TCONS_00041146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041146
Unique NameTCONS_00041146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041146 ID=TCONS_00041146|Name=TCONS_00041146|organism=Clytia hemisphaerica|type=transcript|length=694bp
CTTAGTCGCTAACTTACTAACATAAAAGAGCAAAGTCTACATAAATATTT
ACTGAGGGTATAGCAAATGATTTTTACCTTTCGATACTTATTACGAGATG
TGTGAAAATAATCTCAAAGCCGGCCACAGCCATGACAAAAGCATCCAGTT
GACAAAAATCTTCCGAGAACATCCATTGGGAATTCACCGTATTATAAATG
AGCAGCggtaaatgaaaaaatgtttgaattagATGAACGATTATCAAATT
GATCAGTGTGAACCATTGGCGCTTGAATCTCCGTCGACCGCGAACCAAAA
CGATAAAGGATAGTGTGTTCATAGGTAAGGAGATTGATAAAATGGTGGAT
ATGAAAAAGAGCGACCCAACCTTCATGTTTTATAACTGTATTGTTGGTTA
TTTTTTGTTCTcctgaaaaacaaaaatgacaGCACAATTGTTTAGGGTAA
CTGTATCAGAAagacgagatgaaatttttttcaaatttcagctatagtag
ggggaatttagttcttttttttgaggtctcgagatattgagcttcaaaaa
gcgcaaaaactggacaaaacagctgtttctggctgaaaaacacggttttc
aagggttaatatctcgagttaggtacagaaatcacctataaaTGCAATAT
ATctataatcttaattttttgagagctttccaaaaatatacaac
Run BLAST on NCBI

transcript from alignment at sc0002720:10437..12138+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041146 ID=TCONS_00041146|Name=TCONS_00041146|organism=Clytia hemisphaerica|type=transcript|length=1702bp|location=Sequence derived from alignment at sc0002720:10437..12138+ (Clytia hemisphaerica)
CTTAGTCGCTAACTTACTAACATAAAAGAGCAAAGTCTACATAAATATTT
ACTGAGGGTATAGCAAATGATTTTTACCTTTCGATACTTATTACGAGATG
TGTGAAAATAATCTCAAAGCCGGCCACAGCCATGACAAAAGCATCCAGTT
GACAAAAATCTTCCGAGAACATCCATTGGGAATTCACCGTATTATAAATG
AGCAGCggtaaatgaaaaaatgtttgaattagATGAACGATTATCAAATT
GATCAGTGTGAACCATTGGCGCTTGAATCTCCGTCGACCGCGAACCAAAA
CGATAAAGGATAGTGTGTTCATAGGTAAGGAGATTGATAAAATGGTGGAT
ATGAAAAAGAGCGACCCAACCTTCATGTTTTATAACTGTATTGTTGGTTA
TTTTTTGTTCTcctgaaaaacaaaaatgacaGCACAATTGTTTAGGGTAA
CTGTATCAGAAagacgagatgaaatttttttcaaatttcagctatagtag
ggggaaattaaagtctgtccagatataattggcagtggaaacaagaatgc
ctgtaacttttgatagtcaaatataattatggaaaatttttttgcttgtt
ttaaagaatcaaaagcgctatatttgaatgtatttttggttaaaaaattc
gcgatttttagcggttaaatttgcgattgcaaaaattgagctttttttct
acttatgctataatgTTGATTTTTACATCAGttgtagttcaaccttaggt
taagaagttttttaaatttcaaggcaaacagaaaagttcttcggaagata
tgggacccgaaatatcCCTTGGTAGCGCTTTTCTgttaaatatcaaatct
ccaacttattactaaaaacgggggtagtgatatgattgataaaacagttt
ttcgatcataacacatttttacgatctttttaatgacctcatagccaaac
tgtgtttagtgttttgggaattagcaaagttctttaatgacttaaaaata
acaaaggcaatatatgttcatgcttatcttttcaataaaaacaattatac
tgcgATTTCACTTcatttcgaaataatcaatgataccaataataccaatg
caccaacactttttccaacttttaattgcactgttcaaaaaagataacat
aacccccgtttttagtaataagttggagatttgatatttcacagaaaagt
gctaccaagaggtatttcgggtcccatatcttccgaagaaCTTTTCTGTT
TACCTTGAAATTTagcaaacttcttaacctaaggttgaactacaaCTGAT
GTAAAAATGAACCTTATAgcataagtaaaaaaaaagctcaatttttgcaa
tcgcaaatttaaccactaaaaatcgcgaatttttcaaccaaaaatacatt
caaatatagcgcttttgattctctaaaagaagcagaaaaaatttccataa
ttatatttgactatcaaaagttacaggcattcttgtttccactgccaatt
atatctggacagactttagttcttttttttgaggtctcgagatattgagc
ttcaaaaagcgcaaaaactggacaaaacagctgtttctggctgaaaaaca
cggttttcaagggttaatatctcgagttaggtacagaaatcacctataaa
TGCAATATATctataatcttaattttttgagagctttccaaaaatataca
ac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025153XLOC_025153Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041146-exon-sc0002720-1491911889:10437..10942TCONS_00041146-exon-sc0002720-1491911889:10437..10942Clytia hemisphaericaexon
TCONS_00041146-exon-sc0002720-1510915933:10437..10942TCONS_00041146-exon-sc0002720-1510915933:10437..10942Clytia hemisphaericaexon
TCONS_00041146-exon-sc0002720-1575043694:10437..10942TCONS_00041146-exon-sc0002720-1575043694:10437..10942Clytia hemisphaericaexon
TCONS_00041146-exon-sc0002720-1491911889:11951..12138TCONS_00041146-exon-sc0002720-1491911889:11951..12138Clytia hemisphaericaexon
TCONS_00041146-exon-sc0002720-1510915933:11951..12138TCONS_00041146-exon-sc0002720-1510915933:11951..12138Clytia hemisphaericaexon
TCONS_00041146-exon-sc0002720-1575043694:11951..12138TCONS_00041146-exon-sc0002720-1575043694:11951..12138Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002720supercontigsc0002720:10437..12138 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.40074	0.659783	0.953785	1.89355	0.510024	0.781208	0.31783	0.943849	0.562105	0.873086	0.450195	0.637565	0.956778	0.587788	0.90303	0.673472	0.332302	0.566469	0.177188	0.83736	1.24309	1.75489	1.32956	1.70984	0.567363	0.917614	17.3804	16.1238	1.92105	1.78887
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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