TCONS_00041226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041226
Unique NameTCONS_00041226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041226 ID=TCONS_00041226|Name=TCONS_00041226|organism=Clytia hemisphaerica|type=transcript|length=568bp
TAACAGTTGATCGTCAACAACTATTGGAAATCATCTAATCAGAAAGATGT
ACTCAAAGATGATCAAATGATGAGCTTCAAAGACTTTAGGACACTTTTAA
ACTTTCGAGGACGACCTGGCCTAATACCAGTACTAAAAGACAGATGAGTT
AAAGAACTAATATGttgtgaatgttttgattatcacTTAACTTTGGTGTT
TGCAAAACTTACAGATATATGAAActctaaaaaggctgatttcatAAATG
GTGGAATGATTGACCCAAGCTTATTGAATTCATACTCTTGACATTCAATT
AAATTGATTGCAAActtgagaatatttttggtattttgaatgACATAGTA
CATATATACAAGATGTTGATTGACTATTTCTATTTTAATAAACCTAAATG
TGTTAATATCCATATTGGAATGAAGAAATAATAATCATGGTAGTAGACAC
TCAACTAGAGGGAGTCTTGATATTTTACGATGGACTTGAATGACATTTTT
acatacaaacattttttaaactctaTTTCACTAAAACTATATCTACGATA
TAAAACTGTACTTTTGGG
Run BLAST on NCBI

transcript from alignment at sc0002763:1935..2502

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041226 ID=TCONS_00041226|Name=TCONS_00041226|organism=Clytia hemisphaerica|type=transcript|length=568bp|location=Sequence derived from alignment at sc0002763:1935..2502 (Clytia hemisphaerica)
CCCAAAAGTACAGTTTTATATCGTAGATATAGTTTTAGTGAAAtagagtt
taaaaaatgtttgtatgtAAAAATGTCATTCAAGTCCATCGTAAAATATC
AAGACTCCCTCTAGTTGAGTGTCTACTACCATGATTATTATTTCTTCATT
CCAATATGGATATTAACACATTTAGGTTTATTAAAATAGAAATAGTCAAT
CAACATCTTGTATATATGTACTATGTcattcaaaataccaaaaatattct
caagTTTGCAATCAATTTAATTGAATGTCAAGAGTATGAATTCAATAAGC
TTGGGTCAATCATTCCACCATTTatgaaatcagcctttttagagTTTCAT
ATATCTGTAAGTTTTGCAAACACCAAAGTTAAgtgataatcaaaacattc
acaaCATATTAGTTCTTTAACTCATCTGTCTTTTAGTACTGGTATTAGGC
CAGGTCGTCCTCGAAAGTTTAAAAGTGTCCTAAAGTCTTTGAAGCTCATC
ATTTGATCATCTTTGAGTACATCTTTCTGATTAGATGATTTCCAATAGTT
GTTGACGATCAACTGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025227XLOC_025227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041226-exon-sc0002763-1491911889:1935..2502TCONS_00041226-exon-sc0002763-1491911889:1935..2502Clytia hemisphaericaexon
TCONS_00041226-exon-sc0002763-1510915933:1935..2502TCONS_00041226-exon-sc0002763-1510915933:1935..2502Clytia hemisphaericaexon
TCONS_00041226-exon-sc0002763-1575043694:1935..2502TCONS_00041226-exon-sc0002763-1575043694:1935..2502Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002763supercontigsc0002763:1935..2502 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.82554	1.29773	0.351091	1.27383	0.197728	0.415484	0.759847	0.422703	0.49071	0	0.58231	0.166755	0	0.213417	0.980806	0.9985	2.16638	1.37396	2.17291	2.81162	0	0.299362	14.992	10.3593	8.07692	8.21328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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