TCONS_00041290 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041290
Unique NameTCONS_00041290
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041290 ID=TCONS_00041290|Name=TCONS_00041290|organism=Clytia hemisphaerica|type=transcript|length=600bp
CACCATCATTACAAGGAACAAAACTGCGATCGCTACTCAAGTTGTGAACG
GAAAACGCGTGTCAGCTGAGTTTGCTTGTGCTACCAAGACCGAGCGACAG
GAAAGACAAAACGTCGACAAGCTAAATATCAGCCAGCTCAAACAAAGAAT
TCAAGGTCGTTTAGAGGTATTAGATGATGAAACACTCAAGTGTTATGAAG
ATCACGTATCTGAAGTGAAAGGAACAACGGTAGAGAAACGTAACGTACTC
GCAGAATTCTGGAAGAAAATAATGCTcgattgaaattttattttgctACA
TTTATAACTAGCTATCGTATTTCTCAATACATGAATATTATTTCGTTTCA
CGAAAGACCGCAACAGTTTTATGAATACATTGGCATTTCAGTTAAGATAG
TAGTTCTTACTTTCTTGGCAATGTCTGCAAATAGTTTTGCGATTTCGTGT
GGTAGAGTATGAGTCTTGTTCTTTTTCTGGCTTCTCTTGGGCTGCTCTAA
AGTGAAATACTCAAATTTAACTTATCTGCCAAGAACCATGACTCGTGACT
ATACAATGAGCGTTGAACCCCAGTTCCACAAGATCTAGAGTTAACACTTT
Run BLAST on NCBI

transcript from alignment at sc0002787:717..1952+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041290 ID=TCONS_00041290|Name=TCONS_00041290|organism=Clytia hemisphaerica|type=transcript|length=1236bp|location=Sequence derived from alignment at sc0002787:717..1952+ (Clytia hemisphaerica)
CACCATCATTACAAGGAACAAAACTGCGATCGCTACTCAAGTTGTGAACG
GAAAACGCGTGTCAGCTGAGTAAGTATTTCTGATGACTGTAATAGTGAGA
TATGTCCCATTATCAGCGCATTTTACTCcggttcttattttcatcattaa
ttAGATTCTTAAATTAATTAAATCACCTTTATTGAATTCAGACCCGTTAA
GCCGGTGACGGAAAATAAAAACTATAAGACCGGCgtaaaaaagggccgat
aaggaaTTCATCGATCTCGTTATTCTTCCTTTTCAACTCTTTAATATAGG
TAAGATCAGGTGGTCTGTAAACAAGATTCTTCTAGGGCATGGTCTTTGGT
AACAATGTCAATCTTCGTTCTCAAAAAACTTACTCGATTGTAGTTTAATC
TGTCTGATTTGTTCTGCAGGTTTGCTTGTGCTACCAAGACCGAGCGACAG
GAAAGACAAAACGTCGACAAGCTAAATATCAGGTAATGATGAAAATAAGG
TATCTTCGATGTTTGCAATAACAGCATACCTTAGTTTACGTCAGACTATC
CTTTTTAGACCTTGTAATCTGTGTTGTACACTATACTGTCGGCGCCCCCC
ACAAATTCAGCCCTAATGAGAAATTGCCGGATGATTTTCTCCCCATTGGA
AATTGAATAcattttttatccccattgagatttagATCGACATCTGCATC
CCCACTTaaggaaaaaattccaccggTGCAAAGAGATATTCATAAGCAGA
CTTCTATTTCGTTATTAGCCAGCTCAAACAAAGAATTCAAGGTCGTTTAG
AGGTATTAGATGATGAAACACTCAAGTGTTATGAAGATCACGTATCTGAA
GTGAAAGGAACAACGGTAGAGAAACGTAACGTACTCGCAGAATTCTGGAA
GAAAATAATGCTcgattgaaattttattttgctACATTTATAACTAGCTA
TCGTATTTCTCAATACATGAATATTATTTCGTTTCACGAAAGACCGCAAC
AGTTTTATGAATACATTGGCATTTCAGTTAAGATAGTAGTTCTTACTTTC
TTGGCAATGTCTGCAAATAGTTTTGCGATTTCGTGTGGTAGAGTATGAGT
CTTGTTCTTTTTCTGGCTTCTCTTGGGCTGCTCTAAAGTGAAATACTCAA
ATTTAACTTATCTGCCAAGAACCATGACTCGTGACTATACAATGAGCGTT
GAACCCCAGTTCCACAAGATCTAGAGTTAACACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025280XLOC_025280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041290-exon-sc0002787-1491911889:717..785TCONS_00041290-exon-sc0002787-1491911889:717..785Clytia hemisphaericaexon
TCONS_00041290-exon-sc0002787-1510915933:717..785TCONS_00041290-exon-sc0002787-1510915933:717..785Clytia hemisphaericaexon
TCONS_00041290-exon-sc0002787-1575043694:717..785TCONS_00041290-exon-sc0002787-1575043694:717..785Clytia hemisphaericaexon
TCONS_00041290-exon-sc0002787-1491911889:1136..1198TCONS_00041290-exon-sc0002787-1491911889:1136..1198Clytia hemisphaericaexon
TCONS_00041290-exon-sc0002787-1510915933:1136..1198TCONS_00041290-exon-sc0002787-1510915933:1136..1198Clytia hemisphaericaexon
TCONS_00041290-exon-sc0002787-1575043694:1136..1198TCONS_00041290-exon-sc0002787-1575043694:1136..1198Clytia hemisphaericaexon
TCONS_00041290-exon-sc0002787-1491911889:1485..1952TCONS_00041290-exon-sc0002787-1491911889:1485..1952Clytia hemisphaericaexon
TCONS_00041290-exon-sc0002787-1510915933:1485..1952TCONS_00041290-exon-sc0002787-1510915933:1485..1952Clytia hemisphaericaexon
TCONS_00041290-exon-sc0002787-1575043694:1485..1952TCONS_00041290-exon-sc0002787-1575043694:1485..1952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002787supercontigsc0002787:717..1952 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.297313	0	0.121504	0.309829	0.244725	0.290077	0.116655	0.218423	0.245015	0.374087	0.113521	0.438335	0.641679	0.959696	0.771847	0.993242	0.86601	1.00583	0.428813	0.10767	0.543983	1.3611	0.665717	0.220277	0.389677	0.260833	0.269459	1.15193	0.116659	0.144929
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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