TCONS_00041282 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00041282
Unique Name	TCONS_00041282
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1420

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002784:780..9554+

transcript sequence

>TCONS_00041282 ID=TCONS_00041282|Name=TCONS_00041282|organism=Clytia hemisphaerica|type=transcript|length=1420bp
GAAGATCAGGGTGAAGACGATGATGATCAGGCAGGCGTTGTTACTGGTGT
TCTCTTTGGAATAATCATTTTCATTCTCTTGGTTTTGTTAATCATATGCT
GCTTGCACAAAAAcaAGAAAATTGATGCAAGTATCATGGTCAATGAAATA
CCTGTTAAAAAAGCTCATGAAACGAACGCCAATATGGAATACTTCGGAAA
GGGAGTTGAAAAGCAACCTAATCATTACCACAATCCAGTTTACTTTTTCA
GTGATCCACCGAGGAATTTGAGCCTTGTACAAAATGCGGACAATAatatt
ttcgggaaaaaaaCAAGCACCGTTATTGAGAATGAGCATTACTATGAAGA
TCCTGACAAATATCGAAAAGACGGACCACGAATTGTAGATATTACAGAAC
CCCCTCCGACACCCACAAATCCATCATCACCAGGAAATGAATTGACAGTA
CCAGGGCTTGGAGGTCTGAGTATTGAAGAAGACATTTACGCAACGCCAAA
TAAAAGCCCTGCTCTTCCCTTAAAGAAAGCCTGCTTGAAAAAGTCGAACA
GCAATGCGTCATCTTTAGACGGATGGAGTGAAGACGAGTTTGATGACCAC
GAGGAAGATCTTGAAgcagaagaagaaaagaaagatgGATATCTCCAAGC
TGAAGACgaaaattataattatttaGGTGACGAAGATCTGGAAGTATCTA
GCCAAGAACCCTTAGAGGACTGCAAACAACCAACCAACATTCCACCTTCA
AAGAAACCGTCTACTGCCTCCAACGATTACAGAGAACTTGAGCTACCTCC
TGTTCCTCCACAGACCCAAGGACCACCCCCAGGTAGTAAGCGACCATCGA
TAAGTGGGCTACCTCCCATCTCAGATCAAGCCCCTTCCAAATCTAGGGTG
AGCAAGAGACCCCCAATACCAGGCAACTGTCCAAATATACCAGCAGGCGG
ACAACGACCTTCCTTAGGTAGCCTACCACGCCAACAAATGTGGATGGTGA
TATTAATAGAAGTTTGAAACAGGTGTGTATCTGTcgttaaagattttatt
aagaaataatttgaaataagacCGATCAGAGTAACAAATCAAACatataa
ttatattttcaaagttATTCCGCCTGTACGATTCTCAATCATTTTGAGTT
TTTATCGTTCTAGTCTGGTGCTGAAGCCGAGTAAAAAGAACAGTTATCTT
ATTAACTAAAGACAGATAAAACCCCTTTAAAGGTCCCAGGACGGCCATTA
CATTAAAGGGGTGAAtacgtactagttatcgcatgacttcgagtgcaata
cgagaaatattttacgagtacctagatttttccgtaatatttttccgagc
ctttaggcgaggaaaaatatcggtaaaatctcggaacgagtaaaatatcg
agtattgcacgagaagtcat

Run BLAST on NCBI

transcript from alignment at sc0002784:780..9554+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00041282 ID=TCONS_00041282|Name=TCONS_00041282|organism=Clytia hemisphaerica|type=transcript|length=8775bp|location=Sequence derived from alignment at sc0002784:780..9554+ (Clytia hemisphaerica)
GAAGATCAGGGTGAAGACGATGATGATCAGGCAGGCGTTGTTACTGGTGT
TCTCTTTGGAATAATCATTTTCATTCTCTTGGTTTTGTTAATCATATGCT
GCTTGCACAAAAAGTAAGTTTGCTATTCGATACCGTACTAACCTACAACA
ATCCAAAAGGTCCCTCAATCAAATCGATCTGATTGGtcttaatttcaaaa
ttatggTGTAATTGAGCTAAATAAACCAATCAATGCTCAGAAAAAGTGTT
TGATTATTGATGGACTTTTGGATTACTATAGGTAAGTACGGTATTTCAAG
TATACTTTCGGGGTGGGGGCATGGGTGTGGGATATTATTCGGGACACTAG
AGAAAGATAAGAGAAATGAAGAAACCTTTAGGTATAAAAGAGGTACCGTT
ACCTATCGCAAATACTTGGTATCAAGTTTTACCTAAGCACCCTTGTATGG
GAATTATTTTCACTGGTTTGATTTCCTACCGGATATGAGAGAAAGGGGAT
TCTTCCGgtaaattataaaaaagctCAATTATTCTTGCCTTCTTactctt
ttttattcttttagcaAGAAAATTGATGCAAGTATCATGGTCAATGAAAT
ACCTGTTAAAAAAGCTCATGAAACGAACGCCAATATGGAATACTTCGGAA
AGGTAAGTTTTTGAGTTTCTGTTTTTTCCAGTTTGGTATGAAACATTGCG
GAAAGGGTTCTTTAGAGGAAGATATGATCGAATAGCCCCAGTGAAAACTT
TTTCCCATAGCTGGGAATGAAAGCttctatcaaaatcccaatgggaacaG
AAATTTTATTGTGTCCTGCTCAAAGAATCCACTGGGGATAACTTTTACCC
TAAATCTTAAATGGGGATGAAACCGGGGGGGGGGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNgcccgggggggtactaggtttgcgaggt
gacgggtatgtccgagccgaaaatcgaaaatcgaccctttgagagacaaa
atgttggtgattttgggaccctttgagagactttttcctaaattttggtc
cattttttccaaattttggtttgattttcaccaaattttggttaaaattc
ttggaaatcgtgaccctttaagagagaaatttttgatttttgtgattttg
ggaccctttcagagactaacttttgaatatGTACccttttgagagacttt
tgaggaatgagaaaaggtacccttatggctcgcacatacccggcacccat
tttgcctaagcaccccccccccgggggatgaaatcaaagtcaactttcaa
aaattggcTGACGACATAATAGTAGCAAAAAGTTACTTGATAAAGCATGC
CCACCACAAAATAGATTATGAAAATATTAGTAGGAAAGTGACCCGGAGAT
AATTCTTGAGTCAGTAGGGGGTAAAATTAAAAGCTGAATAGCTATGGAGA
ATTTCGATGTTACCTTTAAATGGGTATAAGAGTTCAGTGTAGCTTTCCAT
TAGgcattttaaggtatttttctcaCAAGGGACGCAAATAGATTtgattt
tccattgttttgttaTACATGGGTGTATTCTCATTTATTTTGACTTCAGG
GAGTTGAAAAGCAACCTAATCATTACCACAATCCAGTTTACTTTTTCAGt
aagattgttttatttttccccATACTGTTTCTCCATTAcatttcttagtg
agttccccACCTAACTACGTTAAAAAGGCCAGTACACGCTAACTATACAC
GCTAACTATACCGGCtaagttcaatttttttatctctttGTCAGACCAAT
TTAGTACCTCCTTTATTTATGGTCTTAACATactgattgtttttatttta
tgatttctaGGTGATCCACCGAGGAATTTGAGCCTTGTACAAAATGCGGA
CAATAatattttcgggaaaaaaaCAAGCACCGTTATTGAGAATGAGCATT
ACTATGAAGATGTAAGTATTTTATGACCGAAAATTGTTGAGAATTGAGAA
ACGAGTGCAGTCTACACACGTTATGTATGCGAATATATGATGGTATAAAA
ATGAGGATGAATTTCagccaaaacctaagaaaaaACCTCAGATTTAAAAA
GAACTTCTTACTTCATACCCGATTTAAAGGGGTTTGTaagggttcgaaat
accgttttccctttttggctgaatcccggaatcccaaaaattgaaaaaaa
ataacaccGTCACGCCGGTTTGTAGAGGTATACTGGAATATAGGCTGGAG
TCGTATATATTGCGTGTAGTATAGGCGTtttatgataatacgattattgt
tacgggatttagttcgtataaacgactggaagaaaccggtgttccggcct
tatagatacccggctagctacgcagaaacttgggtagcgagaaaacaatt
tatcaagcaacaacaaactctcaaaacaaaatcaagtcaaataaaaaact
tttaacacacaaatccaccaacattttttttcgagaaTTTTCTTTCAGCG
GGAAAAAGTTATAATTGCACCGTGAGTGACCCGGAGATAATTCTTGAGTC
AGTAGGGGGTAAAATTAAAAGCTGAATAGCTATGGAGAATTTCAATGTTA
CCTTTAAATGGGTAAAAGATTTCAGTGTAGCTTTCCATTAGgcattttaa
ggtatttttctcaCAAGGGACGCAAATAGATTtgattttctattgttttg
ttaTACATGGGTGTATTCTCATTTATTTTGACTTCAGGGAGTTGAAAAGC
AACCTAATCATTACCACAATCCAGTTTACTTTTTCAGtaagattgtttta
tttttccccATACTGTTTCTCCATTAcatttcttagtgagttccccACCT
AACTACGTTAAAAAGGCCAGTAcacgccaatttttttatctctttGTCAG
ACCAATTTAGTACCTCCTTTATTTATGGTCTTAACATactgattgttttt
attttatgatttctaGGTGATCCACCGAGGAATTTGAGCCTTGTACAAAA
TGCGGACAATAatattttcgggaaaaaaaCAAGCACCGTTATTGAGAATG
AGCATTACTATGAAGATGTAAGTATTTTATGACCGAAAATTGTTGAGAAT
TGAGAAACGAGTGCAGTCTACACACGTTATGTATGCGAATATATGATGGT
ATAAAAATGAGGATGAATTTCagccaaaacctaagaaaaaACCTCAGATT
TAAAAAGAACTTCTTACTTCATACCCGATTTAAAGGGGTTTGTaagggtt
cgaaataccgttttccctttttggctgaatcccggaatcccaaaaattga
aaaaaaataacaccGTCACGCCGGTTTGTAGAGGCATACTGAAATATAGG
CTGGAGTCGTATATATTGCGTGTAGTATAGGCGTTTTAtgatgataatac
gattattgttacgggatttagttcgtataaacgactggaagaaaccggtg
ttccggccttatagataccctggctagctacgcagaaacttgggtagcga
gaaaacaatttatcaagcaacaacaaactctcaaaacaaaatcaagtcaa
ataaaaaacttttaacacacaaatccaccaacattttttttcgagaaTTT
TCTTTCAGCGGGAAAAAGTTATAATTGCAagattgacacttttctttgtt
tgaagttagtgcacaaaggtttttAGACTGCTGAAATTTTTCCCTCTATT
ACTTTTTGccttatttctactatgtcggGATTAGTcgtctacaatcagtg
acaaaatacatggcacaaaagggaaatccggtgaaagtttgaaaccacaa
tcgatttgtaagtgctctaaagtaggttcgaaagTTAGAGtcttaactct
gagttttaacgctagacttaagacttaagaccttacGATCTGAggtccaa
aagttcaaaaatgatcCAGTAGGgattgaaatatagcctagaaactaata
aatccctcccagatcgaaataattgataaaattaAGATGAAGACCTGaga
ttgacattctcgctcgaacttcaattttcaaaaaaatggtgaaTTAGCCA
AAAGtaccaatatgttatggcactgattgtagccTGCTAGACTAACTGGA
ATACGGACAAAAGTAAGGCTAATCACCTTCACCGTGTGATTTTAAAATAC
AGTTTTCCTAAATCAGTTCATTTATAACAGTTCTTTAAAGCTCAGTTGAT
TAGCAAGATTACAGCCTACAACATAATACATATTTCAAACAAAGCCCAGG
GTGTGATACGGGAGTTGAATCCCCAGCTAAGGGCGAATATCCCTTTCTAA
CATAATGCACTAAATCCAAACCGAAAAAGTTGCCCATTCGAGTCAACTCT
AGATTAACTATTCTTATTTCCTTTTTAGCCTGACAAATATCGAAAAGACG
GACCACGAATTGTAGATATTACAGAACCCCCTCCGACACCCACAAATCCA
TCATCACCAGGAAATGAATTGACAGTACCAGGGCTTGGAGGTCTGAGTAT
TGAAGAAGACATTTACGCAACGCCAAATAAAAGCCCTGCTCTTCCCTTAA
AGGTTGGGTTGAACGCTTAATTTGTCTCTGTTTCATGTACGCCAGTACTT
GTTTCGATTATTATTTTTACCTCAGTTTTGTTTTGCCAGTTTTACCAAGT
GACCGTGAAGAAGTTTTCAGTATTCGTTGTTTATTGAGAATTGGAAATAA
CAATTTTCGTATGGTTTTCGAATCTTACCGTGAGGTACATGATAATTTTC
TAATGTACACGGTAAATCTATGCAGGCGCTTGAAAATTCATTGTCTGTAA
GGATAATAAGTCAATTATATCAATAACTTCTTGTGGAAACAAGATAAAAT
AGACCTTTCCAATgaacaaagtttgaaaatcagcCTAAAACCCCTAAAAG
GCCTGATAATAAGAACCTTGTTTTACCTAGCTAGTCGCCCCCGgtctatt
tttttctaaaatattttcttgtctaGCATCGTATGTAATCAATTAGCTTT
GAGGCAATCTGCCATGGTTCACCAAATAAATAAGTTCTTTTGGTCTAAAT
ATTTGTTTGAAAATACGGAGCACATTTGAAAACAgacctttttttgaatt
taaccATTTCTGTTTTTACTCCCATGGCCATTATAAAATCCCAACAGGGA
GATATGAAGTAAGTGGGAGAATTTCCATGGGGTCAACTTATCTGACTGGG
AATCGAGACTCGAAAAGTGATTAAAACTCAAACCACTAAACAGCTCTTCT
TTGTGGTCCGATGAGAAGGTTTTAACCGGTGATACCCCAACCGACACAAA
ACGTCTGAACAATGTCCAGCGAACACCCCTAACGTCCGAATAACGTTTTa
agaacgttaaaacaacgttgagTGCCAGCTGGGACCCAGGGAGGACTCGA
TTCAATAACGATCATACGTGTCGTATATTTATATTCTTGTATTATTGTAT
TATAGCTAACACGGCGTATTATTATATTACGTATCTATTACATTTGAAAG
ATAGTATATTCAGTCGGTAGCATAACTTCATAGTGTACGGTCATATAAAA
CCACATGGTCCACCGAACCGGATGTTAGAAATACATGAAATTTGAGAagt
tatgtatttgtttttctttaattagTTTTGTGAAAAGCGTGTTTTCACTG
AAGAATTTATTTGTTTGAACTCAGGTGaagttcaatgttttgatttttta
taagtCGGTAGCATAACTTCATAGTGTACGGTCATATAAAACCACAATAC
GCGCAGCCCAAAACTAAGCCTTTGAAATTGGTCCCTCACAATGTAgagaa
aatttgggaaaacttaggtgaaaaatcaacccttacggtgcattttcttg
aaagtttCGACCATTTCCAGGCAAAATGTGGCCAAGTTTTTCTTAGAGTA
AAATTCTTTTGATTACGACCCTTTTTGCACTTTGTGAAGCTCGGAAAATA
TAGGGCCACACgaatggtaggtcatttaccttgagtgagCCACTCCCCAA
ACCCTGGGAGCGAGAACATAATTTTCAATAGagaatattttggcctttat
aatagaattttgttattctgttgttttttaaaatgtttcttgatccaatg
acaattttttttacatgGTCATGACATAAAAGATGTTACTTTTAAAGCCA
ATCTGACATTATGTTTTCCGAGGTCTGAATCGCTTTTTCAAAAAACGCTG
AACGCATAGAGATTGCAGTCATTCCACAGCTCCATTGAAAACGCAGACAA
TTCATTCCAATTTTTAATCGACACCTTGAAGTCGAAACATTGTAAACTCT
CCGGTCattcaaattttatattataGTGAAGACATTGCAGTTTTGAATCG
GCCAAATAAGTTTACGTCACGCgctatcttttgttttgatgattggttga
ataaCTACAATCTTTATGCAAGCTCAGCGTTTTTTGAAGGATTTCAGCGA
TTCAGACCTCGGAAAACATTAAATGTCAGATTAGCTTTAATCTGGTCATA
GTGAATTTCTAATATTTGacacgtacaaaatataaatttctacttgatgt
agcacaccaaactatgacatgttatacaattttacaattaccctggagtc
tgaaaatttaagaatcgcaataaaataatttgacgaggaagaaaatgaag
acttttgcgaagaagagtatttcaattttgaagggcttattttcggcgaa
gaaaaaacattttgaatttttttttgcggtaaatggtgtatcttttaccg
aactaaaactgaaaatagtgcatttcatcccaatttttcatagaaaaaca
gccataacttttgatgcattaaaaaaaattttcgaaaatttaaaacagtt
caattctttgcggacagtttcaaaaaaaaacgaaacaaaaaagCTAATTA
CCCATAAAAACTtcgcactttttataaaagaaggtaatgcaacatattat
taacgtctttttaaagttcatagcgTCATTTTCACAATGAAATTCTTagt
tactcttaagggatttgatcaAACAACAATACATCTTTTTTTCcattctt
tttttcgcaccgaaagacaataaaaaaaagtgtaaaaaaaggattggatc
gagtttagggtggtaaaaaatgcccgcgcggcaattggcagctacggtgg
aaaaggtgtatttataaaggcaatttctTGTCAAATGTGTTAAAAAACCT
AAATggtaacttttatgttcaaatactgaaatcaattttttcgACTATTA
AATTGAcaaataccgtgagatcgggtaacgtgcctcagtggaggctaact
tgcatagccatcaaaggACTGACCagtcaaagcagcaaaatttcaaaaca
aatgaactacgcagctctgctcgcagctctagtctactatttttgttttt
atttaactttgtattttaatgaccagccaggtcattcatttgagggttat
gcatgttagcctccaatgatgcaagttacccgatctcgtGGTATTCATTC
TGAAcgaaaataaaaagtcaagTCACAATAGACtcacaaaaatattaaca
aaatattttaaattttaatctAATTTCTTTAGAAAGCCTGCTTGAAAAAG
TCGAACAGCAATGCGTCATCTTTAGACGGATGGAGTGAAGACGAGTTTGA
TGACCACGAGGAAGATCTTGAAgcagaagaagaaaagaaagatgGATATC
TCCAAGCTGAAGACgaaaattataattatttaGGTTAGTGCTTATATGTT
AAAACTCAATATGGGTAGAAAAAGGGTGGAAAAGTGAGCCCTGAATGCTC
TTCTCGATCAACTGAAATAAAGACTTTGGAGCATCTCTTATTCTTTCTTC
ATCAAAAATGTTTCCAAGTGCAATACTAGtatgataaaaattattaatta
AGTATTGATGATGATAATTTATTCTTTTTAGGTGACGAAGATCTGGAAGT
ATCTAGCCAAGAACCCTTAGAGGACTGCAAACAACCAACCAACATTCCAC
CTTCAAAGAAACCGTCTACTGCCTCCAACGATTACAGAGAACTTGAGCTA
CCTCCTGTTCCTCCACAGACCCAAGGACCACCCCCAGGTAGTAAGCGACC
ATCGATAAGTGGGCTACCTCCCATCTCAGATCAAGCCCCTTCCAAATCTA
GGGTGAGCAAGAGACCCCCAATACCAGGCAACTGTCCAAATATACCAGCA
GGCGGACAACGACCTTCCTTAGGTAGCCTACCACGCCAACAAATGTGGAT
GGTGATATTAATAGAAGTTTGAAACAGGTGTGTATCTGTcgttaaagatt
ttattaagaaataatttgaaataagacCGATCAGAGTAACAAATCAAACa
tataattatattttcaaagttATTCCGCCTGTACGATTCTCAATCATTTT
GAGTTTTTATCGTTCTAGTCTGGTGCTGAAGCCGAGTAAAAAGAACAGTT
ATCTTATTAACTAAAGACAGATAAAACCCCTTTAAAGGTCCCAGGACGGC
CATTACATTAAAGGGGTGAAtacgtactagttatcgcatgacttcgagtg
caatacgagaaatattttacgagtacctagatttttccgtaatatttttc
cgagcctttaggcgaggaaaaatatcggtaaaatctcggaacgagtaaaa
tatcgagtattgcacgagaagtcat

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_025274	XLOC_025274	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002784	supercontig	sc0002784:780..9554 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0323401	0.0346136	0.0569341	0.0200811	0.0790152	0.0157143	0.0190212	0.0545714	0.0391447	0.0306955	0.016395	0.0207338	2.53277	2.02056	0.0173449	0.0199434	0.0227164	0.0515133	10.493	11.8384	0.0850117	0.209413	0.0194222	0.0353504	0.0316477	0.072524	0.0243568	0.0249044	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00041282 vs. Swiss-Prot (Human)

BLAST of TCONS_00041282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00041282 (transcript) - C. hemisphaerica