|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041137 ID=TCONS_00041137|Name=TCONS_00041137|organism=Clytia hemisphaerica|type=transcript|length=1822bp
NNATATCGATTGTCCAGCCTCTCAAGGGAGATGTCGAAGTTCTCATTGGT
GCAGACACTCCGGAGGCCTTGCTTCACCTTGATTTTGTcaaaggaaaatc
gaaaaatgatcCAATGGCGGTAAAAACTATATTTGGTTGGACACTCTTTG
GAGGACGATCTTCTGAAAAATCTGTAACCGCAAACTTCCTATCTTTCGAG
AAACTGGAGGCGAGTGTTGAGAGGTTTTGGCAACAAGAGTCTTACGCAAC
CACATCAATGTTATCACCTGCTCTCTTGACGAAGGATGAGAGAAGAGCAC
TCACACTTCTCGAAAACGGTACCAATTTCGTCGAAGGAAGGTGTGAAGTT
GGAATGTTGTGGAGAAAGGACAAAGTTCAGCTCGAGAACAATCGATTCCT
AGCTGAGAAAAGGCTCCTATCAACAGAGAAACGTCTTGAGAAATTTCCAG
AGATCAAAGAAATCTACCACTCAAAGATTAAAGAGTACATCACTTTGGGA
CATGTAAAGAAATTGTCAGATACAGAGGCGAAGTCAGTTTCGAACAAAAT
TAACTACATCCCGCATCACTTTGTCCTGGAACCAAGGAAACCAGGAAAAA
TTAGAACCGTCTTCGATGCTTCCTCAAATTTCAAAGGCACTTCCCTGAAC
AAAAGTTTGCTACCCGGTCCGAACCTGCTAAATAATCTTGTCACCGTACT
TTCGAGGTTCAGAAGAGGTCGAGTAGCAGTCATCAGTGATATTGAGAAAA
TGTATCCCCAAGTCTTAGTTCCAGAAGAGGATCAAGATGCACTCCGCTTT
CTCTGGAGGGATAAACCTCCAGACCCTATCACGGAATATAAAATGCAGGT
TCATCTTTTCGGTAAGATCGACTCTCCATGTTGTGCCAATTGGGCGTTAC
GAAGCAGCATCACCCGTGTGGAAGGTAAAGAGGTTCAAGCATTCAAAGAT
CTATCAGAGGAGAATAAAAATAGAGTAACAGAAGCAGTGACTGAGGAATT
TTACATGGACGATTTCCTTAGCTCGTTTGACAACACCGAGGATGCAGTAG
AGACTTGTTTTAATGTCGCAGAAGTTGTGAAAGGAAGGAAGTTTAGGTTG
ACGAAATGGCTATCAAATGAACCAAAATTGCTGCAAGCTATGCCTACGGA
GGACGTATCCCCAAAGATCACCAGTCGAGAATTGGAACATTTACCCCATG
AAAGAACTCTTGGGGTATGGTGGGATCCATACAAGGacgaattctttttc
aaaataaagatgaaGGAACATCAAAAAACCAAACGAGGGCTCTTGAGTTT
TCTTAGCTCAATTTACGACCCTTTAGGATTCTTGGCTCCATTGCTGATTG
CACCAAAGATCACTCTCCAATCAATGTGGAAGGAAAAAGTTGGTTGGGAT
GACCCTATTCCAGAGAGCTTGCTAGATACCTATACAGAATGGTTGTCTAC
ATTGCCTGAATTTGGAAATGTCAAGGTACCAAGATGGTTTGGTTTTCCAA
TTGAAAGGGATGGTGTAGAACTTCATGTTTTTGCANTTATACAGAATTGT
TGTCTACATTGCCTGAATTTGGAAATGTCAAGGTACCAAGATGGTTTGGT
TTTCCAATTGAAAGGGATGGTGTAGAACTTCATGTTTTTGCAGATGCATC
ATTGAAGGCATTCAGCTCTTGTGCTTACTTCAGAGCGGTCAAGGACGAAG
ATGTTACATGTTCACTCATCGTTGGAAAATCGAGACTCTCGCCAATCAAA
GGAAACACCATTCCAAGACTAGAACTTCAAGCTGCAGTCCTTGCCTCAAG
GATAAAACACTGTATCAACANN Run BLAST on NCBI protein sequence of TCONS_00041137-protein >TCONS_00041137-protein ID=TCONS_00041137-protein|Name=TCONS_00041137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=540bp
ISIVQPLKGDVEVLIGADTPEALLHLDFVKGKSKNDPMAVKTIFGWTLFG
GRSSEKSVTANFLSFEKLEASVERFWQQESYATTSMLSPALLTKDERRAL
TLLENGTNFVEGRCEVGMLWRKDKVQLENNRFLAEKRLLSTEKRLEKFPE
IKEIYHSKIKEYITLGHVKKLSDTEAKSVSNKINYIPHHFVLEPRKPGKI
RTVFDASSNFKGTSLNKSLLPGPNLLNNLVTVLSRFRRGRVAVISDIEKM
YPQVLVPEEDQDALRFLWRDKPPDPITEYKMQVHLFGKIDSPCCANWALR
SSITRVEGKEVQAFKDLSEENKNRVTEAVTEEFYMDDFLSSFDNTEDAVE
TCFNVAEVVKGRKFRLTKWLSNEPKLLQAMPTEDVSPKITSRELEHLPHE
RTLGVWWDPYKDEFFFKIKMKEHQKTKRGLLSFLSSIYDPLGFLAPLLIA
PKITLQSMWKEKVGWDDPIPESLLDTYTEWLSTLPEFGNVKVPRWFGFPI
ERDGVELHVFAXIQNCCLHCLNLEMSRYQDGLVFQLKGMV Run BLAST on NCBI transcript from alignment at sc0002717:9639..11505+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041137 ID=TCONS_00041137|Name=TCONS_00041137|organism=Clytia hemisphaerica|type=transcript|length=1867bp|location=Sequence derived from alignment at sc0002717:9639..11505+ (Clytia hemisphaerica)
NNATATCGATTGTCCAGCCTCTCAAGGGAGATGTCGAAGTTCTCATTGGT
GCAGACACTCCGGAGGCCTTGCTTCACCTTGATTTTGTcaaaggaaaatc
gaaaaatgatcCAATGGCGGTAAAAACTATATTTGGTTGGACACTCTTTG
GAGGACGATCTTCTGAAAAATCTGTAACCGCAAACTTCCTATCTTTCGAG
AAACTGGAGGCGAGTGTTGAGAGGTTTTGGCAACAAGAGTCTTACGCAAC
CACATCAATGTTATCACCTGCTCTCTTGACGAAGGATGAGAGAAGAGCAC
TCACACTTCTCGAAAACGGTACCAATTTCGTCGAAGGAAGGTGTGAAGTT
GGAATGTTGTGGAGAAAGGACAAAGTTCAGCTCGAGAACAATCGATTCCT
AGCTGAGAAAAGGCTCCTATCAACAGAGAAACGTCTTGAGAAATTTCCAG
AGATCAAAGAAATCTACCACTCAAAGATTAAAGAGTACATCACTTTGGGA
CATGTAAAGAAATTGTCAGATACAGAGGCGAAGTCAGTTTCGAACAAAAT
TAACTACATCCCGCATCACTTTGTCCTGGAACCAAGGAAACCAGGAAAAA
TTAGAACCGTCTTCGATGCTTCCTCAAATTTCAAAGGCACTTCCCTGAAC
AAAAGTTTGCTACCCGGTCCGAACCTGCTAAATAATCTTGTCACCGTACT
TTCGAGGTTCAGAAGAGGTCGAGTAGCAGTCATCAGTGATATTGAGAAAA
TGTATCCCCAAGTCTTAGTTCCAGAAGAGGATCAAGATGCACTCCGCTTT
CTCTGGAGGGATAAACCTCCAGACCCTATCACGGAATATAAAATGCAGGT
TCATCTTTTCGGTAAGATCGACTCTCCATGTTGTGCCAATTGGGCGTTAC
GAAGCAGCATCACCCGTGTGGAAGGTAAAGAGGTTCAAGCATTCAAAGAT
CTATCAGAGGAGAATAAAAATAGAGTAACAGAAGCAGTGACTGAGGAATT
TTACATGGACNTATCAGAGGAGAATAAAAGTAGAGTAACAGAATTTTACA
TGGACGATTTCCTTAGCTCGTTTGACAACACCGAGGATGCAGTAGAGACT
TGTTTTAATGTCGCAGAAGTTGTGAAAGGAAGGAAGTTTAGGTTGACGAA
ATGGCTATCAAATGAACCAAAATTGCTGCAAGCTATGCCTACGGAGGACG
TATCCCCAAAGATCACCAGTCGAGAATTGGAACATTTACCCCATGAAAGA
ACTCTTGGGGTATGGTGGGATCCATACAAGGacgaattctttttcaaaat
aaagatgaaGGAACATCAAAAAACCAAACGAGGGCTCTTGAGTTTTCTTA
GCTCAATTTACGACCCTTTAGGATTCTTGGCTCCATTGCTGATTGCACCA
AAGATCACTCTCCAATCAATGTGGAAGGAAAAAGTTGGTTGGGATGACCC
TATTCCAGAGAGCTTGCTAGATACCTATACAGAATGGTTGTCTACATTGC
CTGAATTTGGAAATGTCAAGGTACCAAGATGGTTTGGTTTTCCAATTGAA
AGGGATGGTGTAGAACTTCATGTTTTTGCANTTATACAGAATTGTTGTCT
ACATTGCCTGAATTTGGAAATGTCAAGGTACCAAGATGGTTTGGTTTTCC
AATTGAAAGGGATGGTGTAGAACTTCATGTTTTTGCAGATGCATCATTGA
AGGCATTCAGCTCTTGTGCTTACTTCAGAGCGGTCAAGGACGAAGATGTT
ACATGTTCACTCATCGTTGGAAAATCGAGACTCTCGCCAATCAAAGGAAA
CACCATTCCAAGACTAGAACTTCAAGCTGCAGTCCTTGCCTCAAGGATAA
AACACTGTATCAACANN Coding sequence (CDS) from alignment at sc0002717:9639..11505+ >TCONS_00041137 ID=TCONS_00041137|Name=TCONS_00041137|organism=Clytia hemisphaerica|type=CDS|length=3246bp|location=Sequence derived from alignment at sc0002717:9639..11505+ (Clytia hemisphaerica)
ATATCGATTGTCCAGCCTCTCAAGGGAGATGTCGAAGTTCTCATTGGTGC
AGACACTCCGGAGGCCTTGCTTCACCTTGATTTTGTcaaaggaaaatcga
aaaatgatcCAATGGCGGTAAAAACTATATTTGGTTGGACACTCTTTGGA
GGACGATCTTCTGAAAAATCTGTAACCGCAAACTTCCTATCTTTCGAGAA
ACTGGAGGCGAGTGTTGAGAGGTTTTGGCAACAAGAGTCTTACGCAACCA
CATCAATGTTATCACCTGCTCTCTTGACGAAGGATGAGAGAAGAGCACTC
ACACTTCTCGAAAACGGTACCAATTTCGTCGAAGGAAGGTGTGAAGTTGG
AATGTTGTGGAGAAAGGACAAAGTTCAGCTCGAGAACAATCGATTCCTAG
CTGAGAAAAGGCTCCTATCAACAGAGAAACGTCTTGAGAAATTTCCAGAG
ATCAAAGAAATCTACCACTCAAAGATTAAAGAGTACATCACTTTGGGACA
TGTAAAGAAATTGTCAGATACAGAGGCGAAGTCAGTTTCGAACAAAATTA
ACTACATCCCGCATCACTTTGTCCTGGAACCAAGGAAACCAGGAAAAATT
AGAACCGTCTTCGATGCTTCCTCAAATTTCAAAGGCACTTCCCTGAACAA
AAGTTTGCTACCCGGTCCGAACCTGCTAAATAATCTTGTCACCGTACTTT
CGAGGTTCAGAAGAGGTCGAGTAGCAGTCATCAGTGATATTGAGAAAATG
TATCCCCAAGTCTTAGTTCCAGAAGAGGATCAAGATGCACTCCGCTTTCT
CTGGAGGGATAAACCTCCAGACCCTATCACGGAATATAAAATGCAGGTTC
ATCTTTTCGGTAAGATCGACTCTCCATGTTGTGCCAATTGGGCGTTACGA
AGCAGCATCACCCGTGTGGAAGGTAAAGAGGTTCAAGCATTCAAAGATCT
ATCAGAGGAGAATAAAAATAGAGTAACAGAAGCAGTGACTGAGGAATTTT
ACATGGACGATTTCCTTAGCTCGTTTGACAACACCGAGGATGCAGTAGAG
ACTTGTTTTAATGTCGCAGAAGTTGTGAAAGGAAGGAAGTTTAGGTTGAC
GAAATGGCTATCAAATGAACCAAAATTGCTGCAAGCTATGCCTACGGAGG
ACGTATCCCCAAAGATCACCAGTCGAGAATTGGAACATTTACCCCATGAA
AGAACTCTTGGGGTATGGTGGGATCCATACAAGGacgaattctttttcaa
aataaagatgaaGGAACATCAAAAAACCAAACGAGGGCTCTTGAGTTTTC
TTAGCTCAATTTACGACCCTTTAGGATTCTTGGCTCCATTGCTGATTGCA
CCAAAGATCACTCTCCAATCAATGTGGAAGGAAAAAGTTGGTTGGGATGA
CCCTATTCCAGAGAGCTTGCTAGATACCTATACAGAATGGTTGTCTACAT
TGCCTGAATTTGGAAATGTCAAGGTACCAAGATGGTTTGGTTTTCCAATT
GAAAGGGATGGTGTAGAACTTCATGTTTTTGCANTTATACAGAATTGTTG
TCTACATTGCCTGAATTTGGAAATGTCAAGGTACCAAGATGGTTTGGTTT
TCCAATTGAAAGGGATGGTGTAGATATCGATTGTCCAGCCTCTCAAGGGA
GATGTCGAAGTTCTCATTGGTGCAGACACTCCGGAGGCCTTGCTTCACCT
TGATTTTGTcaaaggaaaatcgaaaaatgatcCAATGGCGGTAAAAACTA
TATTTGGTTGGACACTCTTTGGAGGACGATCTTCTGAAAAATCTGTAACC
GCAAACTTCCTATCTTTCGAGAAACTGGAGGCGAGTGTTGAGAGGTTTTG
GCAACAAGAGTCTTACGCAACCACATCAATGTTATCACCTGCTCTCTTGA
CGAAGGATGAGAGAAGAGCACTCACACTTCTCGAAAACGGTACCAATTTC
GTCGAAGGAAGGTGTGAAGTTGGAATGTTGTGGAGAAAGGACAAAGTTCA
GCTCGAGAACAATCGATTCCTAGCTGAGAAAAGGCTCCTATCAACAGAGA
AACGTCTTGAGAAATTTCCAGAGATCAAAGAAATCTACCACTCAAAGATT
AAAGAGTACATCACTTTGGGACATGTAAAGAAATTGTCAGATACAGAGGC
GAAGTCAGTTTCGAACAAAATTAACTACATCCCGCATCACTTTGTCCTGG
AACCAAGGAAACCAGGAAAAATTAGAACCGTCTTCGATGCTTCCTCAAAT
TTCAAAGGCACTTCCCTGAACAAAAGTTTGCTACCCGGTCCGAACCTGCT
AAATAATCTTGTCACCGTACTTTCGAGGTTCAGAAGAGGTCGAGTAGCAG
TCATCAGTGATATTGAGAAAATGTATCCCCAAGTCTTAGTTCCAGAAGAG
GATCAAGATGCACTCCGCTTTCTCTGGAGGGATAAACCTCCAGACCCTAT
CACGGAATATAAAATGCAGGTTCATCTTTTCGGTAAGATCGACTCTCCAT
GTTGTGCCAATTGGGCGTTACGAAGCAGCATCACCCGTGTGGAAGGTAAA
GAGGTTCAAGCATTCAAAGATCTATCAGAGGAGAATAAAAATAGAGTAAC
AGAAGCAGTGACTGAGGAATTTTACATGGACGATTTCCTTAGCTCGTTTG
ACAACACCGAGGATGCAGTAGAGACTTGTTTTAATGTCGCAGAAGTTGTG
AAAGGAAGGAAGTTTAGGTTGACGAAATGGCTATCAAATGAACCAAAATT
GCTGCAAGCTATGCCTACGGAGGACGTATCCCCAAAGATCACCAGTCGAG
AATTGGAACATTTACCCCATGAAAGAACTCTTGGGGTATGGTGGGATCCA
TACAAGGacgaattctttttcaaaataaagatgaaGGAACATCAAAAAAC
CAAACGAGGGCTCTTGAGTTTTCTTAGCTCAATTTACGACCCTTTAGGAT
TCTTGGCTCCATTGCTGATTGCACCAAAGATCACTCTCCAATCAATGTGG
AAGGAAAAAGTTGGTTGGGATGACCCTATTCCAGAGAGCTTGCTAGATAC
CTATACAGAATGGTTGTCTACATTGCCTGAATTTGGAAATGTCAAGGTAC
CAAGATGGTTTGGTTTTCCAATTGAAAGGGATGGTGTAGAACTTCATGTT
TTTGCANTTATACAGAATTGTTGTCTACATTGCCTGAATTTGGAAATGTC
AAGGTACCAAGATGGTTTGGTTTTCCAATTGAAAGGGATGGTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041137-exon-sc0002717-1491911889:9639..10642 | TCONS_00041137-exon-sc0002717-1491911889:9639..10642 | Clytia hemisphaerica | exon |
| TCONS_00041137-exon-sc0002717-1510915933:9639..10642 | TCONS_00041137-exon-sc0002717-1510915933:9639..10642 | Clytia hemisphaerica | exon |
| TCONS_00041137-exon-sc0002717-1575043694:9639..10642 | TCONS_00041137-exon-sc0002717-1575043694:9639..10642 | Clytia hemisphaerica | exon |
| TCONS_00041137-exon-sc0002717-1491911889:10688..11505 | TCONS_00041137-exon-sc0002717-1491911889:10688..11505 | Clytia hemisphaerica | exon |
| TCONS_00041137-exon-sc0002717-1510915933:10688..11505 | TCONS_00041137-exon-sc0002717-1510915933:10688..11505 | Clytia hemisphaerica | exon |
| TCONS_00041137-exon-sc0002717-1575043694:10688..11505 | TCONS_00041137-exon-sc0002717-1575043694:10688..11505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002717 | supercontig | sc0002717:9639..11505 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
|
