TCONS_00041200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041200
Unique NameTCONS_00041200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041200 ID=TCONS_00041200|Name=TCONS_00041200|organism=Clytia hemisphaerica|type=transcript|length=353bp
GTGGCAACCAAACTATACTTGTCCTCCATTTTCTTTAGATAAATTTGCAC
CCATTTTCGGGTTGCAATGGCATCCAGAGAAGTCCTTATTTATGCATAAT
CCAAGTTTAGCCATAGACCATTCCACATTTGCCGTAACGGCCGCACAATA
CATTGCAAACTTTTTCATGGGGTTGGCACGTCAAAATCCAAATCAATTCA
AAACACGCAAAGACGAGGAGAAATATTTGTTGTATAAGAATTCAGCTGTT
TATGTCGGAAACATCACTGAAACTCCATACGAACAAGTATATTTGTTTCC
GCTCTACTCGGAGAAATTTGCAGACCGGAATATTGAGACTGATAAAAAAG
Aca
Run BLAST on NCBI

protein sequence of TCONS_00041200-protein

>TCONS_00041200-protein ID=TCONS_00041200-protein|Name=TCONS_00041200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
WQPNYTCPPFSLDKFAPIFGLQWHPEKSLFMHNPSLAIDHSTFAVTAAQY
IANFFMGLARQNPNQFKTRKDEEKYLLYKNSAVYVGNITETPYEQVYLFP
LYSEKFADRNIETDKKD
Run BLAST on NCBI

transcript from alignment at sc0002747:4073..4425

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041200 ID=TCONS_00041200|Name=TCONS_00041200|organism=Clytia hemisphaerica|type=transcript|length=353bp|location=Sequence derived from alignment at sc0002747:4073..4425 (Clytia hemisphaerica)
tgTCTTTTTTATCAGTCTCAATATTCCGGTCTGCAAATTTCTCCGAGTAG
AGCGGAAACAAATATACTTGTTCGTATGGAGTTTCAGTGATGTTTCCGAC
ATAAACAGCTGAATTCTTATACAACAAATATTTCTCCTCGTCTTTGCGTG
TTTTGAATTGATTTGGATTTTGACGTGCCAACCCCATGAAAAAGTTTGCA
ATGTATTGTGCGGCCGTTACGGCAAATGTGGAATGGTCTATGGCTAAACT
TGGATTATGCATAAATAAGGACTTCTCTGGATGCCATTGCAACCCGAAAA
TGGGTGCAAATTTATCTAAAGAAAATGGAGGACAAGTATAGTTTGGTTGC
CAC

Coding sequence (CDS) from alignment at sc0002747:4073..4425

>TCONS_00041200 ID=TCONS_00041200|Name=TCONS_00041200|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0002747:4073..4425 (Clytia hemisphaerica)
gTCTTTTTTATCAGTCTCAATATTCCGGTCTGCAAATTTCTCCGAGTAGA
GCGGAAACAAATATACTTGTTCGTATGGAGTTTCAGTGATGTTTCCGACA
TAAACAGCTGAATTCTTATACAACAAATATTTCTCCTCGTCTTTGCGTGT
TTTGAATTGATTTGGATTTTGACGTGCCAACCCCATGAAAAAGTTTGCAA
TGTATTGTGCGGCCGTTACGGCAAATGTGGAATGGTCTATGGCTAAACTT
GGATTATGCATAAATAAGGACTTCTCTGGATGCCATTGCAACCCGAAAAT
GGGTGCAAATTTATCTAAAGAAAATGGAGGACAAGTATAGTTTGGTTGCC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025201XLOC_025201Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041200-proteinTCONS_00041200-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041200-exon-sc0002747-1491911889:4073..4425TCONS_00041200-exon-sc0002747-1491911889:4073..4425Clytia hemisphaericaexon
TCONS_00041200-exon-sc0002747-1510915933:4073..4425TCONS_00041200-exon-sc0002747-1510915933:4073..4425Clytia hemisphaericaexon
TCONS_00041200-exon-sc0002747-1575043694:4073..4425TCONS_00041200-exon-sc0002747-1575043694:4073..4425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002747supercontigsc0002747:4073..4425 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.246373	0.240252	2.51061	1.09166	2.32573	2.36292	62.4	76.2105	39.0314	22.8875	33.9468	9.6809	19.0072	15.6552	10.4924	18.6165	4.99368	3.98095	0	0.548119	1.90566	2.43997	0.564973	0.256821	1.58712	2.1247	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029062Class_I_gatase-like
IPR015527Pept_C26_g-glut_hydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0008242omega peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006541glutamine metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006541 glutamine metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0008242 omega peptidase activity
Blast
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BLAST of TCONS_00041200 vs. Swiss-Prot (Human)
Match: GGH (Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 8.491e-16
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 2 
Query:   50 PIFGLQWHPEKSLFMHNPSLAIDHSTFAVTAAQYIANFFMGLARQNPNQFKTRKDEEKYLLYKNSAVYVGNITETPYEQVYLF 298
            P++G+QWHPEK+ +       I H+  AV  A Y+A FF+  AR+N + FK+  +EEK L+Y+ S +Y GNI+   ++Q Y+F
Sbjct:  237 PVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNISS--FQQCYIF 317
The following BLAST results are available for this feature:
BLAST of TCONS_00041200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GGH8.491e-1642.17Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE... [more]
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