TCONS_00041316 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00041316
Unique Name	TCONS_00041316
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	825

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0002800:3333..8153+
coding sequence from alignment at sc0002800:3333..8153+

transcript sequence

>TCONS_00041316 ID=TCONS_00041316|Name=TCONS_00041316|organism=Clytia hemisphaerica|type=transcript|length=825bp
CTTTGctcgaaaacgaaagcgaaaacgactgggttctaatgatTATGATG
TTTCTGTATacagaaaaacattaaaaatgtaACACAACACCTTCTTTTCA
TTTCAGATTTGTATTTTCAATAACACATTGGAATGGCCTGATCCACTTGG
TGCATTCACCTTTCTAGCACAAGTTGTCGGGATTGTTGGTAAATGCGCAA
TGGATTATGGTCATTTAGTGTTCAACCAATTAAAAGACAAAGGATTCTAT
GATGACGTCGGTCAATTTGATGTCACAGACGAGCTTTGTATCATGATGAA
CAATACAGCACATGTTTTGCAATTCCTTGATTACGTTCCCAAAGCTGCTC
AATTCGACCAATACTTGGATGCAATGCGACTTACTGAACGTGAGAAAGAC
GTGGAAAGATCATCACAAACTCTCCATAATATATTGAATTGTGCTAAAGA
AGACATGAGAAATAAATTGGATCAGATTATACTACATGTTGGGAAAAggA
TGAAGGAAAGTCTGAAAGATTATATTCTTAAGATTATCACCAACAACCAA
AAGACGGTCGACGAATCTTGTGATGATCTTTTGGAgtatattgaaaataa
tttgaccaCCTTGTCATCCTCACTTCTATCTCAAGTCTTTGAACGGATAT
TAGACCACATGTGGAAAGCAGTGCTTGAGTGTATGACGGACCTCACAAag
aaaaaggtaattttttggacctacccagcggcggatctgagggggttcaa
atggttcagctgaaccaccccaacccttttagtaaataaaaaatacaaag
accCTTTCTTCAAGTGAAATCTAGT

Run BLAST on NCBI

protein sequence of TCONS_00041316-protein

>TCONS_00041316-protein ID=TCONS_00041316-protein|Name=TCONS_00041316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MDYGHLVFNQLKDKGFYDDVGQFDVTDELCIMMNNTAHVLQFLDYVPKAA
QFDQYLDAMRLTEREKDVERSSQTLHNILNCAKEDMRNKLDQIILHVGKR
MKESLKDYILKIITNNQKTVDESCDDLLEYIENNLTTLSSSLLSQVFERI
LDHMWKAVLECMTDLTKKKVIFWTYPAADLRGFKWFS

Run BLAST on NCBI

transcript from alignment at sc0002800:3333..8153+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00041316 ID=TCONS_00041316|Name=TCONS_00041316|organism=Clytia hemisphaerica|type=transcript|length=4821bp|location=Sequence derived from alignment at sc0002800:3333..8153+ (Clytia hemisphaerica)
CTTTGctcgaaaacgaaagcgaaaacgactgggttctaatgatTATGATG
TTTCTGTATacagaaaaacattaaaaatgtaACACAACACCTTCTTTTCA
TTTCAGATTTGTATTTTCAATAACACATTGGAATGGCCTGATCCACTTGG
TGCATTCACCTTTCTAGCACAAGTTGTCGGGGTAAGTTCTCATTCCAAAT
TTTACTGTGGAAGTAATTCACCTAGCTTAAACAAATTTTACTCTGGAAGT
AATTAACCTGGCTTGAACAAATTTCTCTCTATAAGTAATCCATCTAGCTT
TACTGAAAGGCATTTAGTAGCATTTCCTCCTGAGTTTCCATTCAAAAATC
CTGGTTGGATGCTAAACCTGTACCATTGTGACCAACAGAATGTTCGTTCT
TCGAAATCTGCGATTTTTAGTATGAATAAAAACTGTGAAAGCATGACCTG
TCGATTCTTTAGTCTTTAGGAGTTTTAAGCTAGAGGTGTCAGAAAAGTTA
TCACAGTGATAACTGGCTTGTGGCAACCAAACGGAATCTGGACCAATCCA
ATCAAGAATACCATATCATCGTTTCTATTTATCAGCTATTTATGTTTTGC
TCGATATTTCAGATTCCAGCTTCATCAAACTGAGCAAATTTCTAGGTCAA
AGAACAATGCTCATAAACAAAATTAAACCGTTATATATTGGTTATTGACA
TGGACACTCCAAATTTGAAGGCTCGACGCCGTCACTgcgcttgggggggg
gggttgaaccTCCCgacgcattctacacgttcgggagactctgcaaaaaa
aattctacatCATTTATATCTCttataaactaaaattttggtcattccct
tgagaacggaccgagtccgaaaaatgtcgggaaaaatcaaaatataatag
ctgcattctttttcaccgttcaacatctTATAAACTAAAATAAATGATAG
CTTTTTTCTCTCCCATGCCCCGCGAGCACAGGAGAGaaataattttgtta
attttgcttTGTATGCATTAGAGGCGAGCGATTCCTTTCTGAATCATAAA
AAGATAAAGATACCTTGAAAACGATCTAGGCCCAAACATATTGGAAATTC
CTGTTTCGTTCCCCCGTCTAATATAAAAGAGAATAtctttaaccaataga
atggatTGATTTCGCTTTGAAACAGAGTGGAACCATAGAAGcatttgtct
gtacacagacccgatatttacggctaatttcaaaattccatccCTTCTAC
GAAGCGATTAACGTGAGATatactctggtacagagtatagAAGTATAAGA
TCGTAATTAATGGATGGATTTATGGTAACCTCTTTGTATATTGTTTTGTC
TCTAACATTGTCTGTAACAACCTTTTTCAGATTGTTGGTAAATGCGCAAT
GGATTATGGTCATTTAGTGTTCAACCAATTAAAAGACAAAGGATTCTATG
ATGACGTCGGTCAATTTGATGTCACAGACGAGGTAAGATATGGTAATTTT
CCATCTAGCCCTTATAACACTATTAACTTTGTGACTTctctttttattta
ctttttcggCATACGCAATCGATCGTCTGAAATCAAATACCGTATAACtg
cgaataaacgcccctttctTTTAAGCGCCCCTATCGAATAAACGCCCAAG
CCGAATGGAGAGAAGTTAAAATAAAGGATTAATCCTTCGTGGGTTGTCCC
CCTAAATCTGGGTCTAGTATGGAAAAGATTTCGTCGCAAACTTGTTCttc
gcaaaaaataaatattaaatctttgtagcaaaaaagaacaatagattttt
aatTCCAGGCATATGTCTGGCTTTAAATTTTGTTAGCAGATATTCGCGAC
GAACTAAATTTTTTCGAGTGGACCCCAACCTTAAATGCTTCTAACTAAGT
AGTAGAAAGAGTACTAGATAGGCTTAATACTTACAGATTTCCTGTGAAAG
TGTTCCCAGTTTAAAAGCCAACTCGACCGCCATTTTACCTCAgaatttcg
aacgttcgaatttcaaaacattttaattccttagttaattaaataataaa
ataatagaaAACAAAATAGCGAACTAGCCAGCTCAATAGTTGAAAACGCT
TCTGCTGTTATAGGCCATTTgacagtcgaaatgaatcatgggtaatcagg
actgattgcgcctccataacCGGCTTTCTGTTGTCTAGACgcaatgattt
ttaaaaaaattcaaaactttggactAATAGTAATTCGTCATTAGTGCgta
gtggtcctgattacccattacgctttgcgtcTGTGAAATGGCCTACAGAA
AGTCCAATCCAGTCAATTAGTTCAAGATTAGTTTTCTATACTGTATCTTT
TTGTCTACAGCTTTGTATCATGATGAACAATACAGCACATGTTTTGCAAT
TCCTTGATTACGTTCCCAAAGCTGCTCAATTCGACCAATACTTGGATGCA
ATGCGACTTACTGAACGTGAGAAAGACGTGGAAAGATCATCACAAACTCT
CCATAATATATTGAATTGTGCTAAAGAAGACATGAGAAATAAATTGGATC
AGATTATACTACATGTTGGGAAAAgggtttgttttcatttttaataatgg
ctacatacactacataCATTACATTGTCAGACAATATATTGGCGAGTACC
AGCAATATATTGTAAAGTGCTCACAATAAACTTTAAAAGTGTccgaaata
tattgaaaaggtgttcACAATTTTTTACCAGCTAAATTTGTagtattcca
acaatataggggaattttctatggaaagaaaattcctttatCTAACAGGG
CACCTGTTATTCGAATATTGTTcgccaatatattgtgtagtctaaatAAG
CCCTATATTAATAATTCTGGAAGCCTATTGTTCGAATCAGAGAGAGATTT
GAATGATTGAAAATATCTCACGAGATTCAGTTCGAACtttcgaaagattc
gaataatagaggccCCCCAATtcaccttcaattcacgcaatcgcGCAATT
TTTTTCCCAACTTTACgcaattttctttgaatttttacgcattcacgcaa
gtgaaaaagcccattcacgcattcacgccgCTGGGGGCCCCAATAATAGG
AGTTCGAATTAGCTATATTTCATTGTAATCCTTTTTTCTTTTCACCTAGA
TGAAGGAAAGTCTGAAAGATTATATTCTTAAGATTATCACCAACAACCAA
AAGACGGTCGACGAATCTTGTGATGATCTTTTGGAgtatattgaaaataa
tttgaccaCCTTGTCATCCTCACTTCTATCTCAAGTCTTTGAACGGTAAT
TATATtaaatagtagggggccaagcctggggttccatgacatcttttcta
cgacctagccatttttagtctattccaaagaacagtatattacaacgTCA
GTACGATCAAAAGACAAGATCTGACGTCAAATCGCAGTAGAGCTGACAGT
Cagttggtcttaaagcggctgtattcctttgtttgttttagtcagagagt
tgctgtaatataattttttgctcagaattccatgctctatcagatggtac
caatcattttcgtttattttgacttttggaaATAAGCTAattctctaccc
cttattttcccttgcaattttgcctatggcgtcactattttggtcataaa
aagttttcccgggcgtaatccgcgtcctccctctcaaaaatatctgtATA
CTATATATCTATATACTGTTCTtttgaatagactaaaaatggctaggtcg
tagaaaagatgtcacggagcccaaggcttggcccccttctaaaagagatt
tttatttttcttcctgCGTAGACTAGGATTTTAGtgagttttttatttaa
agaaattaaGTGATCAAGCATTGCATATAGAATTATGTATCGAATGCGAT
ATTCCCTATGGGTtattatttttcatcattttcatttcaagtCTTCGAAC
GGTAATTATATTCTTTGAAGCTTCTGCAATGAAATATTTCAGAGACGTAA
TAGCATGGTTACAGTGACCCTATATTTTTTTGCAGACAGATATTGAGACA
TATATATCATGAGACTACACTTAAGTAATGCCAAGTTAAGGAGGCTTTTC
CCTGGTTGAGTCATATCATGTTTGGGGTGTGGTACTATTTTCCTTGATCT
ACCTATACACTAAGATTGAATATTAATTACCCTGTAATTGACCCCAATTG
TCACgtaagattttcgatatttttgaaGAATTCTTATCTCAGATCCGCGA
AGAGGAGCTTTGTACATGAAAGATATAATTCTGATACAAGTATCATGGAT
GATATTTTCACAATTAGTTAGAGACCTCATTGTAGCGTATATAAAAAGTA
CCCATTTCTCAAAAGGAGAGTGAGCTCTACCATTTAATTTAAAAGAGGAG
TCTTCGATCATtctcaaacaagaaaaagtgaagccttataCTTAACGCTG
CTTTTCGAatgctttttttgttttcttgcgGCATTTCCGAAATTTAGAGA
TGgaatttactttcaatctgtcgtttgtgtgaaaaccacgcgggtcacGC
GTTTCAGATGGCAAGAGTTTTATAAACTCGATCAGCTTTACCTTATCTCG
TGTATAACGAAATACTTATCTTTTTTCGTCATTTTATTTAGGATATTAGA
CCACATGTGGAAAGCAGTGCTTGAGTGTATGACGGACCTCACAAagaaaa
aggtaattttttggacctacccagcggcggatctgagggggttcaaatgg
ttcagctgaaccaccccaacccttttagtaaataaaaaatacaaagaccC
TTTCTTCAAGTGAAATCTAGT

Coding sequence (CDS) from alignment at sc0002800:3333..8153+

>TCONS_00041316 ID=TCONS_00041316|Name=TCONS_00041316|organism=Clytia hemisphaerica|type=CDS|length=2256bp|location=Sequence derived from alignment at sc0002800:3333..8153+ (Clytia hemisphaerica)
ATGGATTATGGTCATTTAGTGTTCAACCAATTAAAAGACAAAGGATTCTA
TGATGACGTCGGTCAATTTGATGTCACAGACGAGCTTTGTATCATGATGA
ACAATACAGCACATGTTTTGCAATTCCTTGATTACGTTCCCAAAGCTGCT
CAATTCGACCAATACTTGGATGCAATGCGACTTACTGAACGTGAGAAAGA
CGTGGAAAGATCATCACAAACTCTCCATAATATATTGAATTGTGCTAAAG
AAGACATGAGAAATAAATTGGATCAGATTATACTACATGTTGGGAAAAgg
ATGAAGGAAAGTCTGAAAGATTATATTCTTAAGATTATCACCAACAACCA
AAAGACGGTCGACGAATCTTGTGATGATCTTTTGGAgtatattgaaaata
atttgaccaCCTTGTCATCCTCACTTCTATCTCAAGTCTTTGAACGGATA
TTAGACCACATGTGGAAAGCAGTGCTTGAGTGTATGACGGACCTCACAAa
gaaaaaggtaattttttggacctacccagcggcggatctgagggggttca
aatggttcagctgaATGGATTATGGTCATTTAGTGTTCAACCAATTAAAA
GACAAAGGATTCTATGATGACGTCGGTCAATTTGATGTCACAGACGAGCT
TTGTATCATGATGAACAATACAGCACATGTTTTGCAATTCCTTGATTACG
TTCCCAAAGCTGCTCAATTCGACCAATACTTGGATGCAATGCGACTTACT
GAACGTGAGAAAGACGTGGAAAGATCATCACAAACTCTCCATAATATATT
GAATTGTGCTAAAGAAGACATGAGAAATAAATTGGATCAGATTATACTAC
ATGTTGGGAAAAggATGAAGGAAAGTCTGAAAGATTATATTCTTAAGATT
ATCACCAACAACCAAAAGACGGTCGACGAATCTTGTGATGATCTTTTGGA
gtatattgaaaataatttgaccaCCTTGTCATCCTCACTTCTATCTCAAG
TCTTTGAACGGATATTAGACCACATGTGGAAAGCAGTGCTTGAGTGTATG
ACGGACCTCACAAagaaaaaggtaattttttggacctacccagcggcgga
tctgagggggttcaaatggttcagctgaATGGATTATGGTCATTTAGTGT
TCAACCAATTAAAAGACAAAGGATTCTATGATGACGTCGGTCAATTTGAT
GTCACAGACGAGCTTTGTATCATGATGAACAATACAGCACATGTTTTGCA
ATTCCTTGATTACGTTCCCAAAGCTGCTCAATTCGACCAATACTTGGATG
CAATGCGACTTACTGAACGTGAGAAAGACGTGGAAAGATCATCACAAACT
CTCCATAATATATTGAATTGTGCTAAAGAAGACATGAGAAATAAATTGGA
TCAGATTATACTACATGTTGGGAAAAggATGAAGGAAAGTCTGAAAGATT
ATATTCTTAAGATTATCACCAACAACCAAAAGACGGTCGACGAATCTTGT
GATGATCTTTTGGAgtatattgaaaataatttgaccaCCTTGTCATCCTC
ACTTCTATCTCAAGTCTTTGAACGGATATTAGACCACATGTGGAAAGCAG
TGCTTGAGTGTATGACGGACCTCACAAagaaaaaggtaattttttggacc
tacccagcggcggatctgagggggttcaaatggttcagctgaATGGATTA
TGGTCATTTAGTGTTCAACCAATTAAAAGACAAAGGATTCTATGATGACG
TCGGTCAATTTGATGTCACAGACGAGCTTTGTATCATGATGAACAATACA
GCACATGTTTTGCAATTCCTTGATTACGTTCCCAAAGCTGCTCAATTCGA
CCAATACTTGGATGCAATGCGACTTACTGAACGTGAGAAAGACGTGGAAA
GATCATCACAAACTCTCCATAATATATTGAATTGTGCTAAAGAAGACATG
AGAAATAAATTGGATCAGATTATACTACATGTTGGGAAAAggATGAAGGA
AAGTCTGAAAGATTATATTCTTAAGATTATCACCAACAACCAAAAGACGG
TCGACGAATCTTGTGATGATCTTTTGGAgtatattgaaaataatttgacc
aCCTTGTCATCCTCACTTCTATCTCAAGTCTTTGAACGGATATTAGACCA
CATGTGGAAAGCAGTGCTTGAGTGTATGACGGACCTCACAAagaaaaagg
taattttttggacctacccagcggcggatctgagggggttcaaatggttc
agctga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_025302	XLOC_025302	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00041316-protein	TCONS_00041316-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002800	supercontig	sc0002800:3333..8153 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.93931	7.67152	3.73732	2.15922	5.81812	4.41422	8.25136	9.26038	11.2147	11.5245	10.9768	8.91706	9.69657	11.1823	4.81576	5.39126	2.61764	3.95049	7.67964	7.74456	5.10185	5.61693	3.21132	5.05832	15.6174	13.8146	2.29407	1.27857	1.93482	1.48891

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR014772	Munc13_dom-2

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00041316 vs. Swiss-Prot (Human)

BLAST of TCONS_00041316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00041316 (transcript) - C. hemisphaerica