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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041252 ID=TCONS_00041252|Name=TCONS_00041252|organism=Clytia hemisphaerica|type=transcript|length=576bp
NNTACAGAAGTTTTGGAGAAAATTGATGATGCCCTTGAAGCTATCGAAAC
AACGGACGTGGAAGGAATAACAACTGCTTTAAAGAAAGAGAGATTTTGGG
AATTTGAGCAATCTTCCGAAAGCGTCTCCGTTGCTGGtaagataatgaaa
ttttcgcACTTTTgggaaaaagatttgaaagcATCAAAATTCGCCCTGGG
TGTCGTACGTGAAGGCTATAAAATACCCTTTGAATCAAACCCACCACCTT
TTTACGCTAAGAACAATGCGTCCAGTTTAAAGAACGACCATTTTGTCAAA
GACagcatcaaaaaacttttggaaGACAGTTGTATTGAAAAAGTATCGGA
GCCACCCTACTGCATCAACCCCTTAACCGTAGCagaaagaaattctaagc
ttaGGTTGGTATTAGATCTCAGACACGTCAATAAATTCAtcaccaaacca
aacaaattcaaatacgaaaatttaaaacaagcctTAGAGTTAATCGACCA
GAACGATTTTTTAATCACTTTCGACCTCAAAAGCGGATACCATCATGTAC
CGATCAATCATATTTTTCGAACCTTT Run BLAST on NCBI protein sequence of TCONS_00041252-protein >TCONS_00041252-protein ID=TCONS_00041252-protein|Name=TCONS_00041252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
XTEVLEKIDDALEAIETTDVEGITTALKKERFWEFEQSSESVSVAGKIMK
FSHFWEKDLKASKFALGVVREGYKIPFESNPPPFYAKNNASSLKNDHFVK
DSIKKLLEDSCIEKVSEPPYCINPLTVAERNSKLRLVLDLRHVNKFITKP
NKFKYENLKQALELIDQNDFLITFDLKSGYHHVPINHIFRTF Run BLAST on NCBI transcript from alignment at sc0002771:1..1467- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041252 ID=TCONS_00041252|Name=TCONS_00041252|organism=Clytia hemisphaerica|type=transcript|length=1467bp|location=Sequence derived from alignment at sc0002771:1..1467- (Clytia hemisphaerica)
NNTACAGAAGTTTTGGAGAAAATTGATGATGCCCTTGAAGCTATCGAAAC
AACGGACGTGGAAGGAATAACAACTGCTTTAAAGAAAGGTAAGCAATTAC
TTGAAACCAGGATAAAGCATTTAATGATCGCCGATGCCTACGGTTGGCTA
ACAGTTAAGTAATTTAAAGCTAATGAATTGACATCTGGGGAGGCAGAGGA
GAAAAGACTAAAGAGGGCAATAAAAAACGCAGAGATTGTCAAAGGCCGTT
TTTATAAAAAACAAAAACTTTCCGATGATTCAGATTACAATAAAGTAATA
AGAAATAAAACCGAACAAAGAAGTTGCATGGACGAAATAGTATGCTACTC
CTGTAAACGTGTTGGACATTACGTATCGCACTGTCCCTTTTCGAATATAG
TATCGCCTTCGTCTCTCGCATATTCAACAAAATCACATTCATCGTCATCA
ACAAATAAAAATTCGTCAAGTTCTTCAAAAAGCTCGAAAGACGGTAAAAG
TACCTCCGGATAAAAATATTCGTTATCACTTTAAATTTCACAGTCAAGTT
GCTTACTCGTGTTGAAAAATTGAAGCGTTATAATTCAAACGACTTTCCTT
AGTATTATTTTATCTTTTATGAACAATTAAATTCATTGTGCTTGATGTAC
TTTAATCAAAAGACAGTAATTTCGAATAATGAAATTCATTGTGTTTAATG
TACTTTAACCAAAGGACAGTCATTTCAATTTATTAAATTTATATACATGA
ACAACACTTAACGTGTAGAATGTAATTCAAATTTGTGTAACATCGTTGTT
TTCTAAATAACTTTCGCCAATTTGATATCAAGTTTTTGTTCGTTTTTTCG
CTTCTCCAGAGAGATTTTGGGAATTTGAGCAATCTTCCGAAAGCGTCTCC
TTTGCTGGTAAGATNTTGTTTTCTAAATAACTTTCGCCAATTTGATATCA
AGTTTTTGTTCGTTTTTTCGCTTCTCCAGAGAGATTTTGGGAATTTGAGC
AATCTTCCGAAAGCGTCTCCGTTGCTGGTAAGATAATGAAATTTTCGCAC
TTTTGGGAAAAAGATTTGAAAGCATCAAAATTCGCCCTGGGTGTCGTACG
TGAAGGCTATAAAATACCCTTTGAATCAAACCCACCACCTTTTTACGCTA
AGAACAATGCGTCCAGTTTAAAGAACGACCATTTTGTCAAAGACAGCATC
AAAAAACTTTTGGAAGACAGTTGTATTGAAAAAGTATCGGAGCCACCCTA
CTGCATCAACCCCTTAACCGTAGCAGAAAGAAATTCTAAGCTTAGGTTGG
TATTAGATCTCAGACACGTCAATAAATTCATCACCAAACCAAACAAATTC
AAATACGAAAATTTAAAACAAGCCTTAGAGTTAATCGACCAGAACGATTT
TTTAATCACTTTCGACCTCAAAAGCGGATACCATCATGTACCGATCAATC
ATATTTTTCGAACCTTT Coding sequence (CDS) from alignment at sc0002771:1..1467- >TCONS_00041252 ID=TCONS_00041252|Name=TCONS_00041252|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at sc0002771:1..1467- (Clytia hemisphaerica)
AGAGATTTTGGGAATTTGAGCAATCTTCCGAAAGCGTCTCCGTTGCTGGT
AAGATAATGAAATTTTCGCACTTTTGGGAAAAAGATTTGAAAGCATCAAA
ATTCGCCCTGGGTGTCGTACGTGAAGGCTATAAAATACCCTTTGAATCAA
ACCCACCACCTTTTTACGCTAAGAACAATGCGTCCAGTTTAAAGAACGAC
CATTTTGTCAAAGACAGCATCAAAAAACTTTTGGAAGACAGTTGTATTGA
AAAAGTATCGGAGCCACCCTACTGCATCAACCCCTTAACCGTAGCAGAAA
GAAATTCTAAGCTTAGGTTGGTATTAGATCTCAGACACGTCAATAAATTC
ATCACCAAACCAAACAAATTCAAATACGAAAATTTAAAACAAGCCTTAGA
GTTAATCGACCAGAACGATTTTTTAATCACTTTCGACCTCAAAAGCGGAT
ACCATCATGTACCGATCAATCATATTTTTCGAACCTTTNNTACAGAAGTT
TTGGAGAAAATTGATGATGCCCTTGAAGCTATCGAAACAACGGACGTGGA
AGGAATAACAACTGCTTTAAAGAAAGAGAGATTTTGGGAATTTGAGCAAT
CTTCCGAAAGCGTCTCCGTTGCTGGTAAGATAATGAAATTTTCGCACTTT
TGGGAAAAAGATTTGAAAGCATCAAAATTCGCCCTGGGTGTCGTACGTGA
AGGCTATAAAATACCCTTTGAATCAAACCCACCACCTTTTTACGCTAAGA
ACAATGCGTCCAGTTTAAAGAACGACCATTTTGTCAAAGACAGCATCAAA
AAACTTTTGGAAGACAGTTGTATTGAAAAAGTATCGGAGCCACCCTACTG
CATCAACCCCTTAACCGTAGCAGAAAGAAATTCTAAGCTTAGGTTGGTAT
TAGATCTCAGACACGTCAATAAATTCATCACCAAACCAAACAAATTCAAA
TACGAAAATTTAAAACAAGCCTTAGAGTTAATCGACCAGAACGATTTTTT
AATCACTTTCGACCTCAAAAGCGGATACCATCATGTACCGATCAATCATA
TTTTTCGAACCTTTNNTACAGAAGTTTTGGAGAAAATTGATGATGCCCTT
GAAGCTATCGAAACAACGGACGTGGAAGGAATAACAACTGCTTTAAAGAA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041252-exon-sc0002771-1575043694:1380..1467 | TCONS_00041252-exon-sc0002771-1575043694:1380..1467 | Clytia hemisphaerica | exon |
| TCONS_00041252-exon-sc0002771-1575043694:1..488 | TCONS_00041252-exon-sc0002771-1575043694:1..488 | Clytia hemisphaerica | exon |
| TCONS_00041252-exon-sc0002771-1510915933:1380..1467 | TCONS_00041252-exon-sc0002771-1510915933:1380..1467 | Clytia hemisphaerica | exon |
| TCONS_00041252-exon-sc0002771-1510915933:1..488 | TCONS_00041252-exon-sc0002771-1510915933:1..488 | Clytia hemisphaerica | exon |
| TCONS_00041252-exon-sc0002771-1491911889:1380..1467 | TCONS_00041252-exon-sc0002771-1491911889:1380..1467 | Clytia hemisphaerica | exon |
| TCONS_00041252-exon-sc0002771-1491911889:1..488 | TCONS_00041252-exon-sc0002771-1491911889:1..488 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002771 | supercontig | sc0002771:1..1467 - |
Blast
The following BLAST results are available for this feature:
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