TCONS_00041251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041251
Unique NameTCONS_00041251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041251 ID=TCONS_00041251|Name=TCONS_00041251|organism=Clytia hemisphaerica|type=transcript|length=361bp
TTCAGGATCAATCACTTCTCTATCCGCGCAGTCCAACGTTGCACAGCCAC
GTTCGAATCCTACTGAGCTGGAATTGCAAGATTCTTTTACGGGAGTTTCC
TCTCTCGAGAGAAATCCAAACGACACCGGATTAAGTATCTCCGAACCAGC
AACGACCGTTACTGATTCCCTTCTTGAACCAACTCAAAACCTCTGTCCGT
CTGTCCCTGTCCAGTCAATTTCAACTAGGAGTTGCTCAACTACCGGCCAA
CCATCAACCTCAAATCCTGATTCGCAAATACAATCTTTGCCGACAACACA
AAAACAATACATAGTTGGAGGTATTTACGCACTCACAAAGGACAATATGA
AAGAAGGGATG
Run BLAST on NCBI

protein sequence of TCONS_00041251-protein

>TCONS_00041251-protein ID=TCONS_00041251-protein|Name=TCONS_00041251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
SGSITSLSAQSNVAQPRSNPTELELQDSFTGVSSLERNPNDTGLSISEPA
TTVTDSLLEPTQNLCPSVPVQSISTRSCSTTGQPSTSNPDSQIQSLPTTQ
KQYIVGGIYALTKDNMKEGM
Run BLAST on NCBI

transcript from alignment at sc0002771:14917..16220+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041251 ID=TCONS_00041251|Name=TCONS_00041251|organism=Clytia hemisphaerica|type=transcript|length=1304bp|location=Sequence derived from alignment at sc0002771:14917..16220+ (Clytia hemisphaerica)
TTCAGGATCAATCACTTCTCTATCCGCGCAGTCCAACGTTGCACAGCCAC
GTTCGAATCCTACTGAGCTGGAATTGCAAGATTCTTTTACGGGAGGTATA
AAGTAATCTAAGTTTGATAATATGtcaatgtttcacattttggaGTACAT
TAGGACAATAAATTGTaagttttcttttcagattTCAAATCTGCTGATCA
TGCTAATAAAACCTTCTCTAAATTTCTCTAAATTTTAGTTTCCTCTCTCG
AGAGAAATCCAAACGACACCGGATTAAGTATCTCCGAACCAGCAACGACC
GTTACTGGTAAGTTTATTCATACTTGTTTGCCCCTATGCTCCTCGTGCTA
ACTTACACAGTTTTTCACAAACAAAATATTATGTAATCCTCAAATGCTAT
TCAATATGTCACGGTACACTTTCCCATTTTcttttaatcaaaaattattt
tcatttgttgaCCCTTTTAATTTTAGATTCCCTTCTTGAACCAACTCAAA
ACCTCTGTCCGTCTGTCCCTGTCCAGTCAATTTCAACTAGGAGTTGCTCA
ACTACCGGCCAACCATCAACCTCAAATCCTGGTGAGTATGttcataattg
tttttatttttattttttaatattgaaaatgtTGCAATTACATTCACTTT
GATTTCTCATGACCACATGACGTAACGAAAATTCCCAAGAAGTTCTGATT
AACATTATCTCTCATCTACAAAAGCAACCagtaaaattggtaaaatgaag
aaaaatttttttttcctaacCACTCTGTTTATATTTATTAGATTCGCAAA
TACAATCTTTGCCGACAACACAAAAACAATACATAGTTGGAGGTATTTAC
GGTAAGAAATGTTATTCTTCTGAGGCTAGTTCAGAGGGAGGGCATATAGA
AGGAGGGTACAAAGGATCACCATGTATCATAAATTAATctgtgtttttaa
aaaatttttgtttagtaTAATTGTACTGCTCATGGAGTGTTAGGAAATTC
AGATTCGCTGTTTATTATATATGCACTACAAAGCCAAAATTAAACCTAAA
ATTTGTAAATGTGCTTTAATTTTTATAGTATATTTACCAATGTTCatgta
aaatgtaaatataaaaaaggtGGCTGCATAAAATCGAAATACATGCCTCC
TAGTTCTGGGTGAGATTCTAAGACGTCCAGGAGCAGTCAGTGAACTAATT
TTAGGAAAACTTTTAACTTGGGAATATTTTTCTTGTGTGATGTAATTGTT
TTTTAACCTATATTCTTTTTAGCACTCACAAAGGACAATATGAAAGAAGG
GATG

Coding sequence (CDS) from alignment at sc0002771:14917..16220+

>TCONS_00041251 ID=TCONS_00041251|Name=TCONS_00041251|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0002771:14917..16220+ (Clytia hemisphaerica)
TCAGGATCAATCACTTCTCTATCCGCGCAGTCCAACGTTGCACAGCCACG
TTCGAATCCTACTGAGCTGGAATTGCAAGATTCTTTTACGGGAGTTTCCT
CTCTCGAGAGAAATCCAAACGACACCGGATTAAGTATCTCCGAACCAGCA
ACGACCGTTACTGATTCCCTTCTTGAACCAACTCAAAACCTCTGTCCGTC
TGTCCCTGTCCAGTCAATTTCAACTAGGAGTTGCTCAACTACCGGCCAAC
CATCAACCTCAAATCCTGATTCGCAAATACAATCTTTGCCGACAACACAA
AAACAATACATAGTTGGAGGTATTTACGCACTCACAAAGGACAATATGAA
AGAAGGGATGTCAGGATCAATCACTTCTCTATCCGCGCAGTCCAACGTTG
CACAGCCACGTTCGAATCCTACTGAGCTGGAATTGCAAGATTCTTTTACG
GGAGTTTCCTCTCTCGAGAGAAATCCAAACGACACCGGATTAAGTATCTC
CGAACCAGCAACGACCGTTACTGATTCCCTTCTTGAACCAACTCAAAACC
TCTGTCCGTCTGTCCCTGTCCAGTCAATTTCAACTAGGAGTTGCTCAACT
ACCGGCCAACCATCAACCTCAAATCCTGATTCGCAAATACAATCTTTGCC
GACAACACAAAAACAATACATAGTTGGAGGTATTTACGCACTCACAAAGG
ACAATATGAAAGAAGGGATGTCAGGATCAATCACTTCTCTATCCGCGCAG
TCCAACGTTGCACAGCCACGTTCGAATCCTACTGAGCTGGAATTGCAAGA
TTCTTTTACGGGAGTTTCCTCTCTCGAGAGAAATCCAAACGACACCGGAT
TAAGTATCTCCGAACCAGCAACGACCGTTACTGATTCCCTTCTTGAACCA
ACTCAAAACCTCTGTCCGTCTGTCCCTGTCCAGTCAATTTCAACTAGGAG
TTGCTCAACTACCGGCCAACCATCAACCTCAAATCCTGATTCGCAAATAC
AATCTTTGCCGACAACACAAAAACAATACATAGTTGGAGGTATTTACGCA
CTCACAAAGGACAATATGAAAGAAGGGATGTCAGGATCAATCACTTCTCT
ATCCGCGCAGTCCAACGTTGCACAGCCACGTTCGAATCCTACTGAGCTGG
AATTGCAAGATTCTTTTACGGGAGTTTCCTCTCTCGAGAGAAATCCAAAC
GACACCGGATTAAGTATCTCCGAACCAGCAACGACCGTTACTGATTCCCT
TCTTGAACCAACTCAAAACCTCTGTCCGTCTGTCCCTGTCCAGTCAATTT
CAACTAGGAGTTGCTCAACTACCGGCCAACCATCAACCTCAAATCCTGAT
TCGCAAATACAATCTTTGCCGACAACACAAAAACAATACATAGTTGGAGG
TATTTACGCACTCACAAAGGACAATATGAAAGAAGGGATGTCAGGATCAA
TCACTTCTCTATCCGCGCAGTCCAACGTTGCACAGCCACGTTCGAATCCT
ACTGAGCTGGAATTGCAAGATTCTTTTACGGGAGTTTCCTCTCTCGAGAG
AAATCCAAACGACACCGGATTAAGTATCTCCGAACCAGCAACGACCGTTA
CTGATTCCCTTCTTGAACCAACTCAAAACCTCTGTCCGTCTGTCCCTGTC
CAGTCAATTTCAACTAGGAGTTGCTCAACTACCGGCCAACCATCAACCTC
AAATCCTGATTCGCAAATACAATCTTTGCCGACAACACAAAAACAATACA
TAGTTGGAGGTATTTACGCACTCACAAAGGACAATATGAAAGAAGGGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025252XLOC_025252Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041251-proteinTCONS_00041251-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041251-exon-sc0002771-1491911889:14917..15011TCONS_00041251-exon-sc0002771-1491911889:14917..15011Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1510915933:14917..15011TCONS_00041251-exon-sc0002771-1510915933:14917..15011Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1575043694:14917..15011TCONS_00041251-exon-sc0002771-1575043694:14917..15011Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1491911889:15155..15223TCONS_00041251-exon-sc0002771-1491911889:15155..15223Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1510915933:15155..15223TCONS_00041251-exon-sc0002771-1510915933:15155..15223Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1575043694:15155..15223TCONS_00041251-exon-sc0002771-1575043694:15155..15223Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1491911889:15393..15497TCONS_00041251-exon-sc0002771-1491911889:15393..15497Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1510915933:15393..15497TCONS_00041251-exon-sc0002771-1510915933:15393..15497Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1575043694:15393..15497TCONS_00041251-exon-sc0002771-1575043694:15393..15497Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1491911889:15708..15767TCONS_00041251-exon-sc0002771-1491911889:15708..15767Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1510915933:15708..15767TCONS_00041251-exon-sc0002771-1510915933:15708..15767Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1575043694:15708..15767TCONS_00041251-exon-sc0002771-1575043694:15708..15767Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1491911889:16189..16220TCONS_00041251-exon-sc0002771-1491911889:16189..16220Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1510915933:16189..16220TCONS_00041251-exon-sc0002771-1510915933:16189..16220Clytia hemisphaericaexon
TCONS_00041251-exon-sc0002771-1575043694:16189..16220TCONS_00041251-exon-sc0002771-1575043694:16189..16220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002771supercontigsc0002771:14917..16220 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.233406	0.682823	0	0	4.24993	5.35776	7.10342	6.3354	12.3659	12.371	11.3822	8.57601	9.22255	10.957	1.59043	1.44906	2.40692	2.73275	0.992464	1.73873	2.85653	1.48918	1.27247	2.18974	3.70812	3.63603	0.920366	3.0195	1.03625	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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