TCONS_00041320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041320
Unique NameTCONS_00041320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041320 ID=TCONS_00041320|Name=TCONS_00041320|organism=Clytia hemisphaerica|type=transcript|length=369bp
ttccactgacAGATTAGAGAAGGATAATCCGAAGTCGTTAACTCGACAAC
AAAAGAATCAGTTAAATAAATCCCGATTATGTTGGAAACACAAACTCTAT
CCATTGAAAGTTGTCGGCGTCGgcgaaattttttacaaaacttgTACTTT
TACTACAGACGTAGTAAACTGAAAACCCAACTGATATTATTTCTTCTCTC
CTCAAGAATGGCTCAAAGGAGATATTGGATGACCTGTTATGATCAAAACT
GGTTTAGGAATCTTTGGGCGATACGAAATAATCAAATTGCTGCTGAATTA
TTTAAAAAGGAATTCCGTGTTAGTCCACAAACATTTCAAGAAATCATTAA
CATAGTAACACGGCCCATG
Run BLAST on NCBI

transcript from alignment at sc0002804:14515..14883

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041320 ID=TCONS_00041320|Name=TCONS_00041320|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at sc0002804:14515..14883 (Clytia hemisphaerica)
CATGGGCCGTGTTACTATGTTAATGATTTCTTGAAATGTTTGTGGACTAA
CACGGAATTCCTTTTTAAATAATTCAGCAGCAATTTGATTATTTCGTATC
GCCCAAAGATTCCTAAACCAGTTTTGATCATAACAGGTCATCCAATATCT
CCTTTGAGCCATTCTTGAGGAGAGAAGAAATAATATCAGTTGGGTTTTCA
GTTTACTACGTCTGTAGTAAAAGTAcaagttttgtaaaaaatttcgcCGA
CGCCGACAACTTTCAATGGATAGAGTTTGTGTTTCCAACATAATCGGGAT
TTATTTAACTGATTCTTTTGTTGTCGAGTTAACGACTTCGGATTATCCTT
CTCTAATCTgtcagtggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025306XLOC_025306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041320-exon-sc0002804-1491911889:14515..14883TCONS_00041320-exon-sc0002804-1491911889:14515..14883Clytia hemisphaericaexon
TCONS_00041320-exon-sc0002804-1510915933:14515..14883TCONS_00041320-exon-sc0002804-1510915933:14515..14883Clytia hemisphaericaexon
TCONS_00041320-exon-sc0002804-1575043694:14515..14883TCONS_00041320-exon-sc0002804-1575043694:14515..14883Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002804supercontigsc0002804:14515..14883 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33042	0.648682	0	0.736871	14.3531	6.85247	3.99107	5.07082	4.11076	10.4151	0.449296	2.3628	1.4747	0.765743	0.755454	1.08096	1.49811	1.19429	0.942841	0.739961	0.857547	1.56856	0.254238	0.462278	1.42841	2.76211	2.7364	0.648968	0	0.250747
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top