TCONS_00041168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041168
Unique NameTCONS_00041168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041168 ID=TCONS_00041168|Name=TCONS_00041168|organism=Clytia hemisphaerica|type=transcript|length=448bp
NNGAAAACCCCCTAAAACGTGTTTTGAGAAAACGGCGCAGAAAGTTAAAA
ATAgaggtttttctcaatttttctgcgatacatagaccgttttataaaat
ttttgctgtggttgaccaaaatggattgacacataacttttaatgttgaa
aaggtactggaaatactaaaatagtccaagttttttgaaaaaaatggcct
tCCATGTGCTCCGGGAATCTCCAAGTATTTTGCGTCAACTCTGCGTACAA
CGCGTAAACATGGctttaagtcaataaaagtgtattttctcatcaaaaaa
caTATTGCCAACAAAATATATCATCCTTGTGCTCTCTCAAATCTTTTTAT
ATCATTTACAGTTGAATTTCAGTGTTGATCTTAGGGAAACGTGTCTTCAG
GTTGAACGTCAATCATGCAtagttttactcaattttccagGATCGCCT
Run BLAST on NCBI

transcript from alignment at sc0002730:11832..12521-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041168 ID=TCONS_00041168|Name=TCONS_00041168|organism=Clytia hemisphaerica|type=transcript|length=690bp|location=Sequence derived from alignment at sc0002730:11832..12521- (Clytia hemisphaerica)
NNGAAAACCCCCTAAAACGTGTTTTGAGAAAACGGCGCAGAAAGTTAAAA
ATAGAGGTTTTTCTCAATTTTTCTGCGATACATAGACCGTTTTATAAAAT
TTTTGCTGTGGTTGACCAAAATGGATTGACACATAACTTTTAATGTTGAA
AAGGTACTGGAAATACTAAAATAGTCCAAGTTTTTTGAAAAAAAATGGCC
TTCCACGTGCTCCGGGAATCTCCAAGTATTTTGCGTCAACTCTGCGTACA
ACGCGTAAACAGTCGTAAACATGGCTTTAAGTCAATAAAAGTGCATTTTC
TCATCAAAAAAACTATTGCCAACAAAATATATCATCCTTGTGCTCTCTCA
AATCNGACCAAAATGGATTGACACATAACTTTTAATGTTGAAAAGGTACT
GGAAATACTAAAATAGTCCAAGTTTTTTGAAAAAAATGGCCTTCCATGTG
CTCCGGGAATCTCCAAGTATTTTGCGTCAACTCTGCGTACAACGCGTAAA
CATGGCTTTAAGTCAATAAAAGTGTATTTTCTCATCAAAAAACATATTGC
CAACAAAATATATCATCCTTGTGCTCTCTCAAATCTTTTTATATCATTTA
CAGTTGAATTTCAGTGTTGATCTTAGGGAAACGTGTCTTCAGGTTGAACG
TCAATCATGCATAGTTTTACTCAATTTTCCAGGATCGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025174XLOC_025174Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041168-exon-sc0002730-1575043694:12369..12521TCONS_00041168-exon-sc0002730-1575043694:12369..12521Clytia hemisphaericaexon
TCONS_00041168-exon-sc0002730-1575043694:11832..12126TCONS_00041168-exon-sc0002730-1575043694:11832..12126Clytia hemisphaericaexon
TCONS_00041168-exon-sc0002730-1510915933:12369..12521TCONS_00041168-exon-sc0002730-1510915933:12369..12521Clytia hemisphaericaexon
TCONS_00041168-exon-sc0002730-1510915933:11832..12126TCONS_00041168-exon-sc0002730-1510915933:11832..12126Clytia hemisphaericaexon
TCONS_00041168-exon-sc0002730-1491911889:12369..12521TCONS_00041168-exon-sc0002730-1491911889:12369..12521Clytia hemisphaericaexon
TCONS_00041168-exon-sc0002730-1491911889:11832..12126TCONS_00041168-exon-sc0002730-1491911889:11832..12126Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002730supercontigsc0002730:11832..12521 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78869	1.24858	1.81566	0	13.1971	2.47955	16.0435	10.1016	2.12615	1.53164	0	1.96806	2.65752	0	2.44811	0.441318	0	0.594586	2.14289	0.682942	4.28553	6.44201	1.81166	4.33822	1.69892	5.08825	4.88771	8.49741	6.574	4.18149
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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