TCONS_00041233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041233
Unique NameTCONS_00041233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041233 ID=TCONS_00041233|Name=TCONS_00041233|organism=Clytia hemisphaerica|type=transcript|length=711bp
AAGAAGAGGACAGAGTggtgtttcaacaacaagaagagggcaGAGTGATG
TTTGAATAGTGATTCTCTCATTTCCAATCAATACCGACCCCAGCCATTAA
TCGATACCGAGGCCAACTACCAATCGATGCCGACCCGAAATATCAATCGA
TACTGACCATACCTTCCAATCAATACCGACCCTAACTTCCTATAGCTTTT
GGCTCTTGTATATATATCTGATCGATATCGAGCCAATCTTTGCTAccaaa
ttttattctaaatcaACACCGACCCTAATACTAAAAGATGATGTCACTAC
TCCAAGCTGATGGAAAATTCTGGCAGTACCAGTTCTACCTGTACTTCGGG
AGTCAGGGGTGGTACTGCCAGATTGAATTAACTCAGCTCGCAATACGTGA
ACAATCAATCGATGATTCCAACACAAAGAGGAGGACAGAATGATGTTTAT
TCAACAACAACAAGATGAGGACAGagtgatgtttcaacaacaacaagagg
AGGGCAGGATGATGtttcgacaacaacaacaagaagaggggagagtgatg
tttcaacaacaagagAAGGGCAGGCTGATGTTTCGACAACAAGAAGAGGG
CAGAGTGGTGattcaacaacaagaagagggcagagtgatgtttcaacact
aatttttagagggagcacgctgcgatggagagcgcttaaattttgcacac
acacccttgag
Run BLAST on NCBI

transcript from alignment at sc0002765:8430..9140

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041233 ID=TCONS_00041233|Name=TCONS_00041233|organism=Clytia hemisphaerica|type=transcript|length=711bp|location=Sequence derived from alignment at sc0002765:8430..9140 (Clytia hemisphaerica)
ctcaagggtgtgtgtgcaaaatttaagcgctctccatcgcagcgtgctcc
ctctaaaaattagtgttgaaacatcactctgccctcttcttgttgttgaa
tCACCACTCTGCCCTCTTCTTGTTGTCGAAACATCAGCCTGCCCTTctct
tgttgttgaaacatcactctcccctcttcttgttgttgttgtcgaaaCAT
CATCCTGCCCTcctcttgttgttgttgaaacatcactCTGTCCTCATCTT
GTTGTTGTTGAATAAACATCATTCTGTCCTCCTCTTTGTGTTGGAATCAT
CGATTGATTGTTCACGTATTGCGAGCTGAGTTAATTCAATCTGGCAGTAC
CACCCCTGACTCCCGAAGTACAGGTAGAACTGGTACTGCCAGAATTTTCC
ATCAGCTTGGAGTAGTGACATCATCTTTTAGTATTAGGGTCGGTGTtgat
ttagaataaaatttggTAGCAAAGATTGGCTCGATATCGATCAGATATAT
ATACAAGAGCCAAAAGCTATAGGAAGTTAGGGTCGGTATTGATTGGAAGG
TATGGTCAGTATCGATTGATATTTCGGGTCGGCATCGATTGGTAGTTGGC
CTCGGTATCGATTAATGGCTGGGGTCGGTATTGATTGGAAATGAGAGAAT
CACTATTCAAACATCACTCtgccctcttcttgttgttgaaacaccACTCT
GTCCTCTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025234XLOC_025234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041233-exon-sc0002765-1491911889:8430..9140TCONS_00041233-exon-sc0002765-1491911889:8430..9140Clytia hemisphaericaexon
TCONS_00041233-exon-sc0002765-1510915933:8430..9140TCONS_00041233-exon-sc0002765-1510915933:8430..9140Clytia hemisphaericaexon
TCONS_00041233-exon-sc0002765-1575043694:8430..9140TCONS_00041233-exon-sc0002765-1575043694:8430..9140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002765supercontigsc0002765:8430..9140 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0689171	0.101759	0.156573	0.285919	0.10304	0.472348	0.190535	0.0947572	0.073768	0.143202	0.160256	0.255712	0.146437	0.123079	0.101506	0.0530538	0.0543784	0	0.0999727	0	0.136032	0	0	0.895866	0.880917	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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