TCONS_00041286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041286
Unique NameTCONS_00041286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1872

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041286 ID=TCONS_00041286|Name=TCONS_00041286|organism=Clytia hemisphaerica|type=transcript|length=1872bp
TGATCTaaaaagttTACTTCAAAGGATATAAAGGCAGCGCCATTATGCGA
CAAGCCATAGAAGAGACATAGGTTCACACAAAATTTTCCTCGCCTCGAGA
AAAATTTCGTACggcttttttcatgttttggtcacgtgatcgaCGCCTTC
CATTTCTCGAAAAACAAGCCAATCAGAGTTGACGATTTTCCCGCGGCACA
TTTTGATTGGCCGATTTCAGCGTAACGGGTGGCAACATGGTAGCCAAAGA
AGCGATAATTTCATTCAACTTGCTATTTTGGTGGTGGATGGAGGTtttgt
caaactttttcaaGTCTGTGATCTGGGGGATGGAGGGTTCAAGAACCAAC
AACTGACGACCGAGAAAGCTAAGTTCGACCAAAAAAGTTACACGAAATGA
AAGACTTGACCCTGGATTTTAAGGACGACTTGTGCGGTCCTGCAGCAACA
TGTAAATTTATGGCTGGATAGTTGGACTCCTTGACTAATACTTCTCAGCT
GCTTGCTGATTTCTCCATATCCAAGTGTAGAAGATGGAAATATACCTGTT
GTCATGCTGGAATCGTATCAAGAAGACAGAGGCAGGAGAACCTCAGAGGC
AGAAAAAGcgagaaagaaatttttctgcTTAGTTCTTGTTAACTTAAAAT
TATCCATATTTTGTAATAAATCAAGAAGAAATCATTTATTACATTAATAC
ATACAGTTGTCTGTCAAATTACTTTTATGAGAGACTGATTTGGAACTAGT
TGGAACACATTATTTAGTGAAATTCTCCtctaaaaaatcattaaattccC
GGAAATTTATCCCAAGtcccaaatttgaatttctaagGTAAAAACTGAGC
TTTATTCAAAGTTTCCTGATGTTATATGGGTATTGATCATTCCCAGGCAT
GTCCTCTATCCTTCCAATGGAGTTATAAAAGCAAATAATGGCCTAAAGTC
CTAATTATAAGCCTATATTTCCGTTGTAAACAAGTccgaaaatttggaaa
aattacctTCGGCGTCTTTGATCCCGAtttctaaaaagagaaaaagagaa
agtgTTTATGAAGTTATATTTTTCTTAAAGCTCTATCCTTCCCTGAAAAA
GTGTTTTTTACAGAATTAAAAAAGCTTCTTTAGTTGTTGAAATATTTGGG
ATTTTGTATGGGAAGGTAAAATTTTTTCGCAAATCTGACGTCAATTCAGT
TTCTCCGCGTTGGAACAGCCGTGCGAATCTTTAGACAACAAGTGTCAAGA
tcctttatcttttttttgctgatgacaaCGAGGATGATGACATCTTTGAA
GACTTTTATTGTAATGACCCACAAGAAAATGATGATAATCCGATGAAAGA
TTTCCAGGAGCCCTTATACAATGGTTCAACAACTAATTTGGGTTCTGCGT
TAGTCATGATAATGGTTTTTTGtcagaaattcaaactctctgGCTCTTGT
TTGTGTATGCTTATTAAGATGTTGAGCTTACTTCTTCCACCAGGTAATAT
TTTTCCACGCTCACTGTATCACTTCAAGAAGATTTTCTCATCCATATCAC
CAAAAGTTGTTATTcatcatttttgtaaaatctgtATGCTGAAAGTGGAA
ACAGGTTGCATGCACTGTCCTAATCTTGAATGCCCCCAACATACTTCTGA
GTCTATGGAAGTTGCGTATTTTGTGCAGTTTGATCTTCAACAACAACTCA
AAAGTATTTTTAATCGGAATGGTATGTTGGATAAACTACACCACCGTTTT
AACCGTACTGCCAAATCTACAAGAGACATTTATGATGGCACCCTTTACAA
GGAACAATCTGTTGCAGGCGGCTTTTTGGATAATCCTCATAACATCTCTC
TCATTCTTAACACAGATGGCAT
Run BLAST on NCBI

protein sequence of TCONS_00041286-protein

>TCONS_00041286-protein ID=TCONS_00041286-protein|Name=TCONS_00041286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MKDFQEPLYNGSTTNLGSALVMIMVFCQKFKLSGSCLCMLIKMLSLLLPP
GNIFPRSLYHFKKIFSSISPKVVIHHFCKICMLKVETGCMHCPNLECPQH
TSESMEVAYFVQFDLQQQLKSIFNRNGMLDKLHHRFNRTAKSTRDIYDGT
LYKEQSVAGGFLDNPHNISLILNTDG
Run BLAST on NCBI

transcript from alignment at sc0002785:3797..7131+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041286 ID=TCONS_00041286|Name=TCONS_00041286|organism=Clytia hemisphaerica|type=transcript|length=3335bp|location=Sequence derived from alignment at sc0002785:3797..7131+ (Clytia hemisphaerica)
TGATCTGTAGGTCTAGCTCTGAAGATCATTttaaaattctgtaaaaagcc
TCTTGAAGCCGAAAGATAGTTCTTTCCGAATCATTTTTGAtcttcatctt
tgttttgattcgatCACGCAATCTCAAGTTATAAGATTTCAAAGGTCTGC
GAAATCGTAACATCCGGTCAACTTTGAAACCTTGTCGCAAACCGGCTTTT
CAACTTAAGAccctgaaattttcaccagtcCCTCGCAAAATATAAGGTCG
TTACACAGACTATAATTTACGGGCCCAGGCCTGCCCAGTTTAGCTTGGAC
TACGAAAACTCGTGTTTAATGCCCTGTGGAAGCTTATGAAGACCATGAAT
CGAAAGCTGAatcctttttctttcagaaaaagttTACTTCAAAGGATATA
AAGGCAGCGCCATTATGCGACAAGCCATAGAAGAGACATAGGTTCACACA
AAATTTTCCTCGCCTCGAGAAAAATTTCGTACggcttttttcatgttttg
gtcacgtgatcgaCGCCTTCCATTTCTCGAAAAACAAGCCAATCAGAGTT
GACGATTTTCCCGCGGCACATTTTGATTGGCCGATTTCAGCGTAACGGGT
GGCAACATGGTAGCCAAAGAAGCGATAATTTCATTCAACTTGCTATTTTG
GTGGTGGATGGAGGTtttgtcaaactttttcaaGTTAAGTGAATCGATct
aatttttaaacttcaaaaagctttttagcaatttgattggcttgttttta
aTGTTTCTCTTGGATAGAACCAGGGGTTGAGTGACTTCAAATCTCTAAGA
TAGCCCTTCAAACAATCTTACTTCTTCCCAAATATTTTCTAGAATTTCTG
TTGCATAATCACCTCATCAGCCTCTAATATTCTGACTTGTGGTAATAGAT
ACTAGATGAGAATTTCATAGCTAGATTTTGTTTTCCTTcaatatcttttc
tttcttctgTTTTCTTCAGGTCTGTGATCTGGGGGATGGAGGGTTCAAGA
ACCAACAACTGACGACCGAGAAAGCTAAGTTCGACCAAAAAAGTTACACG
AAATGAAAGACTTGACCCTGGATTTTAAGGTAGGActtatttgaaatatt
cttaatagAATTAAGGTACTATTAGTTCTTTTCAAGGCTGAGGGAAATGG
TGATTGAGTATGAACTGATGAAAATAGACatagtttttttgttgtttttt
atttaaaatgttttcttcattttgtagGACGACTTGTGCGGTCCTGCAGC
AACATGTAAATTTATGGCTGGATAGTTGGACTCCTTGACTAATACTTCTC
AGCTGCTTGCTGATTTCTCCATATCCAAGTGTAGAAGATGGAAATATACC
TGTTGTCATGCTGGAATCGTATCAAGAAGACAGAGGCAGGAGAACCTCAG
AGGCAGAAAAAGcgagaaagaaatttttctgcTTAGTTCTTGTTAACTTA
AAATTATCCATATTTTGTAATAAATCAAGAAGAAATCATTTATTACATTA
ATACATACAGTTGTCTGTCAAATTACTTTTATGAGAGACTGATTTGGAAC
TAGTTGGAACACATTATTTAGTGAAATTCTCCtctaaaaaatcattaaat
tccCGGAAATTTATCCCAAGtcccaaatttgaatttctaagGTAAAAACT
GAGCTTTATTCAAAGTTTCCTGATGTTATATGGGTATTGATCATTCCCAG
GCATGTCCTCTATCCTTCCAATGGAGTTATAAAAGCAAATAATGGCCTAA
AGTCCTAATTATAAGCCTATATTTCCGTTGTAAACAAGTccgaaaatttg
gaaaaattacctTCGGCGTCTTTGATCCCGAtttctaaaaagagaaaaag
agaaagtgTTTATGAAGTTATATTTTTCTTAAAGCTCTATCCTTCCCTGA
AAAAGTGTTTTTTACAGAATTAAAAAAGCTTCTTTAGTTGTTGAAATATT
TGGGATTTTGTATGGGAAGGTAAAATTTTTTCGCAAATCTGACGTCAATT
CAGTTTCTCCGCGTTGGAACAGCCGTGCGAATCTTTAGACAACAAGTGTC
AAGAtcctttatcttttttttgctgatgacaaCGAGGATGATGACATCTT
TGAAGACTTTTATTGTAATGGTAAGCTAATTACTTTTTGCTGCTTCAAGC
TGAATTACATTGTCTGTTTGTATGGACACACCTCAGCCTCATCATAGTCA
TTTGGGAGAATGCAacggtctattgaataacaaactaCTCCAGCCAGTAC
AGACAGGATAAATTGTGGTTGTAATCAATTATATGACattatcaattaaa
aaattCTGCTGGAGTAATAGTTATTCAAAAGAATGTCGCATTCTCCCcaa
acaaatattaaaaatgaataacacctactctcgggtacctaatagcagGG
AGGATTTTTCCAAGCCCCCTGCTTACTCCAAAACccctggctattaggta
cccaagtagtttttttattttcaccttaTGTAATTTGTCACTTTGAAGTT
TTGCCCAGATCCATCCAAATACTTGTTggaatataaacaaataaaacatt
ttagaAATGTTACGTCTGTCCAGGAAAAATTGATCAATCTTTGGTTTCAT
AAGACAAAATCCATTGTAAACTAGGAACACCCGACATTGACCACcaattt
catttgattttttcagaTAATGACAATAACGACATTCAAGAATGTTGtgt
aaaatgttttatttgtttatattccAACAAGTTCATCCAGACTTGGCATT
CATATGAAATTTGATCATTTCTTCTACAGACCCACAAGAAAATGATGATA
ATCCGATGAAAGATTTCCAGGAGCCCTTATACAATGGTTCAACAACTAAT
TTGGGTTCTGCGTTAGTCATGATAATGGTTTTTTGtcagaaattcaaact
ctctgGCTCTTGTTTGTGTATGCTTATTAAGATGTTGAGCTTACTTCTTC
CACCAGGTAATATTTTTCCACGCTCACTGTATCACTTCAAGAAGATTTTC
TCATCCATATCACCAAAAGTTGTTATTcatcatttttgtaaaatctgtAT
GCTGAAAGTGGAAACAGGTTGCATGCACTGTCCTAATCTTGAATGCCCCC
AACATACTTCTGAGTCTATGGAAGTTGCGTATTTTGTGCAGTTTGATCTT
CAACAACAACTCAAAAGTATTTTTAATCGGAATGGTATGTTGGATAAACT
ACACCACCGTTTTAACCGTACTGCCAAATCTACAAGAGACATTTATGATG
GCACCCTTTACAAGGAACAATCTGTTGCAGGCGGCTTTTTGGATAATCCT
CATAACATCTCTCTCATTCTTAACACAGATGGCAT

Coding sequence (CDS) from alignment at sc0002785:3797..7131+

>TCONS_00041286 ID=TCONS_00041286|Name=TCONS_00041286|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0002785:3797..7131+ (Clytia hemisphaerica)
ATGAAAGATTTCCAGGAGCCCTTATACAATGGTTCAACAACTAATTTGGG
TTCTGCGTTAGTCATGATAATGGTTTTTTGtcagaaattcaaactctctg
GCTCTTGTTTGTGTATGCTTATTAAGATGTTGAGCTTACTTCTTCCACCA
GGTAATATTTTTCCACGCTCACTGTATCACTTCAAGAAGATTTTCTCATC
CATATCACCAAAAGTTGTTATTcatcatttttgtaaaatctgtATGCTGA
AAGTGGAAACAGGTTGCATGCACTGTCCTAATCTTGAATGCCCCCAACAT
ACTTCTGAGTCTATGGAAGTTGCGTATTTTGTGCAGTTTGATCTTCAACA
ACAACTCAAAAGTATTTTTAATCGGAATGGTATGTTGGATAAACTACACC
ACCGTTTTAACCGTACTGCCAAATCTACAAGAGACATTTATGATGGCACC
CTTTACAAGGAACAATCTGTTGCAGGCGGCTTTTTGGATAATCCTCATAA
CATCTCTCTCATTCTTAACACAGATGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025276XLOC_025276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041286-exon-sc0002785-1491911889:3797..3802TCONS_00041286-exon-sc0002785-1491911889:3797..3802Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1510915933:3797..3802TCONS_00041286-exon-sc0002785-1510915933:3797..3802Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1575043694:3797..3802TCONS_00041286-exon-sc0002785-1575043694:3797..3802Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1491911889:4173..4479TCONS_00041286-exon-sc0002785-1491911889:4173..4479Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1510915933:4173..4479TCONS_00041286-exon-sc0002785-1510915933:4173..4479Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1575043694:4173..4479TCONS_00041286-exon-sc0002785-1575043694:4173..4479Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1491911889:4766..4875TCONS_00041286-exon-sc0002785-1491911889:4766..4875Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1510915933:4766..4875TCONS_00041286-exon-sc0002785-1510915933:4766..4875Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1575043694:4766..4875TCONS_00041286-exon-sc0002785-1575043694:4766..4875Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1491911889:5024..5916TCONS_00041286-exon-sc0002785-1491911889:5024..5916Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1510915933:5024..5916TCONS_00041286-exon-sc0002785-1510915933:5024..5916Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1575043694:5024..5916TCONS_00041286-exon-sc0002785-1575043694:5024..5916Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1491911889:6576..7131TCONS_00041286-exon-sc0002785-1491911889:6576..7131Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1510915933:6576..7131TCONS_00041286-exon-sc0002785-1510915933:6576..7131Clytia hemisphaericaexon
TCONS_00041286-exon-sc0002785-1575043694:6576..7131TCONS_00041286-exon-sc0002785-1575043694:6576..7131Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041286-proteinTCONS_00041286-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002785supercontigsc0002785:3797..7131 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66337	1.01951	0.633145	1.21721	0.932608	1.50306	2.41735	2.1994	5.24815	4.67621	3.22358	6.3399	5.52843	5.31117	3.66339	3.44423	4.43647	3.7595	3.60212	4.59104	1.68856	2.85855	3.36811	0.678527	1.20989	0.2008	3.41028	1.80931	6.59084	4.72141
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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