|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041134 ID=TCONS_00041134|Name=TCONS_00041134|organism=Clytia hemisphaerica|type=transcript|length=1829bp
aattagaggaaaatttgaactttaccgtattaaattagaggaaaatcaaA
AGTAGGTAAATGGGTGCTCGCACTAATAATTAGCGGATTTAAATTAGttc
aaaatgacgaaaataattTCCTCGCATTAATTAGAGGAcgtattaaatta
gagaaaCTACGGTACTTCATTTCGTCCTTAGTAAAGATTTTATCAGCTTT
TCCTCTGTGTAAAAGTGTCTGTCCGACactgaaaaaaagaataatTACAC
ACTGAAATTTACTTCTGGTGCTGCAAATATTACTTTTGATATTAGTATGT
CGCACTTTTGTAAATCctaatgttaaaaaatatgTATAAGTGTAGGCCCG
CGTAACTCTTTAAACTAATCCTGCCCTTAAATTCAACAAAAAGTTTCTGT
GTCCGTCCGACATAAAAACCTCTTTTGTATGTATGCTACTTATCAAATCA
GATACAATGCAAATAAACTTTTcgaatattattttcaaaacacacGTCAC
AAACTTGCGAAATTATTCTATTGCACGTGTAAAAACTCTTCCTTAAACGC
GAGTGATATACTTTTCGAACGTTTTTAagtttcgaacgttcgaatagTCT
AAAATTGTCGTGATTTATTCGCAAGAATGATAGCATACATGATCATTTGA
AGACAAACTGCAACGGAAATCGGTCACAAAAATGGGGCGTCCAAGAAAAG
CTAATCCGACAACAAATGCTGAACGATGTAAGAAATACAGAGAAAAAGAT
CTAGAAGCTTCCAGAGCGAACGATGCATTGAGGAAAAGATTGGCAAGGCT
GAGAGCAAAACAAGATCTTGAAAACGTAAGGCGACGCTTAAAAAAGAAGC
TGCAGCCAAAAGGGAGAGAAgactacaaaaaaaattattacttGAACAAA
ACgAACAATCAAGTGCCAGCAACGTCAACGACACAACCGACACGACTCAA
CCACCGCCACCGCCATCTTCACCGCCGCCATCCACCAACAATAATACAGT
AGACCCTGAAACTCCAGCCAACCAGCCATCGACCTCATCTTCTTCCATTA
ATTCGGCATTTAAGCACCGTAGCACAAAATATCGTTCTTTATCACAAGCT
GAAAAGAGCCTGCCGCATAGCCCACGAAAAAGAAACGAGATTGTACAGCT
GATGGCCTCAAAGCATTTGAAAATCAAGTTTAACAAAAAAGGAGGTCGCA
TGAAACAAACATTGCTGAAGGCTGAAGAGGAGTGGCTATTAACCTTCTTG
GACCGTCCGGACATCTCCCGCCAAACGCCAGGCCGaaaggacaatgttta
cattGGGAAGGTTAATGGTAAAAGGGAGTATGCGCAAAAAAGATACCTTC
AGTGGACAATAAGGGAGCTACTTGACATCGTGAATGGGAATAGCGAAGTT
GAAGGAAGCCCGACGTTTCAGGAAGATTTCCAAAGGGATTTGACATTTAG
ACAGCTGTACGATTTCCTGAAAAAGCGCAAACAGTACAAGTTTTCGAATC
AAACTCCTCACGAATCCTGTACGTGTGAAATTTGTGAAAACATTCGCCTC
CTCGTAACGGCTGTTaataggaaaatgaaaaacatcgaCGCAAGATTACC
ATCAACCGTAAACGACCTGATAGCTGAATTTACATGCCAAAACGCCGGTG
AAAATTGCATGAAAAGTCTTTGTGAAGACTGTCCAACAGTCAAAATCAAC
GAAGAAGATTTCTTGGATCAAGACTCCGCATCGgcaaaatcaaccaatga
cgaCAACTCAGACAGTGAGACGGAGGAAGATGATGATATCACGTTTTATC
AGTGGGTGAACGTAGATGGAAAAGCTGCC Run BLAST on NCBI protein sequence of TCONS_00041134-protein >TCONS_00041134-protein ID=TCONS_00041134-protein|Name=TCONS_00041134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MASKHLKIKFNKKGGRMKQTLLKAEEEWLLTFLDRPDISRQTPGRKDNVY
IGKVNGKREYAQKRYLQWTIRELLDIVNGNSEVEGSPTFQEDFQRDLTFR
QLYDFLKKRKQYKFSNQTPHESCTCEICENIRLLVTAVNRKMKNIDARLP
STVNDLIAEFTCQNAGENCMKSLCEDCPTVKINEEDFLDQDSASAKSTND
DNSDSETEEDDDITFYQWVNVDGKAA Run BLAST on NCBI transcript from alignment at sc0002716:14683..16710+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041134 ID=TCONS_00041134|Name=TCONS_00041134|organism=Clytia hemisphaerica|type=transcript|length=2028bp|location=Sequence derived from alignment at sc0002716:14683..16710+ (Clytia hemisphaerica)
aattagaggaaaatttgaactttaccgtattaaattagaggaaaatcaaA
AGTAGGTAAATGGGTGCTCGCACTAATAATTAGCGGATTTAAATTAGttc
aaaatgacgaaaataattTCCTCGCATTAATTAGAGGAcgtattaaatta
gagaaaCTACGGTACTTCATTTCGTCCTTAGTAAAGATTTTATCAGCTTT
TCCTCTGTGTAAAAGTGTCTGTCCGACactgaaaaaaagaataatTACAC
ACTGAAATTTACTTCTGGTGCTGCAAATATTACTTTTGATATTAGTATGT
CGCACTTTTGTAAATCctaatgttaaaaaatatgTATAAGTGTAGGCCCG
CGTAACTCTTTAAACTAATCCTGCCCTTAAATTCAACAAAAAGTTTCTGT
GTCCGTCCGACATAAAAACCTCTTTTGTATGTATGCTACTTATCAAATCA
GATACAATGCAAATAAACTTTTcgaatattattttcaaaacacacGTCAC
AAACTTGCGAAATTATTCTATTGCACGTGTAAAAACTCTTCCTTAAACGC
GAGTGATATACTTTTCGAACGTTTTTAagtttcgaacgttcgaatagTCT
AAAATTGTCGTGATTTATTCGCAAGAATGATAGCATACATGATCATTTGA
AGACAAACTGCAACGGAAATCGGTCACAAAAATGGGGCGTCCAAGAAAAG
CTAATCCGACAACAAATGCTGAACGATGTAAGAAATACAGAGAAAAAGAT
CTAGAAGCTTCCAGAGCGAACGATGCATTGAGGAAAAGATTGGCAAGGCT
GAGAGCAAAACAAGATCTTGAAAACGTAAGGCGACGCTTAAAAAAGAAGC
TGCAGCCAAAAGGGAGAGAAgactacaaaaaaaattattacttGAACAAA
ACggtaaattttttctttattctcaaattctttgttttatcttttttaag
taaataaCTGAATGCAATAAGAGTCTCCCCCTTGGATACCAGGCTAGCAA
AAACCAATtcgaaatcaaaattgaaaatgaagattccTCAGGAAGCAAGA
ATCTTTTTTCCATCTCGGATACAAAATAAACTTAACTATCTTGTACATTT
AGAACAATCAAGTGCCAGCAACGTCAACGACACAACCGACACGACTCAAC
CACCGCCACCGCCATCTTCACCGCCGCCATCCACCAACAATAATACAGTA
GACCCTGAAACTCCAGCCAACCAGCCATCGACCTCATCTTCTTCCATTAA
TTCGGCATTTAAGCACCGTAGCACAAAATATCGTTCTTTATCACAAGCTG
AAAAGAGCCTGCCGCATAGCCCACGAAAAAGAAACGAGATTGTACAGCTG
ATGGCCTCAAAGCATTTGAAAATCAAGTTTAACAAAAAAGGAGGTCGCAT
GAAACAAACATTGCTGAAGGCTGAAGAGGAGTGGCTATTAACCTTCTTGG
ACCGTCCGGACATCTCCCGCCAAACGCCAGGCCGaaaggacaatgtttac
attGGGAAGGTTAATGGTAAAAGGGAGTATGCGCAAAAAAGATACCTTCA
GTGGACAATAAGGGAGCTACTTGACATCGTGAATGGGAATAGCGAAGTTG
AAGGAAGCCCGACGTTTCAGGAAGATTTCCAAAGGGATTTGACATTTAGA
CAGCTGTACGATTTCCTGAAAAAGCGCAAACAGTACAAGTTTTCGAATCA
AACTCCTCACGAATCCTGTACGTGTGAAATTTGTGAAAACATTCGCCTCC
TCGTAACGGCTGTTaataggaaaatgaaaaacatcgaCGCAAGATTACCA
TCAACCGTAAACGACCTGATAGCTGAATTTACATGCCAAAACGCCGGTGA
AAATTGCATGAAAAGTCTTTGTGAAGACTGTCCAACAGTCAAAATCAACG
AAGAAGATTTCTTGGATCAAGACTCCGCATCGgcaaaatcaaccaatgac
gaCAACTCAGACAGTGAGACGGAGGAAGATGATGATATCACGTTTTATCA
GTGGGTGAACGTAGATGGAAAAGCTGCC Coding sequence (CDS) from alignment at sc0002716:14683..16710+ >TCONS_00041134 ID=TCONS_00041134|Name=TCONS_00041134|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0002716:14683..16710+ (Clytia hemisphaerica)
ATGGCCTCAAAGCATTTGAAAATCAAGTTTAACAAAAAAGGAGGTCGCAT
GAAACAAACATTGCTGAAGGCTGAAGAGGAGTGGCTATTAACCTTCTTGG
ACCGTCCGGACATCTCCCGCCAAACGCCAGGCCGaaaggacaatgtttac
attGGGAAGGTTAATGGTAAAAGGGAGTATGCGCAAAAAAGATACCTTCA
GTGGACAATAAGGGAGCTACTTGACATCGTGAATGGGAATAGCGAAGTTG
AAGGAAGCCCGACGTTTCAGGAAGATTTCCAAAGGGATTTGACATTTAGA
CAGCTGTACGATTTCCTGAAAAAGCGCAAACAGTACAAGTTTTCGAATCA
AACTCCTCACGAATCCTGTACGTGTGAAATTTGTGAAAACATTCGCCTCC
TCGTAACGGCTGTTaataggaaaatgaaaaacatcgaCGCAAGATTACCA
TCAACCGTAAACGACCTGATAGCTGAATTTACATGCCAAAACGCCGGTGA
AAATTGCATGAAAAGTCTTTGTGAAGACTGTCCAACAGTCAAAATCAACG
AAGAAGATTTCTTGGATCAAGACTCCGCATCGgcaaaatcaaccaatgac
gaCAACTCAGACAGTGAGACGGAGGAAGATGATGATATCACGTTTTATCA
GTGGGTGAACGTAGATGGAAAAGCTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041134-exon-sc0002716-1491911889:14683..15585 | TCONS_00041134-exon-sc0002716-1491911889:14683..15585 | Clytia hemisphaerica | exon |
| TCONS_00041134-exon-sc0002716-1510915933:14683..15585 | TCONS_00041134-exon-sc0002716-1510915933:14683..15585 | Clytia hemisphaerica | exon |
| TCONS_00041134-exon-sc0002716-1575043694:14683..15585 | TCONS_00041134-exon-sc0002716-1575043694:14683..15585 | Clytia hemisphaerica | exon |
| TCONS_00041134-exon-sc0002716-1491911889:15785..16710 | TCONS_00041134-exon-sc0002716-1491911889:15785..16710 | Clytia hemisphaerica | exon |
| TCONS_00041134-exon-sc0002716-1510915933:15785..16710 | TCONS_00041134-exon-sc0002716-1510915933:15785..16710 | Clytia hemisphaerica | exon |
| TCONS_00041134-exon-sc0002716-1575043694:15785..16710 | TCONS_00041134-exon-sc0002716-1575043694:15785..16710 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002716 | supercontig | sc0002716:14683..16710 + |
Blast
The following BLAST results are available for this feature:
|
