TCONS_00041209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041209
Unique NameTCONS_00041209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041209 ID=TCONS_00041209|Name=TCONS_00041209|organism=Clytia hemisphaerica|type=transcript|length=1334bp
TGACGACACATAGCTATCTCAAAGGAAACACTTCTAATAGTAGTTGACGA
ATGTTGATCAATCAATAATTTGAAGCAGTTCTAAAATAATTAACTTGAAA
AACATTATCAATGTGTCTCATGGCAACTAATGAATCCATCATAAATGACT
GAAATGTCCGACGTCATTGCTTCCACACTTTCTTCAAAACAGTTAAATAT
AAGTGAATGTGTAAAGTATTGATTATAGAATGATAAATGTTTTCCgctaa
agattcaaataaaaaaacgaaagcagaagaaatttccttttttagaCGTT
ACTCTGGTCAGCAAAATATTTATGAAGTCGAAAATCGCTGTATAAGAGAT
GAGAAAGATATATTAGCATCACCGTAACATAGCCTCGACATTAATTTCGT
AAGGCAAAGTAAAttggtcaaaaaatattcaaaacaaggaTCTGAAAGCC
ATGATCATTTCAATAGCCAACACATAGTCAGCACAACACAGAGTTTGAAT
TCGCTGAAATCTCAACAAGCTTTGACAAGGATGatatcaaaaagtcaaaa
aaactttttgacaatAATGAAAAGTTTATCTTGAAATCAAATGAGGGAGT
TCcagcaaaattttaatcaaacaGAAGAGGGTTCAAAATCCACAATAATT
TCAACAATCAGCCTGTCAGCACTTCTCAAGTTTGAGTTTGATGTGATCTC
GAAGTCTTTTTAGTTTTGACAGATTTGTTTCCATACATCATGTCTGTACA
AAATATACTTTTACATTATTGTTCTTCTGAAACTCATAGATCATTCATCA
ATCTTGtttcttcttttctcttttcagGCGTCACCCTCGATCCGTCCTTT
GTACCGTTCGAAGTCAATTCAGATGTTGAAAGCTCATCGGAAGTGTCATT
ATGTTTagCTTTCATCTTTCATTCGAAACTTAGAAGAACACGTATGGTGA
CAATGGAGTCACAAAGTGGTACTTAATGGCGTGTATATTTAAAACTCGTA
TCAAGAAGTACCTTAGATATAACCACTCACAGTAGAGATGAAATGAGTAT
TTTTGAGTAAGTCTTTTTTGTTAAAACAGTTCTGGTGTTTTTGTTAAGGA
TGTTTACAAGCTAAGGAATGTTTCTTGTATGTAAGTAGATCGGGTGATGG
TGGAATAGCTACTGCTACTACTTAGATAATGATCTTGAAATGAAACTTTA
CTTGACCATTCCATACTGAGATATAATTACTTTCCTCTTCTCCTTACAAA
TTTTGAGTAGGGGTACTTATCCAACAATGAATGTTTAAGGGTGAAAACTA
TTCATTCTGCGTTAGGGATCTCAGAATATAATTG
Run BLAST on NCBI

transcript from alignment at sc0002752:14..1461+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041209 ID=TCONS_00041209|Name=TCONS_00041209|organism=Clytia hemisphaerica|type=transcript|length=1448bp|location=Sequence derived from alignment at sc0002752:14..1461+ (Clytia hemisphaerica)
TGACGACACATAGCTATCTCAAAGGAAACACTTCTAATAGTAGTTGACGA
ATGTTGATCAATCAATAATTTGAAGCAGTTCTAAAATAATTAACTTGAAA
AACATTATCAATGTGTCTCATGGCAACTAATGAATCCATCATAAATGACT
GAAATGTCCGACGTCATTGCTTCCACACTTTCTTCAAAACAGTTAAATAT
AAGTGAATGTGTAAAGTATTGATTATAGAATGATAAATGTTTTCCgctaa
agattcaaataaaaaaacgaaagcagaagaaatttccttttttagaCGTT
ACTCTGGTCAGCAAAATATTTATGAAGTCGAAAATCGCTGTATAAGAGAT
GAGAAAGATATATTAGCATCACCGTAACATAGCCTCGACATTAATTTCGT
AAGGCAAAGTAAAttggtcaaaaaatattcaaaacaaggaTCTGAAAGCC
ATGATCATTTCAATAGCCAACACATAGTCAGCACAACACAGAGTTTGAAT
TCGCTGAAATCTCAACAAGCTTTGACAAGGATGatatcaaaaagtcaaaa
aaactttttgacaatAATGAAAAGTTTATCTTGAAATCAAATGAGGGAGT
TCcagcaaaattttaatcaaacaGAAGAGGGTTCAAAATCCACAATAATT
TCAACAATCAGCCTGTCAGCACTTCTCAAGTTTGAGTTTGATGTGATCTC
GAAGTCTTTTTAGTTTTGACAGATTTGTTTCCATACATCATGTCTGTACA
AAATATACTTTTACATTATTGTTCTTCTGAAACTCATAGATCATTCATCA
ATCTTGtttcttcttttctcttttcagGCGTCACCCTCGATCCGTCCTTT
GTACCGTTCGAAGTCAATTCAGATGTTGAAAGCTCATCGGAAGTGTCATT
ATGTTTaggtaaatatttttgaacttaTACTATATACCTGCTACTTTTAA
ACTACGACTTGATCCTGATTTAGTGTAACCCTGTAAACTCATATTTTTAC
TCtcatttttttttaccttcaGCTTTCATCTTTCATTCGAAACTTAGAAG
AACACGTATGGTGACAATGGAGTCACAAAGTGGTACTTAATGGCGTGTAT
ATTTAAAACTCGTATCAAGAAGTACCTTAGATATAACCACTCACAGTAGA
GATGAAATGAGTATTTTTGAGTAAGTCTTTTTTGTTAAAACAGTTCTGGT
GTTTTTGTTAAGGATGTTTACAAGCTAAGGAATGTTTCTTGTATGTAAGT
AGATCGGGTGATGGTGGAATAGCTACTGCTACTACTTAGATAATGATCTT
GAAATGAAACTTTACTTGACCATTCCATACTGAGATATAATTACTTTCCT
CTTCTCCTTACAAATTTTGAGTAGGGGTACTTATCCAACAATGAATGTTT
AAGGGTGAAAACTATTCATTCTGCGTTAGGGATCTCAGAATATAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025210XLOC_025210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041209-exon-sc0002752-1491911889:14..921TCONS_00041209-exon-sc0002752-1491911889:14..921Clytia hemisphaericaexon
TCONS_00041209-exon-sc0002752-1510915933:14..921TCONS_00041209-exon-sc0002752-1510915933:14..921Clytia hemisphaericaexon
TCONS_00041209-exon-sc0002752-1575043694:14..921TCONS_00041209-exon-sc0002752-1575043694:14..921Clytia hemisphaericaexon
TCONS_00041209-exon-sc0002752-1491911889:1036..1461TCONS_00041209-exon-sc0002752-1491911889:1036..1461Clytia hemisphaericaexon
TCONS_00041209-exon-sc0002752-1510915933:1036..1461TCONS_00041209-exon-sc0002752-1510915933:1036..1461Clytia hemisphaericaexon
TCONS_00041209-exon-sc0002752-1575043694:1036..1461TCONS_00041209-exon-sc0002752-1575043694:1036..1461Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002752supercontigsc0002752:14..1461 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1389	1.76352	1.79676	2.88736	0.701733	0.369666	0.364898	0.303656	0.318895	0.362086	0.479249	0.238257	0.377522	0.471715	0.322327	0.218001	0.488289	0.625601	0.435802	0.144709	0.597446	0.624634	0.542374	0.854702	0.279343	0.249307	0.0864836	0.230744	0.449186	0.14711
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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