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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041147 ID=TCONS_00041147|Name=TCONS_00041147|organism=Clytia hemisphaerica|type=transcript|length=1658bp
ggAGAACAAAAAATAACCAACAATACAGTTATAAAACATGAAGGTTGGGT
CGCTCTTTTTCATATCCACCATTTTATCAATCTCCTTACCTATGAACACA
CTATCCTTTATCGTTTTGGTTCGCGGTCGACGGAGATTCAAGCGCCAATG
GTTCACACTGATCAATTTGATAATCGTTCATctaattcaaacattttttc
atttaccGCTGCTCATTTATAATACGGTGAATTCCCAATGGATGTTCTCG
GAAGATTTTTGTCAACTGGATGCTTTTGTCATGGCTGTGGCCGGCTTTGA
GATTATTTTCACACATCTCGTAATAAGTATCGAAAGGTTCATCAAATTGA
AATACCCAATGAGATACGAACAAGTCCTAAGTACCAATGTCTTGAAGTTT
GCTTCAGCAAGTACATGGCTGGTAGCCATTTTGTTTTCGTGCCCTCCAAT
GTTTGGCTGGTCGAAATATGTATTAGATGGTGGAGTGCATTGTGGGAACG
ACTTAGTGGAAAACGCGGGAAATATCAGTTATCTGTTAGTGTGTAGCATA
TTTGGTTTTCTTGTTCCTTACATTGCATCTATAACTCTAAGCATCAAATT
TCTTGTCGAAGTCAAACAAGTAGGTAAAATTTACCCTGTCAGCAAATCAA
TCAGCGTTTTTGTTATTACTTCAATGACAACATTTACAATAGCCTGGTTA
CCCTTGGTGGCGTGCATTATATTTAGCCTGACTGTCAAACGTTTGGAGCC
GTTTAATATGGAGGTGGTATCCATGGTTACCAAGATAACAATCATCACTG
ATACTCTGTTGTTTTTGTACTTAAAGAGAGACTTTCAAGAAGTGGCCAAA
AGAACTATATCGAGAATGAAAAGCGACAGTAttgtaaaattttcattttc
atcatcagGCTAGTTACAACTATCgtccgaccctgaaattccgaaaatcg
aaatcaaaataaaattattattggaagtacattttaattttgatcACAAA
TTTAGTATagcttttttcaagattttgagaattatatgttcaatttttca
ttttatccaggAATTTGACCTTtatgtgtctttttattttctattttgcg
attttgtcaaaatgtagtagtttttgctgccttttaaggaaattttataa
gtgaaattctacttttatttttattttttctccgaccgaccgaccctctt
ttttaggaagcttggcccgtaaaacaacaaattagatTGACCTTGCctta
aaagaaagaaagttaAACGTATCATCTTAAatacaattgaaaattttata
taggaaaaaattattatagAACAGTAGAAGTAGAAAATTGCAGCAAATTC
TAATTGTACATAGAAATCTTTTTGTGTTTACGTAGTGTAAATTTTTATTA
TGTAGTGTAATGTTTTAGAAATATTATATGTTCGATGAATGCAAGTCAAT
CTCGACGAAAGAGCTCTTTacacttatctgatattccggtGGCGGATTGc
agccgcccacgctaaagctctaaagggagcgggccaatttcccatctAAG
AGGAATGATAGTCGGCATTTGATGTGCCGCATCCTCAGTCGGGTTCAACA
GTCCTTGCCCGTAAACCTAGAAATATTTCGGTTGGACCCGCCAATCCCCG
AAAACGAG Run BLAST on NCBI protein sequence of opsin 9 >TCONS_00041147-protein ID=TCONS_00041147-protein|Name=opsin 9|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MKVGSLFFISTILSISLPMNTLSFIVLVRGRRRFKRQWFTLINLIIVHLI
QTFFHLPLLIYNTVNSQWMFSEDFCQLDAFVMAVAGFEIIFTHLVISIER
FIKLKYPMRYEQVLSTNVLKFASASTWLVAILFSCPPMFGWSKYVLDGGV
HCGNDLVENAGNISYLLVCSIFGFLVPYIASITLSIKFLVEVKQVGKIYP
VSKSISVFVITSMTTFTIAWLPLVACIIFSLTVKRLEPFNMEVVSMVTKI
TIITDTLLFLYLKRDFQEVAKRTISRMKSDSIVKFSFSSSG Run BLAST on NCBI transcript from alignment at sc0002720:8703..10849- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041147 ID=TCONS_00041147|Name=TCONS_00041147|organism=Clytia hemisphaerica|type=transcript|length=2147bp|location=Sequence derived from alignment at sc0002720:8703..10849- (Clytia hemisphaerica)
GGAGAACAAAAAATAACCAACAATACAGTTATAAAACATGAAGGTTGGGT
CGCTCTTTTTCATATCCACCATTTTATCAATCTCCTTACCTATGAACACA
CTATCCTTTATCGTTTTGGTTCGCGGTCGACGGAGATTCAAGCGCCAATG
GTTCACACTGATCAATTTGATAATCGTTCATCTAATTCAAACATTTTTTC
ATTTACCGCTGCTCATTTATAATACGGTGAATTCCCAATGGATGTTCTCG
GAAGATTTTTGTCAACTGGATGCTTTTGTCATGGCTGTGGCCGGCTTTGA
GATTATTTTCACACATCTCGTAATAAGTATCGAAAGGTAAAAATCATTTG
CTATACCCTCAGTAAATATTTATGTAGACTTTGCTCTTTTATGTTAGTAA
GTTAGCGACTAAGGACTCTTTTTCTTTTACTCTAACGTCCAAGGTTCCGA
ATAGTAGGGGGTCCTAACACAATTGGGGGGGGGGGGGGGCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGGGGGGGGGGGGGGGTGGTCCGATTTTTTTTCAAATATAATAAACG
GGAGTGACCTTAATTGCCGGGAGTCGGAAATTGTACCTTCAAAGACCCCC
AAAATAAAGTAATTATATACTAAACCCAGGCATTTAGAGCGATTCAGTTT
TTGATAGCTGAAAATTTTCAAAAATAAAAAAAACGAGCGGGGAGTCCTTA
TAAAAAATCATAACCAGATGGTGATGTTTATTCGGAGAAGCAGTCTAGCT
GAAGGTTACTCTTCTTTGTTTTTAGGTTCATCAAATTGAAATACCCAATG
AGATACGAACAAGTCCTAAGTACCAATGTCTTGAAGTTTGCTTCAGCAAG
TACATGGCTGGTAGCCATTTTGTTTTCGTGCCCTCCAATGTTTGGCTGGT
CGAAATATGTATTAGATGGTGGAGTGCATTGTGGGAACGACTTAGTGGAA
AACGCGGGAAATATCAGTTATCTGTTAGTGTGTAGCATATTTGGTTTTCT
TGTTCCTTACATTGCATCTATAACTCTAAGCATCAAATTTCTTGTCGAAG
TCAAACAAGTAGGTAAAATTTACCCTGTCAGCAAATCAATCAGCGTTTTT
GTTATTACTTCAATGACAACATTTACAATAGCCTGGTTACCCTTGGTGGC
GTGCATTATATTTAGCCTGACTGTCAAACGTTTGGAGCCGTTTAATATGG
AGGTGGTATCCATGGTTACCAAGATAACAATCATCACTGATACTCTGTTG
TTTTTGTACTTAAAGAGAGACTTTCAAGAAGTGGCCAAAAGAACTATATC
GAGAATGAAAAGCGACAGTATTGTAAAATTTTCATTTTCATCATCAGGCT
AGTTACAACTATCGTCCGACCCTGAAATTCCGAAAATCGAAATCAAAATA
AAATTATTATTGGAAGTACATTTTAATTTTGATCACAAATTTAGTATAGC
TTTTTTCAAGATTTTGAGAATTATATGTTCAATTTTTCATTTTATCCAGG
AATTTGACCTTTATGTGTCTTTTTATTTTCTATTTTGCGATTTTGTCAAA
ATGTAGTAGTTTTTGCTGCCTTTTAAGGAAATTTTATAAGTGAAATTCTA
CTTTTATTTTTATTTTTTCTCCGACCGACCGACCCTCTTTTTTAGGAAGC
TTGGCCCGTAAAACAACAAATTAGATTGACCTTGCCTTAAAAGAAAGAAA
GTTAAACGTATCATCTTAAATACAATTGAAAATTTTATATAGGAAAAAAT
TATTATAGAACAGTAGAAGTAGAAAATTGCAGCAAATTCTAATTGTACAT
AGAAATCTTTTTGTGTTTACGTAGTGTAAATTTTTATTATGTAGTGTAAT
GTTTTAGAAATATTATATGTTCGATGAATGCAAGTCAATCTCGACGAAAG
AGCTCTTTACACTTATCTGATATTCCGGTGGCGGATTGCAGCCGCCCACG
CTAAAGCTCTAAAGGGAGCGGGCCAATTTCCCATCTAAGAGGAATGATAG
TCGGCATTTGATGTGCCGCATCCTCAGTCGGGTTCAACAGTCCTTGCCCG
TAAACCTAGAAATATTTCGGTTGGACCCGCCAATCCCCGAAAACGAG Coding sequence (CDS) from alignment at sc0002720:8703..10849- >TCONS_00041147 ID=TCONS_00041147|Name=TCONS_00041147|organism=Clytia hemisphaerica|type=CDS|length=1752bp|location=Sequence derived from alignment at sc0002720:8703..10849- (Clytia hemisphaerica)
GTTCATCAAATTGAAATACCCAATGAGATACGAACAAGTCCTAAGTACCA
ATGTCTTGAAGTTTGCTTCAGCAAGTACATGGCTGGTAGCCATTTTGTTT
TCGTGCCCTCCAATGTTTGGCTGGTCGAAATATGTATTAGATGGTGGAGT
GCATTGTGGGAACGACTTAGTGGAAAACGCGGGAAATATCAGTTATCTGT
TAGTGTGTAGCATATTTGGTTTTCTTGTTCCTTACATTGCATCTATAACT
CTAAGCATCAAATTTCTTGTCGAAGTCAAACAAGTAGGTAAAATTTACCC
TGTCAGCAAATCAATCAGCGTTTTTGTTATTACTTCAATGACAACATTTA
CAATAGCCTGGTTACCCTTGGTGGCGTGCATTATATTTAGCCTGACTGTC
AAACGTTTGGAGCCGTTTAATATGGAGGTGGTATCCATGGTTACCAAGAT
AACAATCATCACTGATACTCTGTTGTTTTTGTACTTAAAGAGAGACTTTC
AAGAAGTGGCCAAAAGAACTATATCGAGAATGAAAAGCGACAGTATTGTA
AAATTTTCATTTTCATCATCAGGCTAGATGAAGGTTGGGTCGCTCTTTTT
CATATCCACCATTTTATCAATCTCCTTACCTATGAACACACTATCCTTTA
TCGTTTTGGTTCGCGGTCGACGGAGATTCAAGCGCCAATGGTTCACACTG
ATCAATTTGATAATCGTTCATCTAATTCAAACATTTTTTCATTTACCGCT
GCTCATTTATAATACGGTGAATTCCCAATGGATGTTCTCGGAAGATTTTT
GTCAACTGGATGCTTTTGTCATGGCTGTGGCCGGCTTTGAGATTATTTTC
ACACATCTCGTAATAAGTATCGAAAGGTTCATCAAATTGAAATACCCAAT
GAGATACGAACAAGTCCTAAGTACCAATGTCTTGAAGTTTGCTTCAGCAA
GTACATGGCTGGTAGCCATTTTGTTTTCGTGCCCTCCAATGTTTGGCTGG
TCGAAATATGTATTAGATGGTGGAGTGCATTGTGGGAACGACTTAGTGGA
AAACGCGGGAAATATCAGTTATCTGTTAGTGTGTAGCATATTTGGTTTTC
TTGTTCCTTACATTGCATCTATAACTCTAAGCATCAAATTTCTTGTCGAA
GTCAAACAAGTAGGTAAAATTTACCCTGTCAGCAAATCAATCAGCGTTTT
TGTTATTACTTCAATGACAACATTTACAATAGCCTGGTTACCCTTGGTGG
CGTGCATTATATTTAGCCTGACTGTCAAACGTTTGGAGCCGTTTAATATG
GAGGTGGTATCCATGGTTACCAAGATAACAATCATCACTGATACTCTGTT
GTTTTTGTACTTAAAGAGAGACTTTCAAGAAGTGGCCAAAAGAACTATAT
CGAGAATGAAAAGCGACAGTATTGTAAAATTTTCATTTTCATCATCAGGC
TAGATGAAGGTTGGGTCGCTCTTTTTCATATCCACCATTTTATCAATCTC
CTTACCTATGAACACACTATCCTTTATCGTTTTGGTTCGCGGTCGACGGA
GATTCAAGCGCCAATGGTTCACACTGATCAATTTGATAATCGTTCATCTA
ATTCAAACATTTTTTCATTTACCGCTGCTCATTTATAATACGGTGAATTC
CCAATGGATGTTCTCGGAAGATTTTTGTCAACTGGATGCTTTTGTCATGG
CTGTGGCCGGCTTTGAGATTATTTTCACACATCTCGTAATAAGTATCGAA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041147-exon-sc0002720-1575043694:10514..10849 | TCONS_00041147-exon-sc0002720-1575043694:10514..10849 | Clytia hemisphaerica | exon |
| TCONS_00041147-exon-sc0002720-1575043694:8703..10024 | TCONS_00041147-exon-sc0002720-1575043694:8703..10024 | Clytia hemisphaerica | exon |
| TCONS_00041147-exon-sc0002720-1510915933:10514..10849 | TCONS_00041147-exon-sc0002720-1510915933:10514..10849 | Clytia hemisphaerica | exon |
| TCONS_00041147-exon-sc0002720-1510915933:8703..10024 | TCONS_00041147-exon-sc0002720-1510915933:8703..10024 | Clytia hemisphaerica | exon |
| TCONS_00041147-exon-sc0002720-1491911889:10514..10849 | TCONS_00041147-exon-sc0002720-1491911889:10514..10849 | Clytia hemisphaerica | exon |
| TCONS_00041147-exon-sc0002720-1491911889:8703..10024 | TCONS_00041147-exon-sc0002720-1491911889:8703..10024 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002720 | supercontig | sc0002720:8703..10849 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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