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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041139 ID=TCONS_00041139|Name=TCONS_00041139|organism=Clytia hemisphaerica|type=transcript|length=1452bp
CATTTAGTAGAATCTAACACAACAATACCATAATTACAACCAAGCTGGAT
TTCGAACCACGCTCGTTAAGACCATTTCATCGAAGACAACGATCACCGGA
CAGCTTCCAGTAATCCTAACCTCCCAACGGCTCGTTTAAAAGTGCTCCCG
TCCTTCGTCCTGACGATTGCCACTCGCGTTCTGCCGTCCTCTGATGGAAT
TACGCTTTGGATTCGTGCCAACGGCCACTTGTGTCTGGCGATTGAGGTGT
CCTTGATGACCACAAGGTCTCCTGGCTTCATGTTTCTCGTTTCGCTCGTC
CATTTTGACCTTTCGTTAAGCGAGGGCAGGTATTCTTTCACCCATCTTGA
CCAAAACGTTGCGAGTGCCTTTTGGACTTGCTTCCATTTGCTCCTTAGTC
CGGATGCCTCGCTCATGATTGGATAATTTGGTGCAGATCGACCAAGAAGA
AAGTGATTTGTAGTCAGGGCTTCATAATCGTTTATGTCGTCACTAACAGG
TGTAATTGGTCGGGAATTGAGGGTTGACTCTACCTCAAGTAATAAGGTGT
GTAAAGCCTCCTCATTAAACATTCTGTCACCCACCGTTGCCCTCAGTGCT
CTTTTTGTCAGCTTGACCATGGACTCCATGGCACCACCCATCCATGGCGC
GACGGGTGGGTTGAACTTCCATTCGATGTTGTTTGCTGAAAGTTCATTAG
TAATCCTTTTCTGGTCTAATTTCTCGAGTGCCTCCCTTAATTCTCTCTCT
GCCCCCACAAAAGTAGTCCCGTTGTCACTTCGGATAACCCTGGGGTTACC
CCTTCTTGCCCTGAATCTTCTAAGTGCTAGGATAAAATTAGCATTGGACC
AAAGTAGTCCACTCCGACATTTTGGAATGCGTGACATCTGGAATCAACTC
TTTCAAGTGGTAAGTCAGCCATCAGTGGATGTTTCGTCTTGACGCTCTCC
TTTTTGCAGAAGAAGCATTTCGTTAATATCTGTCTCACCTTTGATTTTGC
GGCTGTGATCCAAAATTTCTCCCTCAGGATGGACAATGTTGCGTTTCTTC
CGATGTGATGATGTTTCTCATGTGTATGTCGGATGATGAGTGTGCTGATC
GGATGTTCTTTAGATAAGATGATTTGATGCTTCGCTTGGGTAGGTAACAG
TGCTTTTGAAAGTCTGCCTCCTACACACAGAAGTCCTTCCATCTTTGTTG
GCTGAAGATTCGTCAGTCTTTGTGCGGACAAACTTGCTCTGGATTCTTCT
TGAGAAATTCTGCATAGTTCTCGGCTGGCTCTTTGAAGATCATTGGCGGT
CAGAATTGACATATCTGTCTCCGAGCTACCGTGTCGTTTGAATTCTACCC
ATCTCCTTTTCAGTTTCATGATCCATGCGTGAGCTCGTTTGATTTTGTCC
CATTCTGAAAACTTCTCCCATCTGATGACATCCGTCATTTGATCCTCTAA
TC Run BLAST on NCBI protein sequence of TCONS_00041139-protein >TCONS_00041139-protein ID=TCONS_00041139-protein|Name=TCONS_00041139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
MSRIPKCRSGLLWSNANFILALRRFRARRGNPRVIRSDNGTTFVGAEREL
REALEKLDQKRITNELSANNIEWKFNPPVAPWMGGAMESMVKLTKRALRA
TVGDRMFNEEALHTLLLEVESTLNSRPITPVSDDINDYEALTTNHFLLGR
SAPNYPIMSEASGLRSKWKQVQKALATFWSRWVKEYLPSLNERSKWTSET
RNMKPGDLVVIKDTSIARHKWPLARIQSVIPSEDGRTRVAIVRTKDGSTF
KRAVGRLGLLEAVR Run BLAST on NCBI transcript from alignment at sc0002717:3504..4955 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041139 ID=TCONS_00041139|Name=TCONS_00041139|organism=Clytia hemisphaerica|type=transcript|length=1452bp|location=Sequence derived from alignment at sc0002717:3504..4955 (Clytia hemisphaerica)
GATTAGAGGATCAAATGACGGATGTCATCAGATGGGAGAAGTTTTCAGAA
TGGGACAAAATCAAACGAGCTCACGCATGGATCATGAAACTGAAAAGGAG
ATGGGTAGAATTCAAACGACACGGTAGCTCGGAGACAGATATGTCAATTC
TGACCGCCAATGATCTTCAAAGAGCCAGCCGAGAACTATGCAGAATTTCT
CAAGAAGAATCCAGAGCAAGTTTGTCCGCACAAAGACTGACGAATCTTCA
GCCAACAAAGATGGAAGGACTTCTGTGTGTAGGAGGCAGACTTTCAAAAG
CACTGTTACCTACCCAAGCGAAGCATCAAATCATCTTATCTAAAGAACAT
CCGATCAGCACACTCATCATCCGACATACACATGAGAAACATCATCACAT
CGGAAGAAACGCAACATTGTCCATCCTGAGGGAGAAATTTTGGATCACAG
CCGCAAAATCAAAGGTGAGACAGATATTAACGAAATGCTTCTTCTGCAAA
AAGGAGAGCGTCAAGACGAAACATCCACTGATGGCTGACTTACCACTTGA
AAGAGTTGATTCCAGATGTCACGCATTCCAAAATGTCGGAGTGGACTACT
TTGGTCCAATGCTAATTTTATCCTAGCACTTAGAAGATTCAGGGCAAGAA
GGGGTAACCCCAGGGTTATCCGAAGTGACAACGGGACTACTTTTGTGGGG
GCAGAGAGAGAATTAAGGGAGGCACTCGAGAAATTAGACCAGAAAAGGAT
TACTAATGAACTTTCAGCAAACAACATCGAATGGAAGTTCAACCCACCCG
TCGCGCCATGGATGGGTGGTGCCATGGAGTCCATGGTCAAGCTGACAAAA
AGAGCACTGAGGGCAACGGTGGGTGACAGAATGTTTAATGAGGAGGCTTT
ACACACCTTATTACTTGAGGTAGAGTCAACCCTCAATTCCCGACCAATTA
CACCTGTTAGTGACGACATAAACGATTATGAAGCCCTGACTACAAATCAC
TTTCTTCTTGGTCGATCTGCACCAAATTATCCAATCATGAGCGAGGCATC
CGGACTAAGGAGCAAATGGAAGCAAGTCCAAAAGGCACTCGCAACGTTTT
GGTCAAGATGGGTGAAAGAATACCTGCCCTCGCTTAACGAAAGGTCAAAA
TGGACGAGCGAAACGAGAAACATGAAGCCAGGAGACCTTGTGGTCATCAA
GGACACCTCAATCGCCAGACACAAGTGGCCGTTGGCACGAATCCAAAGCG
TAATTCCATCAGAGGACGGCAGAACGCGAGTGGCAATCGTCAGGACGAAG
GACGGGAGCACTTTTAAACGAGCCGTTGGGAGGTTAGGATTACTGGAAGC
TGTCCGGTGATCGTTGTCTTCGATGAAATGGTCTTAACGAGCGTGGTTCG
AAATCCAGCTTGGTTGTAATTATGGTATTGTTGTGTTAGATTCTACTAAA
TG Coding sequence (CDS) from alignment at sc0002717:3504..4955 >TCONS_00041139 ID=TCONS_00041139|Name=TCONS_00041139|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at sc0002717:3504..4955 (Clytia hemisphaerica)
ATGTCACGCATTCCAAAATGTCGGAGTGGACTACTTTGGTCCAATGCTAA
TTTTATCCTAGCACTTAGAAGATTCAGGGCAAGAAGGGGTAACCCCAGGG
TTATCCGAAGTGACAACGGGACTACTTTTGTGGGGGCAGAGAGAGAATTA
AGGGAGGCACTCGAGAAATTAGACCAGAAAAGGATTACTAATGAACTTTC
AGCAAACAACATCGAATGGAAGTTCAACCCACCCGTCGCGCCATGGATGG
GTGGTGCCATGGAGTCCATGGTCAAGCTGACAAAAAGAGCACTGAGGGCA
ACGGTGGGTGACAGAATGTTTAATGAGGAGGCTTTACACACCTTATTACT
TGAGGTAGAGTCAACCCTCAATTCCCGACCAATTACACCTGTTAGTGACG
ACATAAACGATTATGAAGCCCTGACTACAAATCACTTTCTTCTTGGTCGA
TCTGCACCAAATTATCCAATCATGAGCGAGGCATCCGGACTAAGGAGCAA
ATGGAAGCAAGTCCAAAAGGCACTCGCAACGTTTTGGTCAAGATGGGTGA
AAGAATACCTGCCCTCGCTTAACGAAAGGTCAAAATGGACGAGCGAAACG
AGAAACATGAAGCCAGGAGACCTTGTGGTCATCAAGGACACCTCAATCGC
CAGACACAAGTGGCCGTTGGCACGAATCCAAAGCGTAATTCCATCAGAGG
ACGGCAGAACGCGAGTGGCAATCGTCAGGACGAAGGACGGGAGCACTTTT
AAACGAGCCGTTGGGAGGTTAGGATTACTGGAAGCTGTCCGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041139-exon-sc0002717-1491911889:3504..4955 | TCONS_00041139-exon-sc0002717-1491911889:3504..4955 | Clytia hemisphaerica | exon |
| TCONS_00041139-exon-sc0002717-1510915933:3504..4955 | TCONS_00041139-exon-sc0002717-1510915933:3504..4955 | Clytia hemisphaerica | exon |
| TCONS_00041139-exon-sc0002717-1575043694:3504..4955 | TCONS_00041139-exon-sc0002717-1575043694:3504..4955 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002717 | supercontig | sc0002717:3504..4955 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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