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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041164 ID=TCONS_00041164|Name=TCONS_00041164|organism=Clytia hemisphaerica|type=transcript|length=744bp
ACACAATAACACCCGTAGCCCACTTGGTTATTATTACATTCTAataatca
taaataaaaaatattgaaattaaccaatcagctTGTTTCatctgttttca
ttttcatagaTTATCTAAATGAAGAATGGATATCAAAAGCCCAACAATTA
AGAAAGGTCGAGGACGAGGACGTGGTGTTTTAGCATTAACTTCTTTTGAG
CCATTACCTCGTCCTAATAAAACACTACAATCTAACAACAAGCCATTAAA
TAACATAACTAACAATGATCAAAAAGTTAATGGTAACCAAAAACCAACAA
AGGATATTCGATCAAATGTAACAGTACATAAAATCAACACGCCAAACAAA
CATGATATTGACGGACTTCAAATATTGGCAAAGTATAATTTCACGGGAAA
CCCTGACAAACCAGGTGGTTTTGAAGAGTTGTGTATGAAACAAGGTGACA
AGTTAACGTTACTCAACAAAGGTCATGCTCCAAGTGGAAATTATCTCTGG
TGGGAAGTTCGAAATGACGATGGCAAACAAGGCTTCGTGCCTGCTAATTA
CTGTTTGGTAAGGTTCATGCCGACCTCTTAGGCTTCAACTTTAATATCAA
TATTTTATGTACCCTCTTATCAGAGTTTTTACCCAATTTTGCACACCACT
TTCAAAGACAAATAACTGTAACTTTATTTATCTGAGAAAGAATCGAAAAA
TCTgaatcaaagttttcaaaagatttcaaaaatcctAATCGAAT Run BLAST on NCBI protein sequence of TCONS_00041164-protein >TCONS_00041164-protein ID=TCONS_00041164-protein|Name=TCONS_00041164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MDIKSPTIKKGRGRGRGVLALTSFEPLPRPNKTLQSNNKPLNNITNNDQK
VNGNQKPTKDIRSNVTVHKINTPNKHDIDGLQILAKYNFTGNPDKPGGFE
ELCMKQGDKLTLLNKGHAPSGNYLWWEVRNDDGKQGFVPANYCLVRFMPT
S Run BLAST on NCBI transcript from alignment at sc0002728:8064..10513- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041164 ID=TCONS_00041164|Name=TCONS_00041164|organism=Clytia hemisphaerica|type=transcript|length=2450bp|location=Sequence derived from alignment at sc0002728:8064..10513- (Clytia hemisphaerica)
ACACAATAACACCCGTAGCCCACTTGGTTATTATTACATTCTAATAATCA
TAAATAAAAAATATTGAAATTAACCAATCAGCTTGTTTCATCTGTTTTCA
TTTTCATAGATTATCTAAATGAAGAATGGATATCAAAAGCCCAACAATTA
AGAAAGGTCGAGGACGAGGACGTGGTGTTTTAGCATTAACTTCTTTTGAG
CCATTACCTCGTCCTAATAAAACACTACAATCTAACAACAAGCCATTAAA
TAACATAACTAACAATGATCAAAAAGTTAATGGTAACCAAAAACCAACAA
AGGATATTCGATCAAATGTAACAGTACATAAAATCAACACGCCAAACAAA
CATGATATTGACGGTATGCCATATTATATTTTTTAGATTGCTTTGTGCCA
GGGGGGCGGTAGTAAAATCTCAGACATAATGACGTTTACTACGGTGGTGG
TGTGACGAAAAATCGAAAAAAAACTACCCAGGGTAGTTAAATACTAAAAT
GGGAGGTATCTATGTGTTAAATGTTGAAAAAATGTTACTACCTGGATAGT
TAAAANGAAAAAAAACTACCCAGGGTAGTTAAATACTAAAATGGGAGGTA
TCTATGTGTTAAATGTTGAAAAAATGTTACTACCTGGATAGTTAAAACTG
GTAAAATTACCAAATTTTAGCTATCTTTTGTAATCCTTTAATTATGACTT
TTCTGAAAAAAACTGAAAATTTTTATAATTTGAAAACATTTTCTGTTGGA
AAGTTGTTTGCTGCAAACATAATTCTCGAAATTTTTTGTCAATATAAAAA
ATACTTTTATTTAATTCTAAGGGCAAAACATTAATTTTTGCACTACATGA
AAAATGTGTCACAGAAATAATCATTTTTTAGCTTTTTTTTGCAAAATCAG
TCCGAAAAGCAACCAAAAAATAGGTGGTCTCCATGACAAATTGTCCCAAA
GATTTTACTACCGACCCCCCCCCCCTGTTTGTGCTTCAAGCATAATATTG
AACCTGATTTCTGATTAAACTTTTTAAGGTAGCTGGGTTTTCGAGTTAGC
TAAATTATGACGTCATAAAAGTGCAAATTATGACGTCACTCGACTCTAAC
TCGATTTTTTATTTTCAAAAAAGTTTTTTTTCGAGTTAAGGCTTGGGGAC
CCGAGAAGTTTTTTTCGTGTTGGTGCAATGCAACATGCTCCATCCCACCA
ACACAAGAAAAAAGTGCATGTGTCATGGTTTCTTTTTTTTGTTTCATGGG
ACAAAAAGTGAGGGAAATACCCAAAAGACATTTGATTGATTTTGTCCCTG
CAGGAACAACAAGTGAGAGAAGCACGAATGTTATGAAAAGAGAAATTGGG
TGGAGACACGAGAAAGCGTTTCAGGTTGGTGGGATGGATGGGATGGAGCA
TATTACATTGCACCAACGCGAAAAAAACTTCTGGTGTTCCCAAGCCTTTA
GAATCAACTCAATTTTTTTTCCCAAAAACCTTTTTTCGATTTAGCTAACT
CGGATTTTATCGCAGAAAAAATATTTATAACTATTATAACTATTATTCGA
ATTTGCTTACTCTAACTAAGTCTGGTAAGAACTCAATCTCGTTACTAGGG
TCACTCGCAAAACTTTTTTAATTTTACAAATGAATTGAATTCGGATTCGA
AAATTAACAAACATAAATTAATAATATTGGCCGTTTTGCCAATACAACAC
ACAAAAAAAGTTAACTTTTTGGGAAAAAATCCAAGATTGAACGAAAAATA
AACTCCGAGTTAGATAACTGGAAAAAAGGTTTTGTGAAACAAATTCGAGT
TAGCTTGAAAAAGTTCATAAGGTCATATAAATCAACCTAGCTTAAATAGC
AGATTGTACTTTCTTGATAAGTTTTTTATTAAATGAGAGGATCTAACTAA
GTAACAAAGAACTCAAAAGTAGTATAGTTATTAAAACCTTAATCATTAAT
TCATTCAGATACGGCTATAGAAAGGTTTTGCATCAAAAATTAGTCTCTTA
TCTCTTAGTAGCAAAAAGTATTTTTATCTTTGCTTTAGAAAGGTTATTTT
ATCTTTTTATCGCCGCCAGGACTTCAAATATTGGCAAAGTATAATTTCAC
GGGAAACCCTGACAAACCAGGTGGTTTTGAAGAGTTGTGTATGAAACAAG
GTGACAAGTTAACGTTACTCAACAAAGGTCATGCTCCAAGTGGAAATTAT
CTCTGGTGGGAAGTTCGAAATGACGATGGCAAACAAGGCTTCGTGCCTGC
TAATTACTGTTTGGTAAGGTTCATGCCGACCTCTTAGGCTTCAACTTTAA
TATCAATATTTTATGTACCCTCTTATCAGAGTTTTTACCCAATTTTGCAC
ACCACTTTCAAAGACAAATAACTGTAACTTTATTTATCTGAGAAAGAATC
GAAAAATCTGAATCAAAGTTTTCAAAAGATTTCAAAAATCCTAATCGAAT
Coding sequence (CDS) from alignment at sc0002728:8064..10513- >TCONS_00041164 ID=TCONS_00041164|Name=TCONS_00041164|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at sc0002728:8064..10513- (Clytia hemisphaerica)
GACTTCAAATATTGGCAAAGTATAATTTCACGGGAAACCCTGACAAACCA
GGTGGTTTTGAAGAGTTGTGTATGAAACAAGGTGACAAGTTAACGTTACT
CAACAAAGGTCATGCTCCAAGTGGAAATTATCTCTGGTGGGAAGTTCGAA
ATGACGATGGCAAACAAGGCTTCGTGCCTGCTAATTACTGTTTGGTAAGG
TTCATGCCGACCTCTTAGATGGATATCAAAAGCCCAACAATTAAGAAAGG
TCGAGGACGAGGACGTGGTGTTTTAGCATTAACTTCTTTTGAGCCATTAC
CTCGTCCTAATAAAACACTACAATCTAACAACAAGCCATTAAATAACATA
ACTAACAATGATCAAAAAGTTAATGGTAACCAAAAACCAACAAAGGATAT
TCGATCAAATGTAACAGTACATAAAATCAACACGCCAAACAAACATGATA
TTGACGGACTTCAAATATTGGCAAAGTATAATTTCACGGGAAACCCTGAC
AAACCAGGTGGTTTTGAAGAGTTGTGTATGAAACAAGGTGACAAGTTAAC
GTTACTCAACAAAGGTCATGCTCCAAGTGGAAATTATCTCTGGTGGGAAG
TTCGAAATGACGATGGCAAACAAGGCTTCGTGCCTGCTAATTACTGTTTG
GTAAGGTTCATGCCGACCTCTTAGATGGATATCAAAAGCCCAACAATTAA
GAAAGGTCGAGGACGAGGACGTGGTGTTTTAGCATTAACTTCTTTTGAGC
CATTACCTCGTCCTAATAAAACACTACAATCTAACAACAAGCCATTAAAT
AACATAACTAACAATGATCAAAAAGTTAATGGTAACCAAAAACCAACAAA
GGATATTCGATCAAATGTAACAGTACATAAAATCAACACGCCAAACAAAC
ATGATATTGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041164-exon-sc0002728-1575043694:10151..10513 | TCONS_00041164-exon-sc0002728-1575043694:10151..10513 | Clytia hemisphaerica | exon |
| TCONS_00041164-exon-sc0002728-1575043694:8064..8444 | TCONS_00041164-exon-sc0002728-1575043694:8064..8444 | Clytia hemisphaerica | exon |
| TCONS_00041164-exon-sc0002728-1510915933:10151..10513 | TCONS_00041164-exon-sc0002728-1510915933:10151..10513 | Clytia hemisphaerica | exon |
| TCONS_00041164-exon-sc0002728-1510915933:8064..8444 | TCONS_00041164-exon-sc0002728-1510915933:8064..8444 | Clytia hemisphaerica | exon |
| TCONS_00041164-exon-sc0002728-1491911889:10151..10513 | TCONS_00041164-exon-sc0002728-1491911889:10151..10513 | Clytia hemisphaerica | exon |
| TCONS_00041164-exon-sc0002728-1491911889:8064..8444 | TCONS_00041164-exon-sc0002728-1491911889:8064..8444 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002728 | supercontig | sc0002728:8064..10513 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001452 | SH3_domain |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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