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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041295 ID=TCONS_00041295|Name=TCONS_00041295|organism=Clytia hemisphaerica|type=transcript|length=992bp
TGTGAGTCTTGAATAGAAGTGCgactttatttttaaattggTTTTCCACC
GTCGGATAGTAATTTATTGCTTTAATTTCGAAagcaataaagaaaatgaa
tgcCAATGGTAGCCACAATTTCACTATGAACAATGGTAATATCACTATCG
ATAGCGATAATTTCACCACTGATGGTAGCGCCAGTGGTAGCGGTGAAATT
GATCCAGAGGTTCTAGTGAATATTCGTGAAGTAGCCGAAGAAATTGACAA
TTACTACGTTCTTAATATTTTCCCTGGTTTGGTTGCGATTGGTGGTTTCT
GGAATCTGCTTATCATCGTTTACTTcgtcaaaatcaatttgaagAAAGGA
TTAAAGCGAATGAGCTCGTATCATCTTCTGATCATTAATCTTGCTTTGGC
CGATCTATCCATCTGCATTGGTGTACCAATTGCCTTTCATTTCCTTTCCA
AACACACATGGGAACTCCCGGTATTTGCATGTCTTATATTCCGTGTTTAT
TTCCTGAAAGTTGTTCCAATGACAGCATCTTGGGCACTGACCTTAATTTC
TTTTGCTAGATATCGCTCCATTACCTACCCAATGGCTGTGcgaatcaata
aaaagaaatacgGACTAGCTTGTATTTTGATTTGGGTTATACCAACTCTG
ATCAATATTTCTGATTTTCTGCGGATTAAATTGGTGTATTATTCTGAGGA
GGATAGCCATAGTTGTGACTACGACTATACCGAAAGAGACCAGATACCAA
TGGTTGAACCTCAAGAAATCGTCAATTACGTGCTCGACGGCTTCATCCCT
CTAGCACTAATGGTGTATTTCTACTACCGAATGTCAAAAGCGATACACCA
AGATGAAAATGCTAATTCGTTTGCACTGAGTGACCAAAGCCGATCAAGGA
ATCGGGCAGCGCTGAGAACAATTAGCGGGCTTATATACGTGTTTACTTTT
AGCGTCATGACAGCAAGAATGCTGGATGTTTTCCTAATGGNN Run BLAST on NCBI protein sequence of TCONS_00041295-protein >TCONS_00041295-protein ID=TCONS_00041295-protein|Name=TCONS_00041295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MNANGSHNFTMNNGNITIDSDNFTTDGSASGSGEIDPEVLVNIREVAEEI
DNYYVLNIFPGLVAIGGFWNLLIIVYFVKINLKKGLKRMSSYHLLIINLA
LADLSICIGVPIAFHFLSKHTWELPVFACLIFRVYFLKVVPMTASWALTL
ISFARYRSITYPMAVRINKKKYGLACILIWVIPTLINISDFLRIKLVYYS
EEDSHSCDYDYTERDQIPMVEPQEIVNYVLDGFIPLALMVYFYYRMSKAI
HQDENANSFALSDQSRSRNRAALRTISGLIYVFTFSVMTARMLDVFLMX Run BLAST on NCBI transcript from alignment at sc0002789:14138..15129 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041295 ID=TCONS_00041295|Name=TCONS_00041295|organism=Clytia hemisphaerica|type=transcript|length=992bp|location=Sequence derived from alignment at sc0002789:14138..15129 (Clytia hemisphaerica)
NNCCATTAGGAAAACATCCAGCATTCTTGCTGTCATGACGCTAAAAGTAA
ACACGTATATAAGCCCGCTAATTGTTCTCAGCGCTGCCCGATTCCTTGAT
CGGCTTTGGTCACTCAGTGCAAACGAATTAGCATTTTCATCTTGGTGTAT
CGCTTTTGACATTCGGTAGTAGAAATACACCATTAGTGCTAGAGGGATGA
AGCCGTCGAGCACGTAATTGACGATTTCTTGAGGTTCAACCATTGGTATC
TGGTCTCTTTCGGTATAGTCGTAGTCACAACTATGGCTATCCTCCTCAGA
ATAATACACCAATTTAATCCGCAGAAAATCAGAAATATTGATCAGAGTTG
GTATAACCCAAATCAAAATACAAGCTAGTCcgtatttctttttattgatt
cgCACAGCCATTGGGTAGGTAATGGAGCGATATCTAGCAAAAGAAATTAA
GGTCAGTGCCCAAGATGCTGTCATTGGAACAACTTTCAGGAAATAAACAC
GGAATATAAGACATGCAAATACCGGGAGTTCCCATGTGTGTTTGGAAAGG
AAATGAAAGGCAATTGGTACACCAATGCAGATGGATAGATCGGCCAAAGC
AAGATTAATGATCAGAAGATGATACGAGCTCATTCGCTTTAATCCTTTct
tcaaattgattttgacgAAGTAAACGATGATAAGCAGATTCCAGAAACCA
CCAATCGCAACCAAACCAGGGAAAATATTAAGAACGTAGTAATTGTCAAT
TTCTTCGGCTACTTCACGAATATTCACTAGAACCTCTGGATCAATTTCAC
CGCTACCACTGGCGCTACCATCAGTGGTGAAATTATCGCTATCGATAGTG
ATATTACCATTGTTCATAGTGAAATTGTGGCTACCATTGgcattcatttt
ctttattgctTTCGAAATTAAAGCAATAAATTACTATCCGACGGTGGAAA
AccaatttaaaaataaagtcGCACTTCTATTCAAGACTCACA Coding sequence (CDS) from alignment at sc0002789:14138..15129 >TCONS_00041295 ID=TCONS_00041295|Name=TCONS_00041295|organism=Clytia hemisphaerica|type=CDS|length=897bp|location=Sequence derived from alignment at sc0002789:14138..15129 (Clytia hemisphaerica)
NNCCATTAGGAAAACATCCAGCATTCTTGCTGTCATGACGCTAAAAGTAA
ACACGTATATAAGCCCGCTAATTGTTCTCAGCGCTGCCCGATTCCTTGAT
CGGCTTTGGTCACTCAGTGCAAACGAATTAGCATTTTCATCTTGGTGTAT
CGCTTTTGACATTCGGTAGTAGAAATACACCATTAGTGCTAGAGGGATGA
AGCCGTCGAGCACGTAATTGACGATTTCTTGAGGTTCAACCATTGGTATC
TGGTCTCTTTCGGTATAGTCGTAGTCACAACTATGGCTATCCTCCTCAGA
ATAATACACCAATTTAATCCGCAGAAAATCAGAAATATTGATCAGAGTTG
GTATAACCCAAATCAAAATACAAGCTAGTCcgtatttctttttattgatt
cgCACAGCCATTGGGTAGGTAATGGAGCGATATCTAGCAAAAGAAATTAA
GGTCAGTGCCCAAGATGCTGTCATTGGAACAACTTTCAGGAAATAAACAC
GGAATATAAGACATGCAAATACCGGGAGTTCCCATGTGTGTTTGGAAAGG
AAATGAAAGGCAATTGGTACACCAATGCAGATGGATAGATCGGCCAAAGC
AAGATTAATGATCAGAAGATGATACGAGCTCATTCGCTTTAATCCTTTct
tcaaattgattttgacgAAGTAAACGATGATAAGCAGATTCCAGAAACCA
CCAATCGCAACCAAACCAGGGAAAATATTAAGAACGTAGTAATTGTCAAT
TTCTTCGGCTACTTCACGAATATTCACTAGAACCTCTGGATCAATTTCAC
CGCTACCACTGGCGCTACCATCAGTGGTGAAATTATCGCTATCGATAGTG
ATATTACCATTGTTCATAGTGAAATTGTGGCTACCATTGgcattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041295-exon-sc0002789-1491911889:14138..15129 | TCONS_00041295-exon-sc0002789-1491911889:14138..15129 | Clytia hemisphaerica | exon |
| TCONS_00041295-exon-sc0002789-1510915933:14138..15129 | TCONS_00041295-exon-sc0002789-1510915933:14138..15129 | Clytia hemisphaerica | exon |
| TCONS_00041295-exon-sc0002789-1575043694:14138..15129 | TCONS_00041295-exon-sc0002789-1575043694:14138..15129 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002789 | supercontig | sc0002789:14138..15129 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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