript) - C. hemisphaerica