TCONS_00041245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041245
Unique NameTCONS_00041245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041245 ID=TCONS_00041245|Name=TCONS_00041245|organism=Clytia hemisphaerica|type=transcript|length=547bp
GGGAAATTAAGAGATGACATGTGAAATGGAGCTCCACGTGATGAGAGTTg
aagttggaaattttggaagaagcacaaaaatgacaaaaaaagacAGCAAG
TGACAAGTAGCAGCAAAAGACTACAAAGGTGACAGTTTCTATATTTTAAT
AAGAAGTAATTTGATGTTTCTGAAGCTTTACATTGTAATATTCTTTCAGT
CTACACCCAGTGTACATGTTTGCTACATTTCATGGTTGAGCTAAAAGCTG
gagttttaaagtttgaaaCCTACTTTTATGTGTCTACTTTCGATACTTTA
CTTTAGCCAAAGTTCTAAGGCTAATAGTACGATTTTGACTTTGAAATGAT
TTATACTTAGTTGCAAACAAACTTGGTAAAAACTTGCTTANACTTTGAAA
TGATGTATACTTAGTTGCAAACGAGCTTGGTAAAAACTTGCTCGCCATTG
CAGAAGACGTTTCGTATTCTCAAGGCAATAAGATATTTTGTGATCAAAGG
TAAATTAAAAACATGTACGTTCTTCCCAATGTCAATTAAAAAAGcgc
Run BLAST on NCBI

transcript from alignment at sc0002768:4131..4677

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041245 ID=TCONS_00041245|Name=TCONS_00041245|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at sc0002768:4131..4677 (Clytia hemisphaerica)
gcgCTTTTTTAATTGACATTGGGAAGAACGTACATGTTTTTAATTTACCT
TTGATCACAAAATATCTTATTGCCTTGAGAATACGAAACGTCTTCTGCAA
TGGCGAGCAAGTTTTTACCAAGCTCGTTTGCAACTAAGTATACATCATTT
CAAAGTNTAAGCAAGTTTTTACCAAGTTTGTTTGCAACTAAGTATAAATC
ATTTCAAAGTCAAAATCGTACTATTAGCCTTAGAACTTTGGCTAAAGTAA
AGTATCGAAAGTAGACACATAAAAGTAGGtttcaaactttaaaactcCAG
CTTTTAGCTCAACCATGAAATGTAGCAAACATGTACACTGGGTGTAGACT
GAAAGAATATTACAATGTAAAGCTTCAGAAACATCAAATTACTTCTTATT
AAAATATAGAAACTGTCACCTTTGTAGTCTTTTGCTGCTACTTGTCACTT
GCTgtctttttttgtcatttttgtgcttcttccaaaatttccaacttcAA
CTCTCATCACGTGGAGCTCCATTTCACATGTCATCTCTTAATTTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025246XLOC_025246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041245-exon-sc0002768-1491911889:4131..4677TCONS_00041245-exon-sc0002768-1491911889:4131..4677Clytia hemisphaericaexon
TCONS_00041245-exon-sc0002768-1510915933:4131..4677TCONS_00041245-exon-sc0002768-1510915933:4131..4677Clytia hemisphaericaexon
TCONS_00041245-exon-sc0002768-1575043694:4131..4677TCONS_00041245-exon-sc0002768-1575043694:4131..4677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002768supercontigsc0002768:4131..4677 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.524819	0.409425	0.434061	0.116272	1.55704	0.84329	1.10625	1.26336	0.743565	0.511398	1.13806	0.411541	0.212655	2.60987	0.596019	0.35802	0.0787959	0.465471	0	0.116759	0.507424	1.23615	0.120349	0.328245	2.17939	3.28621	0.431778	0.153602	0.349505	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top