TCONS_00041339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041339
Unique NameTCONS_00041339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041339 ID=TCONS_00041339|Name=TCONS_00041339|organism=Clytia hemisphaerica|type=transcript|length=370bp
CCCAAACTTATTTGAAACACTTTGCTTCTTGCTCTTTagttttctttctg
tttatcaTCATATTTTCTTTGCACATTAAAATGCTATATTTTGTTTGTTA
CAAGGATGgatgtattatatcaaagtttATTCCAGGGTATTTCATTAATT
AATTTTGTTAGTATCCCTatgatttttagaatatttcacTTAATGATCAG
CTCCTTAGGACCTATTTAGGTTTTTCATTCTGAAGTGTGAAGGTTTTTTG
AAAGTAAGTTTTAGTATGATCTAATACTAAATCCAATAAGTTTTTCATGT
AGTTTATTTCAGTTTCTAttcattttcaaattgtttcccTTTTATATCAT
TCACGTTATTGAAGGTCAAG
Run BLAST on NCBI

transcript from alignment at sc0002815:11851..12220

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041339 ID=TCONS_00041339|Name=TCONS_00041339|organism=Clytia hemisphaerica|type=transcript|length=370bp|location=Sequence derived from alignment at sc0002815:11851..12220 (Clytia hemisphaerica)
CTTGACCTTCAATAACGTGAATGATATAAAAgggaaacaatttgaaaatg
aaTAGAAACTGAAATAAACTACATGAAAAACTTATTGGATTTAGTATTAG
ATCATACTAAAACTTACTTTCAAAAAACCTTCACACTTCAGAATGAAAAA
CCTAAATAGGTCCTAAGGAGCTGATCATTAAgtgaaatattctaaaaatc
atAGGGATACTAACAAAATTAATTAATGAAATACCCTGGAATaaactttg
atataatacatcCATCCTTGTAACAAACAAAATATAGCATTTTAATGTGC
AAAGAAAATATGAtgataaacagaaagaaaactAAAGAGCAAGAAGCAAA
GTGTTTCAAATAAGTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025325XLOC_025325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041339-exon-sc0002815-1491911889:11851..12220TCONS_00041339-exon-sc0002815-1491911889:11851..12220Clytia hemisphaericaexon
TCONS_00041339-exon-sc0002815-1510915933:11851..12220TCONS_00041339-exon-sc0002815-1510915933:11851..12220Clytia hemisphaericaexon
TCONS_00041339-exon-sc0002815-1575043694:11851..12220TCONS_00041339-exon-sc0002815-1575043694:11851..12220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002815supercontigsc0002815:11851..12220 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.440717	0.644653	0.748504	2.44098	0	0.704474	0.283306	0.530455	0.742768	1.38006	0.446506	1.46758	0.732768	1.52197	1.12614	0.13428	0.330845	0.339105	0.234246	0	0.852221	1.24705	1.01064	0.459407	0	0.21115	1.81293	0.967405	0.733743	1.24595
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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