TCONS_00041296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041296
Unique NameTCONS_00041296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041296 ID=TCONS_00041296|Name=TCONS_00041296|organism=Clytia hemisphaerica|type=transcript|length=524bp
TCACCCAACAGTTCTTGTGCAAAGAAAACAGAAACACCAGAATCACATGT
CAAGAGAAAACCAGACTCCCTTACGAAATGATCACAAAataAATCCTATC
CAGATCGACCTCCAAATAAAGGAGGATCTTCGCCTGTCGGTTCTTTTGCC
AAGGAACCAGAATCCCCTGTCAAGAGAAAACCAGACTCCCTTACAAAAAG
ATCAAAATCAGACAGGCGTGAGGATCCACCACCAAATTCAGCTTACAACG
TGCCAGATTCTGAGGacgatgaagatgaaaattacTGGAGAGCATCTGAC
ACCGAAAGAACTCCTACAAAAGAGACTCACTTCCAAATAACTGACAGTCG
AGATTCCAACAGTAACTTTTTGTGTTCGACAAGAAAATCCCCATGCCTTG
CATTAAAGAATTCTCCCTATGCTCGGAAATCTCTTGGCTTTAACGAAAGC
AGCAGTGACACAgGCAAACGCTCTAACAAAGATGTCATGCTCAAAAAATA
AGGAGCGCTATCCGCTATCTACAG
Run BLAST on NCBI

transcript from alignment at sc0002790:1955..3504+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041296 ID=TCONS_00041296|Name=TCONS_00041296|organism=Clytia hemisphaerica|type=transcript|length=1550bp|location=Sequence derived from alignment at sc0002790:1955..3504+ (Clytia hemisphaerica)
TCACCCAACAGTTCTTGTGCAAAGAAAACAGAAACACCAGAATCACATGT
CAAGAGAAAACCAGACTCCCTTACGAAATGATCACAAAGTAAGCATTGCT
AAAAGGATTCTCATGTCACTCCATACTTTATTTAATCAATAACATTTGCC
AATTTTTGTCTTTACGGGCAAATTATCACTATCCCTTAAAGTTTTCAGTC
TTCTAGTCTAAATTATCCCCTTTAATAGataaatattaagaatttctACT
TTATTTATGACTCTTTTTGGTTATTAGGCATATTTTAAGAGTATTTCAAG
AAAttatttcatattattttttcttcagataAATCCTATCCAGATCGACC
TCCAAATAAAGGAGGATCTTCGCCTGTCGGTTCTTTTGCCAAGGAACCAG
AATCCCCTGTCAAGAGAAAACCAGACTCCCTTACAAAAAGATCAAGTAAG
CATCTCTAAAATGTCAACTACactctatttttcttataagcatatggtAA
ATTTCAGTTAAAACTTGATATGCTTCAGTAAAGCTTGATTATGGAGCATC
AAATTATACTAAACCCCGTGTTTAGCAAAAACCCCGTGCTTAGCAAAAAC
CTTTCGTTTTCATAAGGGCAATGATTTGAAGAcccttcttctttattttc
tagAATCAGACAGGCGTGAGGATCCACCACCAAATTCAGCTTACAACGTG
CCAGATTCTGAGGacgatgaagatgaaaattacTGGAGAGGTAAAAGAAT
gctttgttttttatatttcatgatattcGGGCCAAGGCTTCTGCAGGACC
GTGAAAGCCATGGGACAGTTGAAAAATAGTTCATAGGCACTATGTAGGCA
CTTTTGGATGAAACATGGAAAATGGCACGCTtttaattttccctttttta
tttCAGCATCTGACACCGAAAGAACTCCTACAAAAGAGACTCACTTCCAA
ATAACTGACAGTCGAGGTACTTATAGTAAAAGACTTTCAAGGCTTATAAA
TGAACGCAAAATAAATTAATGAGTCCATGGTAGAACATCTAGAGAATTTT
AGTCTTTTTTCTATTCCGTATAGTACAGTAGCTCCAAAGTGTAATGTAAT
CCGTACTCAAACCAGCGTTAATGATTAATTATATCTTGTTTTCCTCAGAT
TCCAACAGTAACTTTTTGTGTTCGACAAGAAAATCCCCATGCCTTGCATT
AAAGAATTCTCCCTATGCTCGGAAATCTCTTGGCTTTAACGAAAGCAGCA
GTGACACAggtcaaaaataatttgtttataATCTTTCGTCCGTTATCAGA
TATATATTAGGTTGCCACTGTTAAAAAGTGTTCATAAGATTTAGGTTTTT
GACAGACCTTAAACGGAGAGGAGAAATATTGCTTTTGTTTGGGGTTCAAT
AGACACAACTGAGCGCAAAAGGTTGTTTGTTAcatctaagaaaagtttga
aaatctcatCATCACAACTTttgacttctttatttttagGCAAACGCTCT
AACAAAGATGTCATGCTCAAAAAATAAGGAGCGCTATCCGCTATCTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025285XLOC_025285Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041296-exon-sc0002790-1491911889:1955..2042TCONS_00041296-exon-sc0002790-1491911889:1955..2042Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1510915933:1955..2042TCONS_00041296-exon-sc0002790-1510915933:1955..2042Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1575043694:1955..2042TCONS_00041296-exon-sc0002790-1575043694:1955..2042Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1491911889:2283..2399TCONS_00041296-exon-sc0002790-1491911889:2283..2399Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1510915933:2283..2399TCONS_00041296-exon-sc0002790-1510915933:2283..2399Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1575043694:2283..2399TCONS_00041296-exon-sc0002790-1575043694:2283..2399Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1491911889:2608..2694TCONS_00041296-exon-sc0002790-1491911889:2608..2694Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1510915933:2608..2694TCONS_00041296-exon-sc0002790-1510915933:2608..2694Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1575043694:2608..2694TCONS_00041296-exon-sc0002790-1575043694:2608..2694Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1491911889:2861..2920TCONS_00041296-exon-sc0002790-1491911889:2861..2920Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1510915933:2861..2920TCONS_00041296-exon-sc0002790-1510915933:2861..2920Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1575043694:2861..2920TCONS_00041296-exon-sc0002790-1575043694:2861..2920Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1491911889:3103..3213TCONS_00041296-exon-sc0002790-1491911889:3103..3213Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1510915933:3103..3213TCONS_00041296-exon-sc0002790-1510915933:3103..3213Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1575043694:3103..3213TCONS_00041296-exon-sc0002790-1575043694:3103..3213Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1491911889:3444..3504TCONS_00041296-exon-sc0002790-1491911889:3444..3504Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1510915933:3444..3504TCONS_00041296-exon-sc0002790-1510915933:3444..3504Clytia hemisphaericaexon
TCONS_00041296-exon-sc0002790-1575043694:3444..3504TCONS_00041296-exon-sc0002790-1575043694:3444..3504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002790supercontigsc0002790:1955..3504 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.225256	0	0	0	41.7683	27.1248	14.6249	15.8606	3.13201	9.24214	4.56428	2.70034	2.9213	2.5548	0	0.137264	0.0845492	0	0	0	0	0	0	0.117404	3.6277	5.18022	0	0	0	0.127363
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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