TCONS_00041206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041206
Unique NameTCONS_00041206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041206 ID=TCONS_00041206|Name=TCONS_00041206|organism=Clytia hemisphaerica|type=transcript|length=448bp
ttGAAGGctattaaaattgtaaaatggttAAAAGACAAGGTCGTAATAAA
AAGTAGTTAAAAAAGGTATAATTCTCTAGAGGCATTTAGGCCGTTGTTTA
AAATAGGTTTCAGTCTTTTGATATGTAAAGCTTCTTTGTATAGAAGTGAT
GACCAATTATCACTGGAATCAATTACTGACGTATTATCATTTACGAGATT
TATGAAGATGGAGCGAAAATTAGGCTTTTCAATACCAAGCGTCAGGAGGG
TAGTTATAAACTTGACTTCAGAGCACTCCTTCAAATGTTCGAAAACTGCA
CTCTCCTTCTTTGTAGCATGTTCTGAGCATCGCGTGAATAAATTCCTCTC
CGTTTTGCCGACATAAGAGGCACGACAACCAGGGCAGATAAATCGATAAA
CAATGTTCGACTTGAACTTCAAGGGTGTTGGGTCTTTCATGTTGGTGT
Run BLAST on NCBI

protein sequence of TCONS_00041206-protein

>TCONS_00041206-protein ID=TCONS_00041206-protein|Name=TCONS_00041206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
TNMKDPTPLKFKSNIVYRFICPGCRASYVGKTERNLFTRCSEHATKKESA
VFEHLKECSEVKFITTLLTLGIEKPNFRSIFINLVNDNTSVIDSSDNWSS
LLYKEALHIKRLKPILNNGLNASRELYLF
Run BLAST on NCBI

transcript from alignment at sc0002749:3177..3624

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041206 ID=TCONS_00041206|Name=TCONS_00041206|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at sc0002749:3177..3624 (Clytia hemisphaerica)
ACACCAACATGAAAGACCCAACACCCTTGAAGTTCAAGTCGAACATTGTT
TATCGATTTATCTGCCCTGGTTGTCGTGCCTCTTATGTCGGCAAAACGGA
GAGGAATTTATTCACGCGATGCTCAGAACATGCTACAAAGAAGGAGAGTG
CAGTTTTCGAACATTTGAAGGAGTGCTCTGAAGTCAAGTTTATAACTACC
CTCCTGACGCTTGGTATTGAAAAGCCTAATTTTCGCTCCATCTTCATAAA
TCTCGTAAATGATAATACGTCAGTAATTGATTCCAGTGATAATTGGTCAT
CACTTCTATACAAAGAAGCTTTACATATCAAAAGACTGAAACCTATTTTA
AACAACGGCCTAAATGCCTCTAGAGAATTATACCTTTTTTAACTACTTTT
TATTACGACCTTGTCTTTTaaccattttacaattttaatagCCTTCaa

Coding sequence (CDS) from alignment at sc0002749:3177..3624

>TCONS_00041206 ID=TCONS_00041206|Name=TCONS_00041206|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at sc0002749:3177..3624 (Clytia hemisphaerica)
ACCAACATGAAAGACCCAACACCCTTGAAGTTCAAGTCGAACATTGTTTA
TCGATTTATCTGCCCTGGTTGTCGTGCCTCTTATGTCGGCAAAACGGAGA
GGAATTTATTCACGCGATGCTCAGAACATGCTACAAAGAAGGAGAGTGCA
GTTTTCGAACATTTGAAGGAGTGCTCTGAAGTCAAGTTTATAACTACCCT
CCTGACGCTTGGTATTGAAAAGCCTAATTTTCGCTCCATCTTCATAAATC
TCGTAAATGATAATACGTCAGTAATTGATTCCAGTGATAATTGGTCATCA
CTTCTATACAAAGAAGCTTTACATATCAAAAGACTGAAACCTATTTTAAA
CAACGGCCTAAATGCCTCTAGAGAATTATACCTTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025207XLOC_025207Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041206-proteinTCONS_00041206-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041206-exon-sc0002749-1491911889:3177..3624TCONS_00041206-exon-sc0002749-1491911889:3177..3624Clytia hemisphaericaexon
TCONS_00041206-exon-sc0002749-1510915933:3177..3624TCONS_00041206-exon-sc0002749-1510915933:3177..3624Clytia hemisphaericaexon
TCONS_00041206-exon-sc0002749-1575043694:3177..3624TCONS_00041206-exon-sc0002749-1575043694:3177..3624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002749supercontigsc0002749:3177..3624 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.301895	0.730487	0.341821	0.227654	2.58581	3.28174	1.83867	1.85225	0.185073	1.02273	0	0.830979	0.836927	1.44648	0.306477	0.152159	0.286001	0.533946	0.861174	2.05999	3.41832	1.08205	1.53813	1.39676	0	0.426718	2.4496	2.626	0.745255	0.241655
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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