TCONS_00041195 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041195
Unique NameTCONS_00041195
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1183

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041195 ID=TCONS_00041195|Name=TCONS_00041195|organism=Clytia hemisphaerica|type=transcript|length=1183bp
AAGATTCGCTCACCAAAGGAAACAGACGAAACTATCGAATTGCTTACTTT
GGCTGCTTCAAACCCTGATGTTATTGGCAACCTTCAATTTAGCCCCCATG
TGAAGTTTGTTGTGTACACACAATGCAGTTTAGAGCACATCCAGGAAATG
TGTACGGTTTCTGGGAACCTACTGAGTGTCTTCCAAATTGATAAGACATC
CCAGATTGGCGATTTCTTTGTCACCAGTACATGCTACCAGTTTGGAAAAG
TACGCAGACGTGATAATGGTAAATACCTTGGATACCTGGGCCTGCTGTAT
TCCATATCAAAGAGGATCAATCAATTCACAGTCACTTGGCCTCCACGATG
AAGCAAAAGAATCCAGCCATGAAAaatatccttttcattggaatgGACAG
AGAAAAAGCCATTAGCAATGGTTTGTTGGCAGAAGTCCCCTTTGCCAATC
TCTTGTACTGCAAAAAGCATATGGAGGATGATATTTCCTTGAAGATGTCA
AAGCTGAAGCTGGACTCATTGGCGAAAAAGATTATTCTTCAAGATATTTT
TGGAAACTCATCATCTCAGGTTTTGGGATAGGTTGATTGTGAGGATGCTG
CTGATTTATTTCCACGGATGCCTGATACATATGCTAAATGTAACAAACTC
ACCAAAAGTGAAGAGTTTTCCAATTACTTCGAAACGTACATCCTTCAAAA
TTTTGCCCATGGATGTTTGGCTGGGGTTAGAAGAAGCGCAGGCCttggtg
aaaacttcttttATACCAATGCAATTGAATCTACCCACAAGAAATTCAAG
ACATACATTAAGCAAGATAAGATGGACAACCAGATTTCTGGAATGATTAA
TCCAAAATCTTCTTGGACTGAAGCTGCTTTAAAATATGTTGAAATGATTG
CTGTTCATCATAGGAATTTGGAGCGTGCTTTGATGGACCAAGGGATATAT
GAACTTGCTCCAGATTTCCAGCATCTTTTAATCGACAAGGATAAAATGGC
TAACATGACAGATGAGCAGATCAACACGAAAAAGGCACAATTCTGTGGAA
AGTTTCCAGTCATGTACAAGAAGTCTTCTGGAAAGGAAACTGGCCTTGCT
GCATCAATTGCCACCGCACCAACTGCCACCACACCAATTGCCACCGCACC
AAATACAGGTCACGTGACTAATCTTTGTAATGC
Run BLAST on NCBI

protein sequence of TCONS_00041195-protein

>TCONS_00041195-protein ID=TCONS_00041195-protein|Name=TCONS_00041195-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MPDTYAKCNKLTKSEEFSNYFETYILQNFAHGCLAGVRRSAGLGENFFYT
NAIESTHKKFKTYIKQDKMDNQISGMINPKSSWTEAALKYVEMIAVHHRN
LERALMDQGIYELAPDFQHLLIDKDKMANMTDEQINTKKAQFCGKFPVMY
KKSSGKETGLAASIATAPTATTPIATAPNTGHVTNLCN
Run BLAST on NCBI

transcript from alignment at sc0002746:15191..17774-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041195 ID=TCONS_00041195|Name=TCONS_00041195|organism=Clytia hemisphaerica|type=transcript|length=2584bp|location=Sequence derived from alignment at sc0002746:15191..17774- (Clytia hemisphaerica)
AAGATTCGCTCACCAAAGGAAACAGACGAAACTATCGAATTGCTTACTTT
GGCTGCTTCAAACCCTGATGTTATTGGCAACCTTCAATTTAGCCCCCATG
TGAAGTTTGTTGTGTACACACAATGCAGTTTAGAGCACATCCAGGAAATG
TGTACGGTTTCTGGGAACCTACTGAGTGTCTTCCAAATTGATAAGACATC
CCAGATTGGCGATTTCTTTGTCACCAGTACATGCTACCAGTTTGGAAAAG
TACGCAGACGTGATAATGGTAAATACCTTGGATACCTGGGCCTGCTGTAT
TCCATATCAAAGAGGATCAATCAATTCACAGTCACTTGGCCTCCACGATG
AAGCAAAAGAATCCAGCCATGAAAAATATCCTTTTCATTGGAATGGACAG
AGAAAAAGCCATTAGCAATGGTTTGTTGGCAGAAGTCCCCTTTGCCAATC
TCTTGTACTGCAAAAAGCATATGGAGGATGATATTTCCTTGAAGATGTCA
AAGCTGAAGCTGGACTCATTGGCGAAAAAGATTATTCTTCAAGATATTTT
TGGAAACTCATCATCTCAGGTAATGAATGCGTTTCCTTAGTAAGTATCTA
TTATTAATTTTTGTGTGGACTAAATTTAAAATCAAATCAGCCTGTTTTTC
ATCCAATTTCATTTTACAATTTTAAAAATTTGGCGTGGTGTGAACAGAGG
CTGAGTCTAAATTAATCCACATGAAAATTAAATCACAATACCAATAAAGA
TACCAAATGTTTGGGTCTATTGTTTATCATTTTCAATAAAACCATTCCTT
ATTTGTTTTTTTAACTATATTTTTGTAGAGGGGTTAAAACCCTAAAGTCA
GAGTTTGAATCCCCACAAAGCTATGTATCACTAAATAACGTTTTCAGGCT
CAGATTTAAATATGTGTATCTGCTTTGCAATTAGGGAATAAGCTAATGCG
AATTTGGCCCTTTATAGCAAAATTAAATTTCACAAATAACAACACATTCA
TTAATTCCACAAAACATAAATAAAGCTATTTGCATTAACTTATTCCGCAT
TAAATTTAATTATTCCCAACCAATCAGTTAGGTCTTCAGGAGAAATTGCA
GTGGTGCATATTATGAAGTGAACACAAAGTGATTAAATTCTTCTTTCATT
CAGGTTTTGGGATAGGTTGATTGTGAGGATGCTGCTGATTTATTTCCACG
GATGCCTGATACATATGCTAAATGTAACAAACTCACCAAAAGTGAAGAGT
TTTCCAATTACTTCGAAACGTACATCCTTCAAAATTTTGCCCATGGATGT
TTGGCTGGGGTTAGAAGAAGCGCAGGCCTTGGTGAAAACTTCTTTTATAC
CAATGCAATTGAATCTACCCACAAGAAATTCAAGACATACATTAAGCAAG
ATAAGATGGACAACCAGATTTCTGGAATGATTAATCCAAAATCTTCTTGG
ACTGAAGCTGCTTTAAAATATGTTGAAATGATTGCTGTTCATCATAGGAA
TTTGGAGCGTGCTTTGATGGACCAAGGTAACTGGATTTGCATAAATATAA
GCACTTGAAAGGGAGGGTGCCAGATTTTCAAAAGTATAAATTTTTAGGTC
TAATTTTAGCCAAAAAACTGCTATCAAACTTTAAAAGCCAGTTAAAATAT
TCGGAAATAGAGCAGGTTAGAGTTGGCTCCCTAGGGTTCTGCACTTGAAG
TGATCATCAGGTTAGTAGAAAGAAAATCTTATCCTGTATAAATACTCTTT
TCAGGGATATATGAACTTGCTCCAGATTTCCAGCATCTTTTAATCGACAA
GGATAAAATGGCTAACATGACAGATGAGCAGATCAACACGAAAAAGGCAC
AATTCTGTGGAAAGTTTCCAGTCATGTACAAGAAGTCTTCTGGAAAGGAA
ACTGGTATGATCTGAAATGTTTAGTTTGAACTTGCTTTCTATTGTTTCAA
AGACCATTTCTGAGAATTTTAAGTCCCGATGTCCACTTATGAAGCGCACA
TATCTTTTCAACGCTACTTTTAACGTCATAGGTTACACAAAGTGGCCTTG
AGTGTACTTTAGTATAACGCTATGCTTATAAAAAGAAAAGCCTTTGTATT
GTCAAAGGAAATGAACACATTGAACTTATCTTTTGATATATGTTTCTAGA
AGATTTTTAATTTGAATTTTCTCGTTTAGGTCTTGCTGCATCAATTGCCA
CCGCACCAACTGCCACCAGACCAATTGCCACCGCACCAAACACAGGACAC
ATAACTAATCTTTGTAGTGCTGGAAATGGTAAGAATCTCTATTTTGCTTT
TTGTTTAGGTTATTGGCAAATGTACCAAATTTTCATTCCCCTCCCCTATC
TTTTCACTCTTTCAAAATTGGAAAATTGGTTTCCCCCTTTGGAGAACACT
ATATGTTTTTATGATCATAAAAAATAAATACATTGAACTTATCTTTTGAT
ATCCAGTTTCCAGAAGATTTTTAATTTGATTTTTCTCGTTTAGGCCTTGC
TGCATCAATTGCCACCGCACCAACTGCCACCACACCAATTGCCACCGCAC
CAAATACAGGTCACGTGACTAATCTTTGTAATGC

Coding sequence (CDS) from alignment at sc0002746:15191..17774-

>TCONS_00041195 ID=TCONS_00041195|Name=TCONS_00041195|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at sc0002746:15191..17774- (Clytia hemisphaerica)
GCCTTGCTGCATCAATTGCCACCGCACCAACTGCCACCACACCAATTGCC
ACCGCACCAAATACAGGTCACGTGACTAATCTTTGTAATGGATATATGAA
CTTGCTCCAGATTTCCAGCATCTTTTAATCGACAAGGATAAAATGGCTAA
CATGACAGATGAGCAGATCAACACGAAAAAGGCACAATTCTGTGGAAAGT
TTCCAGTCATGTACAAGAAGTCTTCTGGAAAGGAAACTGATGCCTGATAC
ATATGCTAAATGTAACAAACTCACCAAAAGTGAAGAGTTTTCCAATTACT
TCGAAACGTACATCCTTCAAAATTTTGCCCATGGATGTTTGGCTGGGGTT
AGAAGAAGCGCAGGCCTTGGTGAAAACTTCTTTTATACCAATGCAATTGA
ATCTACCCACAAGAAATTCAAGACATACATTAAGCAAGATAAGATGGACA
ACCAGATTTCTGGAATGATTAATCCAAAATCTTCTTGGACTGAAGCTGCT
TTAAAATATGTTGAAATGATTGCTGTTCATCATAGGAATTTGGAGCGTGC
TTTGATGGACCAAGGCCTTGCTGCATCAATTGCCACCGCACCAACTGCCA
CCACACCAATTGCCACCGCACCAAATACAGGTCACGTGACTAATCTTTGT
AATGGATATATGAACTTGCTCCAGATTTCCAGCATCTTTTAATCGACAAG
GATAAAATGGCTAACATGACAGATGAGCAGATCAACACGAAAAAGGCACA
ATTCTGTGGAAAGTTTCCAGTCATGTACAAGAAGTCTTCTGGAAAGGAAA
CTGATGCCTGATACATATGCTAAATGTAACAAACTCACCAAAAGTGAAGA
GTTTTCCAATTACTTCGAAACGTACATCCTTCAAAATTTTGCCCATGGAT
GTTTGGCTGGGGTTAGAAGAAGCGCAGGCCTTGGTGAAAACTTCTTTTAT
ACCAATGCAATTGAATCTACCCACAAGAAATTCAAGACATACATTAAGCA
AGATAAGATGGACAACCAGATTTCTGGAATGATTAATCCAAAATCTTCTT
GGACTGAAGCTGCTTTAAAATATGTTGAAATGATTGCTGTTCATCATAGG
AATTTGGAGCGTGCTTTGATGGACCAAGGCCTTGCTGCATCAATTGCCAC
CGCACCAACTGCCACCACACCAATTGCCACCGCACCAAATACAGGTCACG
TGACTAATCTTTGTAATGGATATATGAACTTGCTCCAGATTTCCAGCATC
TTTTAATCGACAAGGATAAAATGGCTAACATGACAGATGAGCAGATCAAC
ACGAAAAAGGCACAATTCTGTGGAAAGTTTCCAGTCATGTACAAGAAGTC
TTCTGGAAAGGAAACTGATGCCTGATACATATGCTAAATGTAACAAACTC
ACCAAAAGTGAAGAGTTTTCCAATTACTTCGAAACGTACATCCTTCAAAA
TTTTGCCCATGGATGTTTGGCTGGGGTTAGAAGAAGCGCAGGCCTTGGTG
AAAACTTCTTTTATACCAATGCAATTGAATCTACCCACAAGAAATTCAAG
ACATACATTAAGCAAGATAAGATGGACAACCAGATTTCTGGAATGATTAA
TCCAAAATCTTCTTGGACTGAAGCTGCTTTAAAATATGTTGAAATGATTG
CTGTTCATCATAGGAATTTGGAGCGTGCTTTGATGGACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025198XLOC_025198Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041195-proteinTCONS_00041195-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041195-exon-sc0002746-1575043694:17206..17774TCONS_00041195-exon-sc0002746-1575043694:17206..17774Clytia hemisphaericaexon
TCONS_00041195-exon-sc0002746-1575043694:16249..16621TCONS_00041195-exon-sc0002746-1575043694:16249..16621Clytia hemisphaericaexon
TCONS_00041195-exon-sc0002746-1575043694:15871..16020TCONS_00041195-exon-sc0002746-1575043694:15871..16020Clytia hemisphaericaexon
TCONS_00041195-exon-sc0002746-1575043694:15191..15281TCONS_00041195-exon-sc0002746-1575043694:15191..15281Clytia hemisphaericaexon
TCONS_00041195-exon-sc0002746-1510915933:17206..17774TCONS_00041195-exon-sc0002746-1510915933:17206..17774Clytia hemisphaericaexon
TCONS_00041195-exon-sc0002746-1510915933:16249..16621TCONS_00041195-exon-sc0002746-1510915933:16249..16621Clytia hemisphaericaexon
TCONS_00041195-exon-sc0002746-1510915933:15871..16020TCONS_00041195-exon-sc0002746-1510915933:15871..16020Clytia hemisphaericaexon
TCONS_00041195-exon-sc0002746-1510915933:15191..15281TCONS_00041195-exon-sc0002746-1510915933:15191..15281Clytia hemisphaericaexon
TCONS_00041195-exon-sc0002746-1491911889:17206..17774TCONS_00041195-exon-sc0002746-1491911889:17206..17774Clytia hemisphaericaexon
TCONS_00041195-exon-sc0002746-1491911889:16249..16621TCONS_00041195-exon-sc0002746-1491911889:16249..16621Clytia hemisphaericaexon
TCONS_00041195-exon-sc0002746-1491911889:15871..16020TCONS_00041195-exon-sc0002746-1491911889:15871..16020Clytia hemisphaericaexon
TCONS_00041195-exon-sc0002746-1491911889:15191..15281TCONS_00041195-exon-sc0002746-1491911889:15191..15281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002746supercontigsc0002746:15191..17774 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.289235	0.044089	0.0412723	1.5742	1.36915	0.995978	0.679326	0.501457	1.00997	0.891845	0.690215	0.938892	0.515017	0.104454	0.192581	0	0.201937	0.397407	0.215637	0.249511	0.0827437	0	0.108787	0.579101	1.03542	0	0.128358	0.0909011	0.0862109
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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