TCONS_00041292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041292
Unique NameTCONS_00041292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041292 ID=TCONS_00041292|Name=TCONS_00041292|organism=Clytia hemisphaerica|type=transcript|length=227bp
ACCAATAGTTACGTGGACGAAATAGTAATAGCCTGTAAACAAGCTTTTAC
TAATCACCACACACTAATTTAATAGTTCCCTCAGGAGGTTGTctccatac
aaaaaatcatCGAAAGACCAATCTGTGATCAAGACAGTATTTCACATGCA
ACAATTACACCacaatttgattcaaaatttaccaaaagtcagtttcatat
taaaaaattgtctttaaaactgaCTGG
Run BLAST on NCBI

transcript from alignment at sc0002787:16668..17127-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041292 ID=TCONS_00041292|Name=TCONS_00041292|organism=Clytia hemisphaerica|type=transcript|length=460bp|location=Sequence derived from alignment at sc0002787:16668..17127- (Clytia hemisphaerica)
ACCAATAGTTACGTGGACGAAATAGTAATAGCCTGTAAACAAGCTTTTAC
TAATCACCACACACTAATTTAATAGTTCCCTCAGGAGGTTGTCTCCATAC
AAAAAATCATCGAAAGACCAATCTGTGATCAAGACAGTATTTCACATGCA
ACAATAACACACTTTAATTCAAATTTTACCAAAAGTCAGTGTCATATCAA
AATAGTGTCTTTGAAAACTGACTGGTCTATCAATAATTCAAAGCATGAAG
ACAACCACCAATAGTTACGTGGACGAAATAGAATCACCACACACTAATTT
AATAGTTCCCTCAAGAGGCTGTCTCCATACAAAAAATCATTGAAAGACCA
ATCTGTAGTGATCAAGACAATTTTTGACATGCAACAATTACACCACAATT
TGATTCAAAATTTACCAAAAGTCAGTTTCATATTAAAAAATTGTCTTTAA
AACTGACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025282XLOC_025282Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041292-exon-sc0002787-1575043694:16983..17127TCONS_00041292-exon-sc0002787-1575043694:16983..17127Clytia hemisphaericaexon
TCONS_00041292-exon-sc0002787-1575043694:16668..16749TCONS_00041292-exon-sc0002787-1575043694:16668..16749Clytia hemisphaericaexon
TCONS_00041292-exon-sc0002787-1510915933:16983..17127TCONS_00041292-exon-sc0002787-1510915933:16983..17127Clytia hemisphaericaexon
TCONS_00041292-exon-sc0002787-1510915933:16668..16749TCONS_00041292-exon-sc0002787-1510915933:16668..16749Clytia hemisphaericaexon
TCONS_00041292-exon-sc0002787-1491911889:16983..17127TCONS_00041292-exon-sc0002787-1491911889:16983..17127Clytia hemisphaericaexon
TCONS_00041292-exon-sc0002787-1491911889:16668..16749TCONS_00041292-exon-sc0002787-1491911889:16668..16749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002787supercontigsc0002787:16668..17127 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	12.4391	8.49468	7.85803	9.36433	6.78263	9.90964	14.3823	5.80265	17.0866	11.4301	1.17785	3.69761	13.3894	12.9751	6.55905	7.17112	0	0	7.94585	3.67222	6.50655	8.99171
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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