TCONS_00041343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041343
Unique NameTCONS_00041343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3017

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041343 ID=TCONS_00041343|Name=TCONS_00041343|organism=Clytia hemisphaerica|type=transcript|length=3017bp
GCGCTATTGTTCTCCGGCCCCGATCTTATTGAATTTGATGTTGCTCGGGT
CCAATCTTCCGAACAGTCATAaacaaacaagatggcggaaaTTTTGCAAT
GATTCTGTGCCTTATTCTGATTATGTGCtgaattattttgttgttttttt
ctaaattttggtaATGCCTGGAGACTACTGTTCTGTAGTTGGGTGCAGAA
CCTCCAGAAGTACTGGAATATCTATTTTTAAGTTGCCTCAAGACCAAGGT
GATCTTAAAACAAAGCAATGGAGGGCAGCAGTTTTGAATTTTATCACAAA
GGATAGAGTGGTAGACAAAAAGTTCCAAGCTCAAATTGACAACGACAGAG
TTCGTATTTGTGCAAGGCATTTCACAGAGGATTCAATGTGGCATTATGTA
TCTCGGAAAGCACTGAAAGAGGGTGCAATCCCTACATTGCATGCCCCTCA
GAAGTCAATACAAACGGCTCCAAAACCTGAACGATCAACATCATCAATCA
ATAAACGAATCACGGTACAAGCCCAACAGCAGAAAGCAGCATTGTCAATA
CCGACACCACCAGCATACAAAGATTATGATAACTTTGTAAAACGGGTAGA
AAAGTTGAGCCTCCCTCCTTCATGGTCACTCATCATTTATGTCAACTATG
TAGAAGAAAAATCAAGAGTTTGTTCTGCCAGAATTCGAAATTTTTACTAA
CTCCAGCTTGAACATTGTTGTGCGATATTTTGGATGGATGCTTCCTTTGT
CTTCTCTACCAGAGAATTCATTCCGCAAGATGACTCTCACCAACTTTTTG
GGACAGCTTGAAGGATATAAAGTTTGTCAAGgtgTTAATTTGGTGGAACC
TGAGAAAGCATATCATCTGCAACATCATATCATTCCACGTAATTTTATCT
TTGATCATTTATCATCTTCACAAGCCTGTCAGCCTGTCAGTGAGATGAAG
TTCATTCGTGCAAGCAAATGCTCTATTTTGACTCATACCGATGGTCCATG
TCAACATTGTCAAAGTCTTAGTGTAGTCACAAGATCGCAGGAAGCTAAGA
AACGAAAAATTGCATCCACTCCTGCAGCACCAAGAGCTCCCCTTTCAGTC
ACCTCAGCTGAGAGACTAGCTTTAACAGTGAAACAAAATAGGGAGGTTAT
CCAATCATTGATTTCGCAAAATGAAAAGCTGACTGCTCAACTAAAAGCTT
CGATATGTTCTAGATCTGTTCCAGTCCAGAAAGATTTGAGTGACGACCTG
GTTGATATCTTTGAAGGAATTCCTGAGGACAAGGTGCCCCCCTTCATGCG
CCTCTTTTGGACTGAACAGCAAAAGTATCTACGTACCGACAAGAATCATC
AGTTGAGATACCACCCAGATATCATCAAATTTTGCCTATCAATCTCAGCC
AAATCATCTGCTGCATATGACCAACTAAGGTTAAATAGTAAAGATGGCTC
AGGGATCTTGGTTCTCCCTTCCCAAAGAACACTTCGTAACTACCGGAATC
ATATCAAACCTCAACAAGGATTTGATCCTAAAATTGTTGCTGACTTAACT
GAGAGaaccaaaaaattttcagaacgCGAAAAATTTATATCTGTGGTTAT
TGATGAGATGAAGGTTCAAGAAGATCTGGTTTGGGATCGCAGCACTGGAA
AGCTTATTGGTTTTCTCGACCTTGGAGACACTGCTATCAACGAAAGCACT
ATatccaatgaaacaaaactTGCAACCCATGTCATGGTGTTCCTTGTGAA
GAGTGTCATGAATCCACTCTCGTTTAGCTTTGCAACCTTTGCAACCGATA
CTGCTTCATCTGCCcaaatctattctttgttttGGAAGTGTGTAAGCATA
CTGGAAATATCATGTCAGCTTAAAGTAATTGCAACAGTTGCTGATGGAGC
TTCAACCAATCGTCGATTTGCTAAAATGAACAGGGATCAAGATGATGTCA
AGTGTAGTGAAGTCGTTTATCGTACCATCAATGTATATGCACCCGAACGA
TACATTTACTTCTTTGCAGATGCTCCTCACTTAATAAAGACATCACGCAA
TTGTTTGTGGAAATCAGGTCAAGATGGGTCAGCAAGATTTATGTGGAACA
ATGGCTTCTACATGATTTGGCGTCACATCAAAGACCTTTACAAGGAAGAC
ATCGAATTTGGCCTTCAACTCTTACCCCACTTGAAATCTGACCATATCTA
CTTAAACTCGTATTCCTTGATGCGTGTCAAATTGGCAACCCAAATCCTGA
GTGAAACAACAAGCGCCGCCTTATCAGTATCTGGACCAAAGGAAGCGAAA
GGAACTGCCAATTTTTGTTTGcagtttgataaatttttcgatTGCTTCAA
CGTccaattcaaaaggaaacacaTCACTTCACGTAAACCTTTCTTGAAAC
CTTATACGGCAGATTCTGAAGATGAAAAGGAAATAGAGCGCTGGAAATTT
CTCAATGATTTCCTTCAATACTTGAAGGATTGGAGGAAAAGTATCGATGA
AAGGCCTGGCGATTTCACACCAACACAACGAAACAATATGTTTCTGTCCC
AGCCTACTTATGAGGGTATACAAATGTCCATCAATTCACTTAAAGAGATT
GTACCTTATCTTCTAGGACAGGGATTTGAGTATGTGCTCACCGAAAAATT
TTGTCAGGACGATTTAGAGAACTACTTCGGCCGACAAAGGGCAATTGGTG
CAAGAAATGATGCTCCTAATGTTAAACAGGTCTTGTCTAATGATTCTTAT
ATAAAGAATGGTTTCGAGAATGGACCTATCCGTGGTAGCAATtgtgaaaa
atgaaatattcatttttatttacgATTTTTGAAATACAGTATTTGTTGTT
GATAAAATGTAACTGATGCGAAAATTTACATCTTAATGTACAATAGCCTT
TCATTTTGTAGTATATTACCATTTCATATAATATATGTACTAGatcatgg
tttcagccccccgCCCCAGAAATCTGgagggcacctaggccaggttagta
gtGGGGGCTAATGTTTT
Run BLAST on NCBI

transcript from alignment at sc0002820:8149..13199-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041343 ID=TCONS_00041343|Name=TCONS_00041343|organism=Clytia hemisphaerica|type=transcript|length=5051bp|location=Sequence derived from alignment at sc0002820:8149..13199- (Clytia hemisphaerica)
GCGCTATTGTTCTCCGGCCCCGATCTTATTGAATTTGATGTTGCTCGGGT
CCAATCTTCCGAACAGTCATAAACAAACAAGATGGCGGAAATTTTGCAAT
GATTCTGTGCCTTATTCTGATTATGTGCTGAATTATTTTGTTGTTTTTTT
CTAAATTTTGGTAATGCCTGGAGACTACTGTTCTGTAGTTGGGTGCAGAA
CCTCCAGAAGTACTGGAATATCTATTTTTAAGTTGCCTCAAGACCAAGGT
GATCTTAAAACAAAGCAATGGAGGGCAGCAGTTTTGAATTTTATCACAAA
GGATAGAGTGGTAGACAAAAAGTTCCAAGCTCAAATTGACAACGACAGAG
TTCGTATTTGTGCAAGGCATTTCACAGAGGATTCAATGTGGCATTGTAAG
TATTTCACATACTCTTACTCATACTCCTAAAGGCTCTAAAATTTTTATAC
AGATTTAGTCTAATGAAGGAAAAAGAATCACATCCCTCTGATAATTTTGT
GCACTTTTTATCTCCTTTTTCTTTAAAGGTATTACTAAAGTATTAAAGGC
TGACAGGCTGATATTTAGTAAACAAAAGTCCATATCAATCTTACAGTAGG
TAGATGCTGTGGCTAATAAAAATTAGGTAAAATATGATTATAAATGTTAT
TATTTCCTTTTAGATGTATCTCGGAAAGCACTGAAAGAGGGTGCAATCCC
TACATTGCATGCCCCTCAGAAGTCAATACAAACGGCTCCAAAACCTGAAC
GATCAACATCATCAATCAATAAACGAATCACGGTACAAGCCCAACAGCAG
AAAGCAGCATTGTCAATACCGACACCACCAGCATACAAAGATTATGATAA
CTTTGTAAAACGGGTAGAAAAGTTGAGCCTCCCTCCTTCATGGTCACTCA
TCATTTATGTCAACTATGTAGAAGAAAAATCAAGAGTTTGTTCTGCCAGA
ATTCGAAATTTTTACTAACTCCAGCTTGAACATTGTTGTGCGATATTTTG
GATGGATGCTTCCTTTGTCTTCTCTACCAGAGAATTCATTCCGCAAGATG
ACTCTCACCAACTTTTTGGGACAGCTTGAAGGATATAAAGTTTGTCAAGG
TATAAGTCATGCCTTTATATGCTATTATCAGATTATTTCTAGGATCTATC
TAATGACATATTATTAATCTTGACCCTATCCAGCATGTGATATCTTATAC
AGTGACTCAAAGTAATTGTCAATCAGAATGGTATAGGTTTCTTTAACACC
TAGATCTTGTCTTAGGAATATAAAATCAAAATTTTTGTCAAAAATATTGA
AAAAAATTATTTTTTTTAAATTTTCAGGTGTTAATTTGGTGGAACCTGAG
AAAGCATATCATCTGCAACATCATATCATTCCACGTAATTTTATCTTTGA
TCATTTATCATCTTCACAAGCCTGTCAGCCTGTCAGTGAGATGAAGTTCA
TTCGTGCAAGCAAATGCTCTATTTTGACTCATACCGATGGTCCATGTCAA
CATTGTCAAAGTCTTAGTGTAGTCACAAGATCGCAGGAAGCTAAGAAACG
AAAAATTGCATCCACTCCTGCAGCACCAAGAGCTCCCCTTTCAGTCACCT
CAGCTGAGAGACTAGCTTTAACAGTGAAACAAAATAGGGAGGTTATCCAA
TCATTGATTTCGCAAAATGAAAAGCTGACTGCTCAACTAAAAGCTTCGAT
ATGTTCTAGATCTGTTCCAGTCCAGAAAGATTTGAGTGACGACCTGGTTG
ATATCTTTGAAGGTTAGTCTCATGCAATAATCCTAATAATTGTATCAACT
TCATCGAGTGGTTTGTTAAAAGCTATTTTCTTATTTTTTGACTTTTTTCT
TTTTAACAAAAGAACTTAATAATGAGTTATATATTTTGTTAAGGCTTGAG
TCAAGATATAACTTTTGATGGTGAAACTAAAAAGTATTTGATCAATAATT
TTGAATTATTGTTTACTTATATGTAGGAATTCCTGAGGACAAGGTGCCCC
CCTTCATGCGCCTCTTTTGGACTGAACAGCAAAAGTATCTACGTACCGAC
AAGAATCATCAGTTGAGATACCACCCAGATATCATCAAATTTTGCCTATC
AATCTCAGCCAAATCATCTGCTGCATATGACCAACTAAGGTTAAATAGTA
AAGATGGCTCAGGGATCTTGGTTCTCCCTTCCCAAAGAACACTTCGTAAC
TACCGGAATCATATCAAACCTCAACAAGGATTTGATCCTAAAATTGTTGC
TGACTTAACTGAGAGAACCAAAAAATTTTCAGAACGCGAAAAATTTATAT
CTGTGGTTATTGATGAGATGAAGGTTCAAGAAGATCTGGTTTGGGATCGC
AGCACTGGAAAGCTTATTGGTTTTCTCGACCTTGGAGACACTGCTATCAA
CGAAAGCACTATATCCAATGAAACAAAACTTGCAACCCATGTCATGGTGT
TCCTTGTGAAGAGTGTCATGAATCCACTCTCGTTTAGCTTTGCAACCTTT
GCAACCGATACTGCTTCATCTGCCCAAATCTATTCTTTGTTTTGGAAGTG
TGTAAGCATACTGGAAATATCATGTCAGCTTAAAGTAATTGCAACAGTTG
CTGATGGAGCTTCAACCAATCGTCGATTTGCTAAAATGAACAGGGTAAGT
TGCAGAGAAACAGCTTTAAAAACTCATTTTGAAAACTAGTCCTCTATTTT
AGTTTACTTGGTACTATTAGACATGTAGATTATTCTGAAAAATCACAAAT
TGAAATTTACCACACATTTTATGCACTAGCAAAACTTTTTTAAACCCAAA
CTTTTATTATTTTAGGATCAAGATGATGTCAAGTGTAGTGAAGTCGTTTA
TCGTACCATCAATGTATATGCACCCGAACGATACATTTACTTCTTTGCAG
ATGCTCCTCACTTAATAAAGACATCACGCAATTGTTTGTGGAAATCAGGT
CAAGATGGGTCAGCAAGATTTATGTGGAACAATGGTAAGTACTGATAATA
CTAATCAGGATATTTTATGATAAGTTGACCTTTGTCGAGAAGATTCCAGC
TTAAGAAAGAAATTAGGTAAATTGTCATACATCTACTCTACAGCTCANGG
GGGGACGGCTATTAAGTACCCGAGAGTATTGCTCTAGAATCTATTTTCAA
AAATCATTGAAATTATATAATATCTGTGTAGTAAGTAAAACACTGAACAT
TTTCCTGAAAGCACCGACCAACCTCAAATTACATACTAAATCATATACTG
CTATATGATACACTGGCCCTCCCCCAGCTNTTAGTTGGGTGTTATCTACC
GTACTTACACATAACAATCCAAACGCTTCCTTATCAAAAGCGCTGAAATC
CCAAAAAAGTGGCTATACCGCAATTTTGCGATGTTGGCGCTTTCGATTAC
TAGTAGTGGTACGTACGGTAAAATTAAAACTAAGCCGTTTGTGTGATGCG
TGATCGCGGGAAATAATTCGAGGCATGGTGCGTGATTTGGGCTATTATGA
TGTATCAACCACTTTTGGTGATTTGCATGATTGNGTCGATTTGCTAAAAT
GAACAGGGTAAGTTGCAGAGAAACAGCTTTAAAAAACTCATTTTGAAAAC
TAGTCCTCTATTTTAGTTTACTTGGGTACTATTAGACATGTAGATTATTC
TGAAAAATCACAAATTGAAATTTACCACACATTTTATGCCCTAGCAAAAC
TTTTTTAAACCCAAACTTTTATTATTTTAGGATCAAGATGATGTCAAGTG
TAGTGAAGTCGTTTATCGTACCATCAATGTATATGCACCCGAACGATACA
TTTACTTCTTTGCAGATGCTCCTCACTTAATAAAGACATCACGCAATTGT
TTGTGGAAATCAGGTCAAGATGGGTCAGCAAGATTTATGTGGAACAATGG
TAAGTACTGATAATACTAATGAGGATATTTTATGATAAGTTGACCTTTGT
CGAGAAGATTCCAGCTTAAGAAAGAAATTAGGTAAATTGTCATACATCTA
CTCTACAGCTCATTGTTACCCTACTTATATGTCTACACGGTTTTATTTAG
AAGCACAAGCTAGATTTCTGTGATGTTAAAGGGTTTTTGTCAGCTGCTTC
TCTATCCATATAGTGAATACTGTGTTTTGTTTTTAAGGCTTCTACATGAT
TTGGCGTCACATCAAAGACCTTTACAAGGAAGACATCGAATTTGGCCTTC
AACTCTTACCCCACTTGAAATCTGACCATATCTACTTAAACTCGTATTCC
TTGATGCGTGTCAAATTGGCAACCCAAATCCTGAGTGAAACAACAAGCGC
CGCCTTATCAGTATCTGGACCAAAGGAAGCGAAAGGAACTGCCAATTTTT
GTTTGCAGTTTGATAAATTTTTCGATTGCTTCAACGTCCAATTCAAAAGG
AAACACATCACTTCACGTAAACCTTTCTTGAAACCTTATACGGCAGATTC
TGAAGATGAAAAGGAAATAGAGCGCTGGAAATTTCTCAATGATTTCCTTC
AATACTTGAAGGATTGGAGGAAAAGTATCGATGAAAGGCCTGGCGATTTC
ACACCAACACAACGAAACAATATGTTTCTGTCCCAGCCTACTTATGAGGG
TATACAAATGTCCATCAATTCACTTAAAGAGATTGTACCTTATCTTCTAG
GACAGGGATTTGAGTATGTGCTCACCGAAAAATTTTGTCAGGACGATTTA
GAGAACTACTTCGGCCGACAAAGGGCAATTGGTGCAAGAAATGATGCTCC
TAATGTTAAACAGGTCTTGTCTAATGATTCTTATATAAAGAATGGTTTCG
AGAATGGACCTATCCGTGGTAGCAATTGTGAAAAATGAAATATTCATTTT
TATTTACGATTTTTGAAATACAGTATTTGTTGTTGATAAAATGTAACTGA
TGCGAAAATTTACATCTTAATGTACAATAGCCTTTCATTTTGTAGTATAT
TACCATTTCATATAATATATGTACTAGATCATGGTTTCAGCCCCCCGCCC
CAGAAATCTGGAGGGCACCTAGGCCAGGTTAGTAGTGGGGGCTAATGTTT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025329XLOC_025329Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041343-exon-sc0002820-1575043694:12805..13199TCONS_00041343-exon-sc0002820-1575043694:12805..13199Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1575043694:12101..12536TCONS_00041343-exon-sc0002820-1575043694:12101..12536Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1575043694:11438..11872TCONS_00041343-exon-sc0002820-1575043694:11438..11872Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1575043694:10556..11223TCONS_00041343-exon-sc0002820-1575043694:10556..11223Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1575043694:10216..10384TCONS_00041343-exon-sc0002820-1575043694:10216..10384Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1575043694:8149..9062TCONS_00041343-exon-sc0002820-1575043694:8149..9062Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1510915933:12805..13199TCONS_00041343-exon-sc0002820-1510915933:12805..13199Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1510915933:12101..12536TCONS_00041343-exon-sc0002820-1510915933:12101..12536Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1510915933:11438..11872TCONS_00041343-exon-sc0002820-1510915933:11438..11872Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1510915933:10556..11223TCONS_00041343-exon-sc0002820-1510915933:10556..11223Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1510915933:10216..10384TCONS_00041343-exon-sc0002820-1510915933:10216..10384Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1510915933:8149..9062TCONS_00041343-exon-sc0002820-1510915933:8149..9062Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1491911889:12805..13199TCONS_00041343-exon-sc0002820-1491911889:12805..13199Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1491911889:12101..12536TCONS_00041343-exon-sc0002820-1491911889:12101..12536Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1491911889:11438..11872TCONS_00041343-exon-sc0002820-1491911889:11438..11872Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1491911889:10556..11223TCONS_00041343-exon-sc0002820-1491911889:10556..11223Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1491911889:10216..10384TCONS_00041343-exon-sc0002820-1491911889:10216..10384Clytia hemisphaericaexon
TCONS_00041343-exon-sc0002820-1491911889:8149..9062TCONS_00041343-exon-sc0002820-1491911889:8149..9062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002820supercontigsc0002820:8149..13199 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0304143	0	0	0	0.109052	0.11764	0.0523585	0	0	0.0189694	0	0	0	0	0	0	0	0.0586014	0.0523003	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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