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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041197 ID=TCONS_00041197|Name=TCONS_00041197|organism=Clytia hemisphaerica|type=transcript|length=920bp
CCTCAGAAATACTAACAGCTCGTCCACCAGTCATTTCAATCAATTTCACA
AAACTGGCACCAAAATATTCTTTAGACCATGATACAGGGTATTCCGATAA
AATCTTATCTCCATCCAGAGGCATGGGGACGATTCCTATGACTGGTCGAA
GGTTAATAAATTTCTTGTATGTCTCTGTGAAGTAGTTGGTTGGGAATGAG
GACAGCGTTGGATAACCATTGTCCTTTGACTTGTTGCCACTTctcaaaag
aaacaaaaacaaaagcgGCGGTGGCACCAACACCTCCACATTGGCTGGCC
TCTTACAAGAAGACTACACTTCATCGGGTGACTCGTATTTCATTGATAAC
GCCTGGAGAGGCGCAGAGgcgTTCCATTTCTACTTATTGGCTCAACGACA
ATTGTATGAAGGAAGACCTGACGCCGCTTTGAGAACGGTATGTTAACGAT
TCCAGGTGTTTCTCTGGAAGTTTATCATTCTATGACATAACCTTTTTATA
CGGAACCACTCGCTGTTGCCATTAGTTTTACaatgttaaaagttcttccC
TTTCAGACGGATTTCCGGCTCCGTGAAATATTAAAGAGGCTTTTCcatct
caaaattctgcatataTGCATATATGCTTTTGTCCACTTTTGTCCACTTT
CCGTCCAAGACGAAAAACCttcttgctttgaccactggtTTTAGTGTTAC
AAATTGCAACTACAAGTGTTACAAGATGCCCAACCAGTGTTTTTTGGGTT
TTCCGTATCAAAGATTACGTCCTCCAAAATTTGACAATAGTTTCTAGCCC
AATACGTCTTTTAAACAATGGGGAGATACGTTTTGGGTGGGACAAAACAG
AATTTCCTAGTTATCTGTGAAGTTTTACTGAGGTAAAAATCGAAAATAGC
ACTTCAAAACCAGTAAAATC Run BLAST on NCBI transcript from alignment at sc0002747:8077..10202+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041197 ID=TCONS_00041197|Name=TCONS_00041197|organism=Clytia hemisphaerica|type=transcript|length=2126bp|location=Sequence derived from alignment at sc0002747:8077..10202+ (Clytia hemisphaerica)
CCTCAGAAATACTAACAGCTCGTCCACCAGTCATTTCAATCAATTTCACA
AAACTGGCACCAAAATATTCTTTAGACCATGATACAGGGTATTCCGATAA
AATCTTATCTCCATCCAGAGGCATGGGGACGATTCCTATGACTGGTCGAA
GGTTAATAAATTTCTTGTATGTCTCTGTGAAGTAGTTGGTTGGGAATGAG
GACAGCGTTGGATAACCATTGTCCTTTGACTTGTTGCCACTTctcaaaag
aaacaaaaacaaaagcgGCGGTGGCACCAACACCTCCACATTGGCTGGCC
TCTTACAAGAAGACTACACTTCATCGGGTGACTCGTATTTCATTGATAAC
GCCTGGAGAGGCGCAGAGGTCAGTGTAATGTtaatctcataaccgatcat
ccattctgcgctACCAAGCTCTGCTTTAAAGGGATAAGGCGAATGTGACG
ATCTGACCTTGTTGTTTACCAAAACATTCTAAAATACGTTGCCATTTACA
TAAACAGTGAAGTCTCTGTAACTTGAACCTCTACaaatcgaatgtctcct
taactcgagcaaatctttaaaattctGAACTTTCTCAGAAGTATAATCTC
TGCCGGAATACATTTAGAGTTTGCGCTATTTCCTCATTTTTCGCATTTTG
AAGGTCGGgtgagaaagtcgcttttgggctatcTGTCAAATgcatggcat
ggaccaggggtttaggtaccccctaagaaaataggtaccccctgaatttt
aggtacccccaaaaaaCAGACGTTCATAGAtaccccctgtgattggtacc
ccctgtgacttgagtatatgtcaagaaatgaaaaaattgtatattttgta
caattaaaaagaataatgatagttagataaaagcaagataaaatatagtt
cccaagcccccagaccttactgcataaaagttagatacccccagagatca
taggtaccccctgaaattcaaaaaaaatccagcccccagcctttttcagg
aagatattggttgtagcccccccccctgcgggctgggggggggttcatgc
catgaaatgtaatcgaatatttcaatttggaattCTGAggcttattggac
cattttttgaacttttggatcctcagatcttaTGGTCCTAAGTCTAAAgg
ctagcgttaaaactcagagtaaaaactccttccaacctaagttagagcgc
ttccaaagaCTTTGTGGGAATTTTTTATCGGTTACGAACTTGATTGTAGC
AACGTCAGTTTTTTGGCCATCAAAACCTTGACCAGGTCTCATTCGTGGGG
CCCCTCTCAAAAAAATCCTATTAATCTACCTTCGAACCAATCGAATGCGG
TTGCTTACCACGAAAGATGCTTCGGATCTTAAGGGTTAGCTCCCTACTAT
AGAAGAAATAAAAAGGATTAATGTGTGTGTTTTCAACGTAATAAAGGCCT
TCTGAACATTAGATAgacgttattttaacgtttctgaacattagatggac
gttTTTTTAACGTTTTGTGTCATTTAGTGAGGATGTCTATAAACAtgatg
ttcattcttttttgtcttttttaggcgTTCCATTTCTACTTATTGGCTCA
ACGACAATTGTATGAAGGAAGACCTGACGCCGCTTTGAGAACGGTATGTT
AACGATTCCAGGTGTTTCTCTGGAAGTTTATCATTCTATGACATAACCTT
TTTATACGGAACCACTCGCTGTTGCCATTAGTTTTACaatgttaaaagtt
cttccCTTTCAGACGGATTTCCGGCTCCGTGAAATATTAAAGAGGCTTTT
CcatctcaaaattctgcatataTGCATATATGCTTTTGTCCACTTTTGTC
CACTTTCCGTCCAAGACGAAAAACCttcttgctttgaccactggtTTTAG
TGTTACAAATTGCAACTACAAGTGTTACAAGATGCCCAACCAGTGTTTTT
TGGGTTTTCCGTATCAAAGATTACGTCCTCCAAAATTTGACAATAGTTTC
TAGCCCAATACGTCTTTTAAACAATGGGGAGATACGTTTTGGGTGGGACA
AAACAGAATTTCCTAGTTATCTGTGAAGTTTTACTGAGGTAAAAATCGAA
AATAGCACTTCAAAACCAGTAAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041197-exon-sc0002747-1491911889:8077..8444 | TCONS_00041197-exon-sc0002747-1491911889:8077..8444 | Clytia hemisphaerica | exon |
| TCONS_00041197-exon-sc0002747-1510915933:8077..8444 | TCONS_00041197-exon-sc0002747-1510915933:8077..8444 | Clytia hemisphaerica | exon |
| TCONS_00041197-exon-sc0002747-1575043694:8077..8444 | TCONS_00041197-exon-sc0002747-1575043694:8077..8444 | Clytia hemisphaerica | exon |
| TCONS_00041197-exon-sc0002747-1491911889:9651..10202 | TCONS_00041197-exon-sc0002747-1491911889:9651..10202 | Clytia hemisphaerica | exon |
| TCONS_00041197-exon-sc0002747-1510915933:9651..10202 | TCONS_00041197-exon-sc0002747-1510915933:9651..10202 | Clytia hemisphaerica | exon |
| TCONS_00041197-exon-sc0002747-1575043694:9651..10202 | TCONS_00041197-exon-sc0002747-1575043694:9651..10202 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002747 | supercontig | sc0002747:8077..10202 + |
Blast
The following BLAST results are available for this feature:
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