TCONS_00041269 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041269
Unique NameTCONS_00041269
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041269 ID=TCONS_00041269|Name=TCONS_00041269|organism=Clytia hemisphaerica|type=transcript|length=271bp
ATTCCGGACTACTTCCAGTGTTTCGGAGCACAATTTTCGGTGAATGGCGG
TCTGCACCAGAACTCTGGAACGTTCCGGTGCACTTTCGCTAACTGCGCAC
GCacatattttaaaaaaatcagcGGACTCATGGTAGtttcaatattttga
ccaaTGATGCTTTCAAATATAGCtaatgtgacaaattcaatttcattggc
tgaaccatcatcctcaaagttttttatttgaccaaAGTGTCCATAACCtg
gggacaaatattttttgtaac
Run BLAST on NCBI

transcript from alignment at sc0002780:11382..11652

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041269 ID=TCONS_00041269|Name=TCONS_00041269|organism=Clytia hemisphaerica|type=transcript|length=271bp|location=Sequence derived from alignment at sc0002780:11382..11652 (Clytia hemisphaerica)
gttacaaaaaatatttgtccccaGGTTATGGACACTttggtcaaataaaa
aactttgaggatgatggttcagccaatgaaattgaatttgtcacattaGC
TATATTTGAAAGCATCAttggtcaaaatattgaaaCTACCATGAGTCCgc
tgatttttttaaaatatgtGCGTGCGCAGTTAGCGAAAGTGCACCGGAAC
GTTCCAGAGTTCTGGTGCAGACCGCCATTCACCGAAAATTGTGCTCCGAA
ACACTGGAAGTAGTCCGGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025267XLOC_025267Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041269-exon-sc0002780-1491911889:11382..11652TCONS_00041269-exon-sc0002780-1491911889:11382..11652Clytia hemisphaericaexon
TCONS_00041269-exon-sc0002780-1510915933:11382..11652TCONS_00041269-exon-sc0002780-1510915933:11382..11652Clytia hemisphaericaexon
TCONS_00041269-exon-sc0002780-1575043694:11382..11652TCONS_00041269-exon-sc0002780-1575043694:11382..11652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002780supercontigsc0002780:11382..11652 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.63464	1.26531	4.95165	0.753519	2.97721	0.718374	2.69013	0.941713	2.91616	0.566099	2.23279	1.48646	3.85925	1.26913	1.02148	2.51676	2.14966	4.7518	0.621551	2.16096	1.58106	1.92199	0.582456	1.19983	4.28329	2.29851	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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